EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000015218 (Gene tree)
Gene ID: 109531545
Gene Symbol: cstf3
Alias: cleavage stimulation factor|3 pre-RNA|subunit 3|wu:fa99c02|wu:fb18b09|zgc:56028
Full Name: cleavage stimulation factor subunit 3
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 12314 bases
Position: chrKV880441.1:1050331-1062644
Accession: 109531545
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000012212	Suf	PF05843.14	1.9e-83	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000019164	-	2139	XM_019895886	ENSHCOP00000012212	712 (aa)	XP_019751445	-

Gene Model

Click here to download ENSHCOG00000015218's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000015218's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000015218	cstf3	100	88.858	ENSG00000176102	CSTF3	98	89.377	Homo_sapiens
ENSHCOG00000015218	cstf3	100	94.274	ENSAPOG00000014054	cstf3	100	94.274	Acanthochromis_polyacanthus
ENSHCOG00000015218	cstf3	99	89.266	ENSAMEG00000007187	CSTF3	98	89.235	Ailuropoda_melanoleuca
ENSHCOG00000015218	cstf3	88	89.904	ENSACIG00000005539	cstf3	100	89.904	Amphilophus_citrinellus
ENSHCOG00000015218	cstf3	100	93.855	ENSAOCG00000010930	cstf3	100	93.855	Amphiprion_ocellaris
ENSHCOG00000015218	cstf3	100	94.413	ENSAPEG00000007903	cstf3	100	94.413	Amphiprion_percula
ENSHCOG00000015218	cstf3	100	93.156	ENSATEG00000000190	cstf3	100	93.156	Anabas_testudineus
ENSHCOG00000015218	cstf3	99	89.266	ENSAPLG00000007217	CSTF3	99	89.235	Anas_platyrhynchos
ENSHCOG00000015218	cstf3	100	88.440	ENSACAG00000002823	CSTF3	100	88.440	Anolis_carolinensis
ENSHCOG00000015218	cstf3	99	89.915	ENSANAG00000020699	CSTF3	100	90.080	Aotus_nancymaae
ENSHCOG00000015218	cstf3	100	93.820	ENSACLG00000007820	cstf3	100	93.820	Astatotilapia_calliptera
ENSHCOG00000015218	cstf3	100	91.643	ENSAMXG00000014198	cstf3	98	92.362	Astyanax_mexicanus
ENSHCOG00000015218	cstf3	100	88.858	ENSBTAG00000008617	CSTF3	100	88.872	Bos_taurus
ENSHCOG00000015218	cstf3	97	47.283	WBGene00006307	suf-1	99	47.283	Caenorhabditis_elegans
ENSHCOG00000015218	cstf3	99	89.915	ENSCJAG00000005533	CSTF3	100	90.080	Callithrix_jacchus
ENSHCOG00000015218	cstf3	100	88.858	ENSCAFG00000007264	CSTF3	98	89.377	Canis_familiaris
ENSHCOG00000015218	cstf3	99	89.915	ENSCAFG00020002715	CSTF3	98	89.886	Canis_lupus_dingo
ENSHCOG00000015218	cstf3	98	89.843	ENSCHIG00000016418	CSTF3	100	90.080	Capra_hircus
ENSHCOG00000015218	cstf3	99	89.407	ENSTSYG00000000451	CSTF3	98	93.960	Carlito_syrichta
ENSHCOG00000015218	cstf3	83	88.995	ENSCAPG00000010958	CSTF3	98	88.995	Cavia_aperea
ENSHCOG00000015218	cstf3	100	88.997	ENSCPOG00000005545	CSTF3	99	89.377	Cavia_porcellus
ENSHCOG00000015218	cstf3	100	88.858	ENSCCAG00000024790	CSTF3	100	90.080	Cebus_capucinus
ENSHCOG00000015218	cstf3	100	88.858	ENSCATG00000007080	CSTF3	100	90.080	Cercocebus_atys
ENSHCOG00000015218	cstf3	100	88.858	ENSCLAG00000016179	CSTF3	98	89.377	Chinchilla_lanigera
ENSHCOG00000015218	cstf3	78	93.985	ENSCHOG00000002497	CSTF3	79	93.939	Choloepus_hoffmanni
ENSHCOG00000015218	cstf3	100	88.579	ENSCPBG00000006753	CSTF3	100	88.579	Chrysemys_picta_bellii
ENSHCOG00000015218	cstf3	99	60.194	ENSCING00000006401	-	98	60.475	Ciona_intestinalis
ENSHCOG00000015218	cstf3	98	60.140	ENSCSAVG00000004851	-	100	60.140	Ciona_savignyi
ENSHCOG00000015218	cstf3	100	88.858	ENSCANG00000035468	CSTF3	100	90.080	Colobus_angolensis_palliatus
ENSHCOG00000015218	cstf3	100	88.997	ENSCGRG00001014773	Cstf3	99	89.235	Cricetulus_griseus_chok1gshd
ENSHCOG00000015218	cstf3	100	88.997	ENSCGRG00000004142	Cstf3	99	89.235	Cricetulus_griseus_crigri
ENSHCOG00000015218	cstf3	100	93.436	ENSCSEG00000014283	cstf3	98	93.608	Cynoglossus_semilaevis
ENSHCOG00000015218	cstf3	100	92.039	ENSCVAG00000019739	cstf3	100	92.039	Cyprinodon_variegatus
ENSHCOG00000015218	cstf3	100	90.237	ENSDARG00000018904	cstf3	98	90.780	Danio_rerio
ENSHCOG00000015218	cstf3	99	89.266	ENSDNOG00000007366	CSTF3	98	89.235	Dasypus_novemcinctus
ENSHCOG00000015218	cstf3	99	84.062	ENSDORG00000005898	Cstf3	99	84.017	Dipodomys_ordii
ENSHCOG00000015218	cstf3	99	55.000	FBgn0003559	su(f)	99	55.000	Drosophila_melanogaster
ENSHCOG00000015218	cstf3	84	89.465	ENSETEG00000017097	CSTF3	83	89.465	Echinops_telfairi
ENSHCOG00000015218	cstf3	84	74.624	ENSEBUG00000015459	cstf3	96	74.624	Eptatretus_burgeri
ENSHCOG00000015218	cstf3	99	89.831	ENSEASG00005019884	CSTF3	96	93.960	Equus_asinus_asinus
ENSHCOG00000015218	cstf3	99	89.831	ENSECAG00000023338	CSTF3	96	93.960	Equus_caballus
ENSHCOG00000015218	cstf3	100	83.844	ENSEEUG00000015167	CSTF3	98	84.136	Erinaceus_europaeus
ENSHCOG00000015218	cstf3	100	91.632	ENSELUG00000023393	cstf3	98	92.057	Esox_lucius
ENSHCOG00000015218	cstf3	100	88.719	ENSFCAG00000030711	CSTF3	98	89.235	Felis_catus
ENSHCOG00000015218	cstf3	92	90.649	ENSFALG00000010764	CSTF3	100	87.558	Ficedula_albicollis
ENSHCOG00000015218	cstf3	100	88.719	ENSFDAG00000012082	CSTF3	98	89.235	Fukomys_damarensis
ENSHCOG00000015218	cstf3	100	92.318	ENSFHEG00000020623	cstf3	100	92.318	Fundulus_heteroclitus
ENSHCOG00000015218	cstf3	100	92.201	ENSGMOG00000012275	cstf3	100	92.201	Gadus_morhua
ENSHCOG00000015218	cstf3	100	88.162	ENSGALG00000011685	CSTF3	100	88.162	Gallus_gallus
ENSHCOG00000015218	cstf3	100	92.039	ENSGAFG00000002181	cstf3	100	92.039	Gambusia_affinis
ENSHCOG00000015218	cstf3	100	93.296	ENSGACG00000015997	cstf3	100	93.296	Gasterosteus_aculeatus
ENSHCOG00000015218	cstf3	100	88.579	ENSGAGG00000006200	CSTF3	100	88.579	Gopherus_agassizii
ENSHCOG00000015218	cstf3	99	85.795	ENSGGOG00000026591	CSTF3	95	92.325	Gorilla_gorilla
ENSHCOG00000015218	cstf3	100	93.680	ENSHBUG00000016656	cstf3	100	93.680	Haplochromis_burtoni
ENSHCOG00000015218	cstf3	100	88.719	ENSHGLG00000017834	CSTF3	98	89.235	Heterocephalus_glaber_female
ENSHCOG00000015218	cstf3	100	88.719	ENSHGLG00100018042	CSTF3	99	89.235	Heterocephalus_glaber_male
ENSHCOG00000015218	cstf3	100	91.074	ENSIPUG00000013170	CSTF3	99	91.773	Ictalurus_punctatus
ENSHCOG00000015218	cstf3	100	88.858	ENSSTOG00000013306	CSTF3	98	89.377	Ictidomys_tridecemlineatus
ENSHCOG00000015218	cstf3	99	78.682	ENSJJAG00000018430	Cstf3	98	78.865	Jaculus_jaculus
ENSHCOG00000015218	cstf3	100	92.458	ENSKMAG00000010916	cstf3	100	92.458	Kryptolebias_marmoratus
ENSHCOG00000015218	cstf3	100	93.296	ENSLBEG00000002306	cstf3	100	93.296	Labrus_bergylta
ENSHCOG00000015218	cstf3	100	87.587	ENSLACG00000017296	CSTF3	98	88.085	Latimeria_chalumnae
ENSHCOG00000015218	cstf3	100	90.947	ENSLOCG00000004415	cstf3	98	91.501	Lepisosteus_oculatus
ENSHCOG00000015218	cstf3	100	89.136	ENSLAFG00000008712	CSTF3	98	89.518	Loxodonta_africana
ENSHCOG00000015218	cstf3	100	88.858	ENSMFAG00000029516	CSTF3	100	90.080	Macaca_fascicularis
ENSHCOG00000015218	cstf3	100	88.858	ENSMMUG00000002542	CSTF3	98	89.377	Macaca_mulatta
ENSHCOG00000015218	cstf3	100	88.858	ENSMNEG00000021807	CSTF3	100	90.080	Macaca_nemestrina
ENSHCOG00000015218	cstf3	100	88.858	ENSMLEG00000039594	CSTF3	97	94.407	Mandrillus_leucophaeus
ENSHCOG00000015218	cstf3	100	94.101	ENSMAMG00000020423	cstf3	100	94.101	Mastacembelus_armatus
ENSHCOG00000015218	cstf3	99	94.168	ENSMZEG00005012082	cstf3	99	94.143	Maylandia_zebra
ENSHCOG00000015218	cstf3	100	88.301	ENSMGAG00000001383	CSTF3	100	88.301	Meleagris_gallopavo
ENSHCOG00000015218	cstf3	100	88.858	ENSMAUG00000002487	Cstf3	98	89.093	Mesocricetus_auratus
ENSHCOG00000015218	cstf3	100	88.579	ENSMICG00000004784	CSTF3	100	89.760	Microcebus_murinus
ENSHCOG00000015218	cstf3	100	88.997	ENSMOCG00000017583	Cstf3	98	89.235	Microtus_ochrogaster
ENSHCOG00000015218	cstf3	99	93.220	ENSMMOG00000016026	cstf3	94	93.182	Mola_mola
ENSHCOG00000015218	cstf3	99	79.383	ENSMODG00000025205	-	98	79.887	Monodelphis_domestica
ENSHCOG00000015218	cstf3	100	88.719	ENSMODG00000009745	-	98	89.093	Monodelphis_domestica
ENSHCOG00000015218	cstf3	100	93.978	ENSMALG00000012050	cstf3	100	93.978	Monopterus_albus
ENSHCOG00000015218	cstf3	100	88.997	MGP_CAROLIEiJ_G0024026	Cstf3	98	89.235	Mus_caroli
ENSHCOG00000015218	cstf3	100	88.997	ENSMUSG00000027176	Cstf3	98	89.235	Mus_musculus
ENSHCOG00000015218	cstf3	100	88.997	MGP_PahariEiJ_G0025464	Cstf3	98	89.235	Mus_pahari
ENSHCOG00000015218	cstf3	100	88.997	MGP_SPRETEiJ_G0024939	Cstf3	98	89.235	Mus_spretus
ENSHCOG00000015218	cstf3	100	88.719	ENSMPUG00000011457	CSTF3	98	89.235	Mustela_putorius_furo
ENSHCOG00000015218	cstf3	99	89.407	ENSMLUG00000003073	-	98	89.377	Myotis_lucifugus
ENSHCOG00000015218	cstf3	100	86.490	ENSMLUG00000026022	-	98	86.969	Myotis_lucifugus
ENSHCOG00000015218	cstf3	100	88.997	ENSNGAG00000010677	Cstf3	99	89.235	Nannospalax_galili
ENSHCOG00000015218	cstf3	88	94.703	ENSNBRG00000007345	cstf3	100	94.703	Neolamprologus_brichardi
ENSHCOG00000015218	cstf3	99	89.915	ENSNLEG00000017901	CSTF3	97	94.831	Nomascus_leucogenys
ENSHCOG00000015218	cstf3	72	89.648	ENSMEUG00000005640	-	98	89.648	Notamacropus_eugenii
ENSHCOG00000015218	cstf3	67	93.421	ENSOPRG00000000199	-	65	96.875	Ochotona_princeps
ENSHCOG00000015218	cstf3	87	79.516	ENSODEG00000006311	-	95	79.516	Octodon_degus
ENSHCOG00000015218	cstf3	100	88.858	ENSODEG00000016737	-	99	89.744	Octodon_degus
ENSHCOG00000015218	cstf3	100	93.017	ENSONIG00000005563	cstf3	100	93.017	Oreochromis_niloticus
ENSHCOG00000015218	cstf3	88	89.573	ENSOANG00000015140	CSTF3	97	89.573	Ornithorhynchus_anatinus
ENSHCOG00000015218	cstf3	100	88.858	ENSOCUG00000015417	CSTF3	98	89.235	Oryctolagus_cuniculus
ENSHCOG00000015218	cstf3	100	92.458	ENSORLG00000009762	cstf3	99	93.182	Oryzias_latipes
ENSHCOG00000015218	cstf3	99	93.548	ENSORLG00020005540	cstf3	99	94.302	Oryzias_latipes_hni
ENSHCOG00000015218	cstf3	100	92.318	ENSORLG00015003551	cstf3	99	93.571	Oryzias_latipes_hsok
ENSHCOG00000015218	cstf3	100	92.039	ENSOMEG00000003848	cstf3	99	92.756	Oryzias_melastigma
ENSHCOG00000015218	cstf3	100	88.488	ENSOGAG00000010229	CSTF3	98	88.858	Otolemur_garnettii
ENSHCOG00000015218	cstf3	88	90.174	ENSOARG00000017271	CSTF3	97	90.174	Ovis_aries
ENSHCOG00000015218	cstf3	99	88.068	ENSPPAG00000027358	CSTF3	99	88.034	Pan_paniscus
ENSHCOG00000015218	cstf3	100	88.719	ENSPPRG00000016852	CSTF3	98	89.235	Panthera_pardus
ENSHCOG00000015218	cstf3	100	88.719	ENSPTIG00000008716	CSTF3	98	89.235	Panthera_tigris_altaica
ENSHCOG00000015218	cstf3	100	88.858	ENSPTRG00000003485	CSTF3	98	89.377	Pan_troglodytes
ENSHCOG00000015218	cstf3	100	88.858	ENSPANG00000013722	CSTF3	97	94.407	Papio_anubis
ENSHCOG00000015218	cstf3	100	91.074	ENSPKIG00000023648	cstf3	98	91.915	Paramormyrops_kingsleyae
ENSHCOG00000015218	cstf3	100	88.579	ENSPSIG00000009173	CSTF3	100	88.579	Pelodiscus_sinensis
ENSHCOG00000015218	cstf3	76	95.438	ENSPMGG00000000164	cstf3	99	95.438	Periophthalmus_magnuspinnatus
ENSHCOG00000015218	cstf3	100	88.997	ENSPEMG00000011481	Cstf3	98	89.235	Peromyscus_maniculatus_bairdii
ENSHCOG00000015218	cstf3	99	78.310	ENSPMAG00000007282	cstf3	98	78.561	Petromyzon_marinus
ENSHCOG00000015218	cstf3	100	74.548	ENSPCIG00000030419	-	89	75.530	Phascolarctos_cinereus
ENSHCOG00000015218	cstf3	100	85.953	ENSPCIG00000026406	-	100	89.600	Phascolarctos_cinereus
ENSHCOG00000015218	cstf3	100	92.458	ENSPFOG00000017239	cstf3	100	92.458	Poecilia_formosa
ENSHCOG00000015218	cstf3	100	93.017	ENSPLAG00000009456	cstf3	100	93.017	Poecilia_latipinna
ENSHCOG00000015218	cstf3	100	92.877	ENSPMEG00000010320	cstf3	100	92.877	Poecilia_mexicana
ENSHCOG00000015218	cstf3	100	92.978	ENSPREG00000013549	cstf3	100	92.978	Poecilia_reticulata
ENSHCOG00000015218	cstf3	100	88.858	ENSPPYG00000003375	CSTF3	98	89.377	Pongo_abelii
ENSHCOG00000015218	cstf3	71	95.122	ENSPCAG00000008025	-	69	95.122	Procavia_capensis
ENSHCOG00000015218	cstf3	100	85.434	ENSPCOG00000014417	CSTF3	98	85.897	Propithecus_coquereli
ENSHCOG00000015218	cstf3	100	85.097	ENSPVAG00000002350	CSTF3	98	85.552	Pteropus_vampyrus
ENSHCOG00000015218	cstf3	99	94.026	ENSPNYG00000018259	cstf3	99	94.000	Pundamilia_nyererei
ENSHCOG00000015218	cstf3	100	91.353	ENSPNAG00000020182	cstf3	98	92.057	Pygocentrus_nattereri
ENSHCOG00000015218	cstf3	88	89.600	ENSRNOG00000012089	Cstf3	100	89.600	Rattus_norvegicus
ENSHCOG00000015218	cstf3	99	89.689	ENSRBIG00000044258	CSTF3	100	90.080	Rhinopithecus_bieti
ENSHCOG00000015218	cstf3	100	88.858	ENSRROG00000043450	CSTF3	100	90.080	Rhinopithecus_roxellana
ENSHCOG00000015218	cstf3	100	88.858	ENSSBOG00000024764	CSTF3	97	93.960	Saimiri_boliviensis_boliviensis
ENSHCOG00000015218	cstf3	99	88.842	ENSSHAG00000018128	-	98	88.810	Sarcophilus_harrisii
ENSHCOG00000015218	cstf3	100	79.944	ENSSHAG00000003135	-	98	80.737	Sarcophilus_harrisii
ENSHCOG00000015218	cstf3	100	90.934	ENSSFOG00015022133	cstf3	98	91.631	Scleropages_formosus
ENSHCOG00000015218	cstf3	100	92.877	ENSSMAG00000002197	cstf3	100	92.877	Scophthalmus_maximus
ENSHCOG00000015218	cstf3	100	93.715	ENSSDUG00000020426	cstf3	100	93.715	Seriola_dumerili
ENSHCOG00000015218	cstf3	100	93.994	ENSSLDG00000025649	cstf3	100	95.203	Seriola_lalandi_dorsalis
ENSHCOG00000015218	cstf3	100	88.579	ENSSARG00000000391	CSTF3	98	89.093	Sorex_araneus
ENSHCOG00000015218	cstf3	96	88.567	ENSSPUG00000010546	CSTF3	100	88.567	Sphenodon_punctatus
ENSHCOG00000015218	cstf3	100	93.855	ENSSPAG00000004958	cstf3	100	93.855	Stegastes_partitus
ENSHCOG00000015218	cstf3	99	88.424	ENSSSCG00000040954	CSTF3	99	89.235	Sus_scrofa
ENSHCOG00000015218	cstf3	99	88.842	ENSTGUG00000005010	CSTF3	99	88.952	Taeniopygia_guttata
ENSHCOG00000015218	cstf3	100	92.877	ENSTRUG00000004959	cstf3	100	92.877	Takifugu_rubripes
ENSHCOG00000015218	cstf3	99	92.655	ENSTNIG00000013811	cstf3	98	92.898	Tetraodon_nigroviridis
ENSHCOG00000015218	cstf3	88	87.480	ENSTBEG00000001544	CSTF3	89	87.480	Tupaia_belangeri
ENSHCOG00000015218	cstf3	100	86.072	ENSTTRG00000016366	CSTF3	98	86.544	Tursiops_truncatus
ENSHCOG00000015218	cstf3	99	89.124	ENSUMAG00000018971	CSTF3	100	89.760	Ursus_maritimus
ENSHCOG00000015218	cstf3	100	88.719	ENSVPAG00000007800	CSTF3	98	89.235	Vicugna_pacos
ENSHCOG00000015218	cstf3	99	89.915	ENSVVUG00000014938	CSTF3	100	90.080	Vulpes_vulpes
ENSHCOG00000015218	cstf3	88	74.219	ENSXETG00000021399	cstf3	99	76.013	Xenopus_tropicalis
ENSHCOG00000015218	cstf3	66	41.494	ENSXETG00000017946	-	99	41.250	Xenopus_tropicalis
ENSHCOG00000015218	cstf3	88	93.740	ENSXCOG00000011741	cstf3	100	93.740	Xiphophorus_couchianus
ENSHCOG00000015218	cstf3	100	92.179	ENSXMAG00000009545	cstf3	100	92.179	Xiphophorus_maculatus