EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000015423 (Gene tree)
Gene ID: 109511037
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 5885 bases
Position: chrKV879800.1:508302-514186
Accession: 109511037
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000012388	PRP21_like_P	PF12230.8	4.8e-51	1	1
ENSHCOP00000012388	Surp	PF01805.20	4.4e-46	1	2
ENSHCOP00000012388	Surp	PF01805.20	4.4e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000026903	-	2736	XM_019861774	ENSHCOP00000012388	781 (aa)	XP_019717333	UPI00094E5F68

Gene Model

Click here to download ENSHCOG00000015423's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000015423's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000015423	sf3a1	99	81.419	ENSG00000099995	SF3A1	100	80.252	Homo_sapiens
ENSHCOG00000015423	sf3a1	100	89.835	ENSAPOG00000020465	sf3a1	100	90.089	Acanthochromis_polyacanthus
ENSHCOG00000015423	sf3a1	98	81.356	ENSAMEG00000007737	SF3A1	100	80.176	Ailuropoda_melanoleuca
ENSHCOG00000015423	sf3a1	100	89.199	ENSACIG00000020672	sf3a1	100	89.454	Amphilophus_citrinellus
ENSHCOG00000015423	sf3a1	100	89.708	ENSAOCG00000003060	sf3a1	100	89.962	Amphiprion_ocellaris
ENSHCOG00000015423	sf3a1	100	89.835	ENSAPEG00000010735	sf3a1	100	90.089	Amphiprion_percula
ENSHCOG00000015423	sf3a1	98	89.221	ENSATEG00000021201	sf3a1	98	88.803	Anabas_testudineus
ENSHCOG00000015423	sf3a1	97	81.266	ENSAPLG00000009057	SF3A1	100	81.026	Anas_platyrhynchos
ENSHCOG00000015423	sf3a1	100	77.627	ENSACAG00000009415	SF3A1	100	78.492	Anolis_carolinensis
ENSHCOG00000015423	sf3a1	99	80.774	ENSANAG00000032045	SF3A1	100	80.377	Aotus_nancymaae
ENSHCOG00000015423	sf3a1	100	89.045	ENSACLG00000012622	sf3a1	100	90.318	Astatotilapia_calliptera
ENSHCOG00000015423	sf3a1	99	84.841	ENSAMXG00000005382	sf3a1	99	86.369	Astyanax_mexicanus
ENSHCOG00000015423	sf3a1	99	80.516	ENSBTAG00000003390	SF3A1	100	80.252	Bos_taurus
ENSHCOG00000015423	sf3a1	80	45.136	WBGene00004188	prp-21	98	42.249	Caenorhabditis_elegans
ENSHCOG00000015423	sf3a1	99	80.645	ENSCJAG00000010370	SF3A1	100	80.252	Callithrix_jacchus
ENSHCOG00000015423	sf3a1	99	80.774	ENSCAFG00000012559	SF3A1	100	80.377	Canis_familiaris
ENSHCOG00000015423	sf3a1	99	80.774	ENSCAFG00020000838	SF3A1	100	80.377	Canis_lupus_dingo
ENSHCOG00000015423	sf3a1	99	80.645	ENSCHIG00000018642	SF3A1	100	80.377	Capra_hircus
ENSHCOG00000015423	sf3a1	99	80.774	ENSTSYG00000004739	SF3A1	100	80.377	Carlito_syrichta
ENSHCOG00000015423	sf3a1	95	66.263	ENSCAPG00000015414	SF3A1	97	66.488	Cavia_aperea
ENSHCOG00000015423	sf3a1	99	81.161	ENSCPOG00000014589	SF3A1	100	80.252	Cavia_porcellus
ENSHCOG00000015423	sf3a1	99	80.774	ENSCCAG00000032006	SF3A1	100	80.377	Cebus_capucinus
ENSHCOG00000015423	sf3a1	99	80.774	ENSCATG00000029241	SF3A1	100	80.252	Cercocebus_atys
ENSHCOG00000015423	sf3a1	99	80.516	ENSCLAG00000006508	SF3A1	100	80.126	Chinchilla_lanigera
ENSHCOG00000015423	sf3a1	99	80.774	ENSCSAG00000009470	SF3A1	100	80.252	Chlorocebus_sabaeus
ENSHCOG00000015423	sf3a1	59	85.714	ENSCHOG00000005201	SF3A1	65	87.342	Choloepus_hoffmanni
ENSHCOG00000015423	sf3a1	100	78.365	ENSCPBG00000007595	SF3A1	100	80.051	Chrysemys_picta_bellii
ENSHCOG00000015423	sf3a1	98	51.646	ENSCING00000008526	-	98	50.826	Ciona_intestinalis
ENSHCOG00000015423	sf3a1	98	50.721	ENSCSAVG00000005608	-	100	51.285	Ciona_savignyi
ENSHCOG00000015423	sf3a1	99	80.774	ENSCANG00000033564	SF3A1	100	80.252	Colobus_angolensis_palliatus
ENSHCOG00000015423	sf3a1	97	81.447	ENSCGRG00001008933	Sf3a1	100	80.000	Cricetulus_griseus_chok1gshd
ENSHCOG00000015423	sf3a1	97	81.447	ENSCGRG00000006127	Sf3a1	100	80.000	Cricetulus_griseus_crigri
ENSHCOG00000015423	sf3a1	100	87.548	ENSCSEG00000010792	sf3a1	100	88.945	Cynoglossus_semilaevis
ENSHCOG00000015423	sf3a1	100	88.153	ENSCVAG00000004560	sf3a1	100	88.535	Cyprinodon_variegatus
ENSHCOG00000015423	sf3a1	100	83.990	ENSDARG00000041887	sf3a1	100	86.286	Danio_rerio
ENSHCOG00000015423	sf3a1	99	80.928	ENSDNOG00000010629	SF3A1	98	80.867	Dasypus_novemcinctus
ENSHCOG00000015423	sf3a1	99	81.419	ENSDORG00000005613	Sf3a1	100	80.377	Dipodomys_ordii
ENSHCOG00000015423	sf3a1	86	58.974	FBgn0266917	Sf3a1	97	51.180	Drosophila_melanogaster
ENSHCOG00000015423	sf3a1	85	79.910	ENSETEG00000017194	SF3A1	95	81.138	Echinops_telfairi
ENSHCOG00000015423	sf3a1	98	66.998	ENSEBUG00000001285	sf3a1	96	67.662	Eptatretus_burgeri
ENSHCOG00000015423	sf3a1	99	80.645	ENSEASG00005010254	SF3A1	100	80.252	Equus_asinus_asinus
ENSHCOG00000015423	sf3a1	99	80.645	ENSECAG00000023962	SF3A1	100	80.252	Equus_caballus
ENSHCOG00000015423	sf3a1	74	91.803	ENSEEUG00000003159	SF3A1	83	91.803	Erinaceus_europaeus
ENSHCOG00000015423	sf3a1	100	83.650	ENSELUG00000022578	sf3a1	100	84.918	Esox_lucius
ENSHCOG00000015423	sf3a1	99	80.645	ENSFCAG00000011932	SF3A1	100	80.252	Felis_catus
ENSHCOG00000015423	sf3a1	97	80.845	ENSFALG00000006944	SF3A1	100	79.823	Ficedula_albicollis
ENSHCOG00000015423	sf3a1	99	80.774	ENSFDAG00000009560	SF3A1	100	80.252	Fukomys_damarensis
ENSHCOG00000015423	sf3a1	100	87.563	ENSFHEG00000010866	sf3a1	100	88.452	Fundulus_heteroclitus
ENSHCOG00000015423	sf3a1	100	85.350	ENSGMOG00000016024	sf3a1	100	86.752	Gadus_morhua
ENSHCOG00000015423	sf3a1	97	81.506	ENSGALG00000007937	SF3A1	100	80.202	Gallus_gallus
ENSHCOG00000015423	sf3a1	100	88.804	ENSGAFG00000009111	sf3a1	100	89.059	Gambusia_affinis
ENSHCOG00000015423	sf3a1	100	87.072	ENSGACG00000011893	sf3a1	100	87.072	Gasterosteus_aculeatus
ENSHCOG00000015423	sf3a1	96	78.084	ENSGAGG00000000762	SF3A1	99	79.842	Gopherus_agassizii
ENSHCOG00000015423	sf3a1	99	81.419	ENSGGOG00000012631	SF3A1	100	80.252	Gorilla_gorilla
ENSHCOG00000015423	sf3a1	100	90.446	ENSHBUG00000015795	sf3a1	100	90.446	Haplochromis_burtoni
ENSHCOG00000015423	sf3a1	99	80.645	ENSHGLG00000007907	SF3A1	100	80.252	Heterocephalus_glaber_female
ENSHCOG00000015423	sf3a1	99	80.645	ENSHGLG00100013799	SF3A1	100	80.252	Heterocephalus_glaber_male
ENSHCOG00000015423	sf3a1	98	83.203	ENSIPUG00000002470	sf3a1	98	84.896	Ictalurus_punctatus
ENSHCOG00000015423	sf3a1	99	80.645	ENSSTOG00000013892	SF3A1	100	80.252	Ictidomys_tridecemlineatus
ENSHCOG00000015423	sf3a1	98	81.226	ENSJJAG00000022566	Sf3a1	100	80.276	Jaculus_jaculus
ENSHCOG00000015423	sf3a1	100	87.659	ENSKMAG00000002400	sf3a1	100	88.550	Kryptolebias_marmoratus
ENSHCOG00000015423	sf3a1	100	89.668	ENSLBEG00000022974	sf3a1	100	89.668	Labrus_bergylta
ENSHCOG00000015423	sf3a1	100	80.832	ENSLACG00000003565	SF3A1	100	81.899	Latimeria_chalumnae
ENSHCOG00000015423	sf3a1	100	83.671	ENSLOCG00000008251	sf3a1	99	85.190	Lepisosteus_oculatus
ENSHCOG00000015423	sf3a1	98	54.044	ENSLAFG00000026032	-	97	54.113	Loxodonta_africana
ENSHCOG00000015423	sf3a1	99	80.903	ENSLAFG00000000448	SF3A1	100	80.629	Loxodonta_africana
ENSHCOG00000015423	sf3a1	99	80.645	ENSMFAG00000031979	SF3A1	100	80.126	Macaca_fascicularis
ENSHCOG00000015423	sf3a1	99	80.645	ENSMMUG00000005547	SF3A1	100	80.126	Macaca_mulatta
ENSHCOG00000015423	sf3a1	99	80.516	ENSMNEG00000037229	SF3A1	100	80.000	Macaca_nemestrina
ENSHCOG00000015423	sf3a1	99	80.774	ENSMLEG00000041908	SF3A1	100	80.252	Mandrillus_leucophaeus
ENSHCOG00000015423	sf3a1	98	90.222	ENSMAMG00000006460	sf3a1	96	90.482	Mastacembelus_armatus
ENSHCOG00000015423	sf3a1	100	89.045	ENSMZEG00005009633	sf3a1	100	90.318	Maylandia_zebra
ENSHCOG00000015423	sf3a1	97	81.506	ENSMGAG00000001330	SF3A1	99	82.092	Meleagris_gallopavo
ENSHCOG00000015423	sf3a1	94	77.793	ENSMAUG00000020317	Sf3a1	94	78.202	Mesocricetus_auratus
ENSHCOG00000015423	sf3a1	99	80.903	ENSMICG00000010038	SF3A1	100	80.377	Microcebus_murinus
ENSHCOG00000015423	sf3a1	99	80.516	ENSMOCG00000008438	Sf3a1	100	80.126	Microtus_ochrogaster
ENSHCOG00000015423	sf3a1	100	88.107	ENSMMOG00000015588	sf3a1	99	88.363	Mola_mola
ENSHCOG00000015423	sf3a1	98	80.704	ENSMODG00000009270	SF3A1	100	80.377	Monodelphis_domestica
ENSHCOG00000015423	sf3a1	100	87.706	ENSMALG00000000148	sf3a1	100	88.973	Monopterus_albus
ENSHCOG00000015423	sf3a1	99	80.774	MGP_CAROLIEiJ_G0016029	Sf3a1	99	79.924	Mus_caroli
ENSHCOG00000015423	sf3a1	99	80.774	ENSMUSG00000002129	Sf3a1	99	79.924	Mus_musculus
ENSHCOG00000015423	sf3a1	99	80.645	MGP_PahariEiJ_G0016862	Sf3a1	99	79.798	Mus_pahari
ENSHCOG00000015423	sf3a1	99	80.774	MGP_SPRETEiJ_G0016870	Sf3a1	99	79.924	Mus_spretus
ENSHCOG00000015423	sf3a1	99	81.032	ENSMPUG00000013144	SF3A1	100	80.503	Mustela_putorius_furo
ENSHCOG00000015423	sf3a1	99	80.645	ENSMLUG00000002139	SF3A1	100	80.252	Myotis_lucifugus
ENSHCOG00000015423	sf3a1	98	81.747	ENSNGAG00000016977	Sf3a1	100	80.126	Nannospalax_galili
ENSHCOG00000015423	sf3a1	100	90.216	ENSNBRG00000016642	sf3a1	100	90.216	Neolamprologus_brichardi
ENSHCOG00000015423	sf3a1	99	80.774	ENSNLEG00000003686	SF3A1	100	80.252	Nomascus_leucogenys
ENSHCOG00000015423	sf3a1	94	73.978	ENSMEUG00000008741	SF3A1	100	72.966	Notamacropus_eugenii
ENSHCOG00000015423	sf3a1	98	81.226	ENSOPRG00000016636	SF3A1	100	80.252	Ochotona_princeps
ENSHCOG00000015423	sf3a1	98	81.356	ENSODEG00000002571	SF3A1	100	80.227	Octodon_degus
ENSHCOG00000015423	sf3a1	100	90.191	ENSONIG00000010848	sf3a1	100	90.191	Oreochromis_niloticus
ENSHCOG00000015423	sf3a1	99	80.645	ENSOCUG00000007633	SF3A1	100	80.252	Oryctolagus_cuniculus
ENSHCOG00000015423	sf3a1	96	88.446	ENSORLG00000013050	sf3a1	99	88.579	Oryzias_latipes
ENSHCOG00000015423	sf3a1	99	85.531	ENSORLG00020003236	sf3a1	97	86.194	Oryzias_latipes_hni
ENSHCOG00000015423	sf3a1	100	88.168	ENSORLG00015017411	sf3a1	100	88.295	Oryzias_latipes_hsok
ENSHCOG00000015423	sf3a1	100	89.186	ENSOMEG00000013362	sf3a1	100	89.186	Oryzias_melastigma
ENSHCOG00000015423	sf3a1	99	80.774	ENSOGAG00000012931	SF3A1	100	80.252	Otolemur_garnettii
ENSHCOG00000015423	sf3a1	99	79.355	ENSOARG00000006849	SF3A1	100	79.623	Ovis_aries
ENSHCOG00000015423	sf3a1	99	80.645	ENSPPAG00000041790	SF3A1	100	79.497	Pan_paniscus
ENSHCOG00000015423	sf3a1	99	80.645	ENSPPRG00000004391	SF3A1	100	80.252	Panthera_pardus
ENSHCOG00000015423	sf3a1	99	80.491	ENSPTIG00000000844	SF3A1	100	81.266	Panthera_tigris_altaica
ENSHCOG00000015423	sf3a1	99	81.419	ENSPTRG00000014240	SF3A1	100	80.252	Pan_troglodytes
ENSHCOG00000015423	sf3a1	99	80.774	ENSPANG00000020772	SF3A1	100	80.252	Papio_anubis
ENSHCOG00000015423	sf3a1	82	89.011	ENSPSIG00000012803	SF3A1	98	89.011	Pelodiscus_sinensis
ENSHCOG00000015423	sf3a1	98	86.632	ENSPMGG00000023096	sf3a1	100	87.795	Periophthalmus_magnuspinnatus
ENSHCOG00000015423	sf3a1	97	81.579	ENSPEMG00000009494	Sf3a1	100	80.126	Peromyscus_maniculatus_bairdii
ENSHCOG00000015423	sf3a1	68	76.147	ENSPMAG00000007139	-	100	72.139	Petromyzon_marinus
ENSHCOG00000015423	sf3a1	99	80.903	ENSPCIG00000022692	SF3A1	100	80.629	Phascolarctos_cinereus
ENSHCOG00000015423	sf3a1	100	79.543	ENSPFOG00000016768	sf3a1	100	79.468	Poecilia_formosa
ENSHCOG00000015423	sf3a1	100	88.706	ENSPLAG00000017268	sf3a1	100	88.959	Poecilia_latipinna
ENSHCOG00000015423	sf3a1	96	89.426	ENSPMEG00000019811	sf3a1	100	89.426	Poecilia_mexicana
ENSHCOG00000015423	sf3a1	100	88.706	ENSPREG00000010347	sf3a1	100	88.959	Poecilia_reticulata
ENSHCOG00000015423	sf3a1	99	80.774	ENSPPYG00000011707	SF3A1	100	80.252	Pongo_abelii
ENSHCOG00000015423	sf3a1	58	80.992	ENSPCAG00000003266	SF3A1	57	81.405	Procavia_capensis
ENSHCOG00000015423	sf3a1	99	80.645	ENSPCOG00000026630	SF3A1	100	80.252	Propithecus_coquereli
ENSHCOG00000015423	sf3a1	95	80.723	ENSPVAG00000017719	SF3A1	94	81.526	Pteropus_vampyrus
ENSHCOG00000015423	sf3a1	100	90.318	ENSPNYG00000018706	sf3a1	100	90.318	Pundamilia_nyererei
ENSHCOG00000015423	sf3a1	99	85.223	ENSPNAG00000003721	sf3a1	99	86.115	Pygocentrus_nattereri
ENSHCOG00000015423	sf3a1	99	80.774	ENSRNOG00000005218	Sf3a1	99	79.924	Rattus_norvegicus
ENSHCOG00000015423	sf3a1	99	80.774	ENSRBIG00000032167	SF3A1	100	80.252	Rhinopithecus_bieti
ENSHCOG00000015423	sf3a1	99	80.774	ENSRROG00000044908	SF3A1	100	80.252	Rhinopithecus_roxellana
ENSHCOG00000015423	sf3a1	94	81.361	ENSSBOG00000021960	SF3A1	98	82.186	Saimiri_boliviensis_boliviensis
ENSHCOG00000015423	sf3a1	100	77.041	ENSSHAG00000003666	SF3A1	99	78.316	Sarcophilus_harrisii
ENSHCOG00000015423	sf3a1	100	84.324	ENSSFOG00015004579	sf3a1	100	86.473	Scleropages_formosus
ENSHCOG00000015423	sf3a1	100	87.229	ENSSMAG00000004275	sf3a1	100	88.250	Scophthalmus_maximus
ENSHCOG00000015423	sf3a1	100	89.809	ENSSDUG00000022219	sf3a1	100	89.809	Seriola_dumerili
ENSHCOG00000015423	sf3a1	100	89.809	ENSSLDG00000012642	sf3a1	100	89.809	Seriola_lalandi_dorsalis
ENSHCOG00000015423	sf3a1	98	78.618	ENSSARG00000005960	SF3A1	99	78.879	Sorex_araneus
ENSHCOG00000015423	sf3a1	97	81.014	ENSSPUG00000018863	SF3A1	100	80.299	Sphenodon_punctatus
ENSHCOG00000015423	sf3a1	100	90.331	ENSSPAG00000011856	sf3a1	100	90.331	Stegastes_partitus
ENSHCOG00000015423	sf3a1	99	80.903	ENSSSCG00000010002	SF3A1	100	80.377	Sus_scrofa
ENSHCOG00000015423	sf3a1	97	81.291	ENSTGUG00000010547	SF3A1	99	81.877	Taeniopygia_guttata
ENSHCOG00000015423	sf3a1	100	87.229	ENSTRUG00000006118	sf3a1	100	87.229	Takifugu_rubripes
ENSHCOG00000015423	sf3a1	62	85.714	ENSTNIG00000005713	sf3a1	89	85.348	Tetraodon_nigroviridis
ENSHCOG00000015423	sf3a1	99	74.323	ENSTBEG00000012771	SF3A1	100	74.088	Tupaia_belangeri
ENSHCOG00000015423	sf3a1	99	80.541	ENSTTRG00000001535	SF3A1	100	80.276	Tursiops_truncatus
ENSHCOG00000015423	sf3a1	99	78.580	ENSUAMG00000006750	SF3A1	99	79.341	Ursus_americanus
ENSHCOG00000015423	sf3a1	100	80.282	ENSUMAG00000016665	SF3A1	100	80.410	Ursus_maritimus
ENSHCOG00000015423	sf3a1	99	80.774	ENSVVUG00000003075	SF3A1	100	80.377	Vulpes_vulpes
ENSHCOG00000015423	sf3a1	100	75.628	ENSXETG00000016144	sf3a1	96	82.186	Xenopus_tropicalis
ENSHCOG00000015423	sf3a1	100	88.422	ENSXCOG00000015653	sf3a1	100	88.677	Xiphophorus_couchianus
ENSHCOG00000015423	sf3a1	100	88.677	ENSXMAG00000002753	sf3a1	100	88.931	Xiphophorus_maculatus