EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000015633 (Gene tree)
Gene ID: 109520026
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 3823 bases
Position: chrKV880080.1:1531209-1535031
Accession: 109520026
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000025455	HVSL	PF09749.9	2.8e-58	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000026985	-	777	XM_019876963	ENSHCOP00000025455	258 (aa)	XP_019732522	-

Gene Model

Click here to download ENSHCOG00000015633's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000015633's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000015633	usb1	86	54.709	ENSG00000103005	USB1	99	55.399	Homo_sapiens
ENSHCOG00000015633	usb1	86	74.439	ENSAPOG00000011942	usb1	78	73.853	Acanthochromis_polyacanthus
ENSHCOG00000015633	usb1	99	49.442	ENSAMEG00000017205	USB1	81	53.917	Ailuropoda_melanoleuca
ENSHCOG00000015633	usb1	100	70.111	ENSACIG00000012234	usb1	81	75.799	Amphilophus_citrinellus
ENSHCOG00000015633	usb1	86	74.888	ENSAOCG00000014831	usb1	77	74.312	Amphiprion_ocellaris
ENSHCOG00000015633	usb1	86	74.888	ENSAPEG00000000296	usb1	77	74.312	Amphiprion_percula
ENSHCOG00000015633	usb1	86	76.126	ENSATEG00000009348	usb1	77	75.576	Anabas_testudineus
ENSHCOG00000015633	usb1	86	54.222	ENSAPLG00000002756	USB1	96	54.128	Anas_platyrhynchos
ENSHCOG00000015633	usb1	86	50.667	ENSACAG00000015481	USB1	95	50.917	Anolis_carolinensis
ENSHCOG00000015633	usb1	86	53.363	ENSANAG00000035640	USB1	82	53.456	Aotus_nancymaae
ENSHCOG00000015633	usb1	87	74.107	ENSACLG00000020586	usb1	78	73.516	Astatotilapia_calliptera
ENSHCOG00000015633	usb1	86	63.229	ENSAMXG00000040146	usb1	72	62.963	Astyanax_mexicanus
ENSHCOG00000015633	usb1	99	50.193	ENSBTAG00000015758	USB1	82	52.315	Bos_taurus
ENSHCOG00000015633	usb1	86	54.709	ENSCJAG00000011733	USB1	82	54.839	Callithrix_jacchus
ENSHCOG00000015633	usb1	86	53.363	ENSCAFG00000008556	USB1	58	52.995	Canis_familiaris
ENSHCOG00000015633	usb1	99	50.000	ENSCAFG00020009263	USB1	81	53.241	Canis_lupus_dingo
ENSHCOG00000015633	usb1	99	49.807	ENSCHIG00000024290	USB1	82	51.852	Capra_hircus
ENSHCOG00000015633	usb1	86	53.363	ENSTSYG00000006997	USB1	82	53.917	Carlito_syrichta
ENSHCOG00000015633	usb1	86	43.498	ENSCAPG00000009057	USB1	92	43.519	Cavia_aperea
ENSHCOG00000015633	usb1	99	50.000	ENSCPOG00000014325	USB1	80	53.704	Cavia_porcellus
ENSHCOG00000015633	usb1	86	54.260	ENSCCAG00000022132	USB1	82	54.378	Cebus_capucinus
ENSHCOG00000015633	usb1	86	54.709	ENSCATG00000032174	USB1	82	54.839	Cercocebus_atys
ENSHCOG00000015633	usb1	66	52.907	ENSCLAG00000007363	USB1	98	52.907	Chinchilla_lanigera
ENSHCOG00000015633	usb1	86	54.260	ENSCSAG00000004783	USB1	82	54.378	Chlorocebus_sabaeus
ENSHCOG00000015633	usb1	86	54.260	ENSCPBG00000026943	USB1	78	54.167	Chrysemys_picta_bellii
ENSHCOG00000015633	usb1	86	32.189	ENSCING00000011490	-	81	33.486	Ciona_intestinalis
ENSHCOG00000015633	usb1	90	31.250	ENSCSAVG00000000894	-	75	32.692	Ciona_savignyi
ENSHCOG00000015633	usb1	93	52.479	ENSCANG00000037135	USB1	82	55.300	Colobus_angolensis_palliatus
ENSHCOG00000015633	usb1	99	51.908	ENSCGRG00001011243	USB1	81	56.019	Cricetulus_griseus_chok1gshd
ENSHCOG00000015633	usb1	99	51.908	ENSCGRG00000013252	USB1	81	56.019	Cricetulus_griseus_crigri
ENSHCOG00000015633	usb1	99	61.091	ENSCSEG00000013881	usb1	99	60.949	Cynoglossus_semilaevis
ENSHCOG00000015633	usb1	88	68.831	ENSCVAG00000009252	usb1	95	68.326	Cyprinodon_variegatus
ENSHCOG00000015633	usb1	97	54.980	ENSDARG00000003841	usb1	77	59.155	Danio_rerio
ENSHCOG00000015633	usb1	99	51.351	ENSDORG00000001888	Usb1	82	54.630	Dipodomys_ordii
ENSHCOG00000015633	usb1	94	35.019	FBgn0037713	CG16790	79	38.164	Drosophila_melanogaster
ENSHCOG00000015633	usb1	99	43.295	ENSETEG00000019682	USB1	98	43.295	Echinops_telfairi
ENSHCOG00000015633	usb1	91	43.621	ENSEBUG00000005889	usb1	76	45.000	Eptatretus_burgeri
ENSHCOG00000015633	usb1	99	51.737	ENSEASG00005005484	USB1	82	54.167	Equus_asinus_asinus
ENSHCOG00000015633	usb1	99	51.538	ENSECAG00000019493	USB1	75	53.917	Equus_caballus
ENSHCOG00000015633	usb1	66	48.837	ENSEEUG00000000154	USB1	65	48.837	Erinaceus_europaeus
ENSHCOG00000015633	usb1	86	62.500	ENSELUG00000010974	usb1	80	62.100	Esox_lucius
ENSHCOG00000015633	usb1	86	53.363	ENSFCAG00000002693	USB1	81	52.995	Felis_catus
ENSHCOG00000015633	usb1	86	54.260	ENSFALG00000006876	USB1	79	54.976	Ficedula_albicollis
ENSHCOG00000015633	usb1	99	52.107	ENSFDAG00000010052	USB1	98	51.341	Fukomys_damarensis
ENSHCOG00000015633	usb1	87	62.295	ENSFHEG00000012334	usb1	75	72.193	Fundulus_heteroclitus
ENSHCOG00000015633	usb1	86	71.749	ENSGMOG00000004228	usb1	98	71.689	Gadus_morhua
ENSHCOG00000015633	usb1	86	53.363	ENSGALG00000035604	USB1	85	53.211	Gallus_gallus
ENSHCOG00000015633	usb1	99	64.234	ENSGAFG00000021890	usb1	79	72.018	Gambusia_affinis
ENSHCOG00000015633	usb1	86	71.749	ENSGACG00000003257	usb1	79	71.101	Gasterosteus_aculeatus
ENSHCOG00000015633	usb1	99	49.438	ENSGAGG00000022572	USB1	79	53.704	Gopherus_agassizii
ENSHCOG00000015633	usb1	86	55.157	ENSGGOG00000017147	USB1	82	55.300	Gorilla_gorilla
ENSHCOG00000015633	usb1	87	74.107	ENSHBUG00000009823	usb1	78	73.516	Haplochromis_burtoni
ENSHCOG00000015633	usb1	99	50.000	ENSHGLG00000016078	USB1	79	53.456	Heterocephalus_glaber_female
ENSHCOG00000015633	usb1	99	50.000	ENSHGLG00100005562	USB1	79	53.456	Heterocephalus_glaber_male
ENSHCOG00000015633	usb1	99	54.007	ENSIPUG00000008601	usb1	75	62.037	Ictalurus_punctatus
ENSHCOG00000015633	usb1	99	48.718	ENSSTOG00000007548	USB1	87	50.206	Ictidomys_tridecemlineatus
ENSHCOG00000015633	usb1	99	50.575	ENSJJAG00000021859	Usb1	81	54.630	Jaculus_jaculus
ENSHCOG00000015633	usb1	86	71.749	ENSKMAG00000007200	usb1	77	71.101	Kryptolebias_marmoratus
ENSHCOG00000015633	usb1	92	63.291	ENSLBEG00000008452	usb1	65	68.966	Labrus_bergylta
ENSHCOG00000015633	usb1	74	56.771	ENSLACG00000000105	USB1	64	56.989	Latimeria_chalumnae
ENSHCOG00000015633	usb1	97	55.378	ENSLOCG00000000465	usb1	77	59.174	Lepisosteus_oculatus
ENSHCOG00000015633	usb1	99	42.804	ENSLAFG00000002267	USB1	80	45.740	Loxodonta_africana
ENSHCOG00000015633	usb1	86	54.709	ENSMFAG00000003926	USB1	82	54.839	Macaca_fascicularis
ENSHCOG00000015633	usb1	86	54.709	ENSMMUG00000022669	USB1	82	54.839	Macaca_mulatta
ENSHCOG00000015633	usb1	86	54.260	ENSMNEG00000042487	USB1	82	54.378	Macaca_nemestrina
ENSHCOG00000015633	usb1	86	54.709	ENSMLEG00000028756	USB1	82	54.839	Mandrillus_leucophaeus
ENSHCOG00000015633	usb1	99	64.311	ENSMAMG00000015092	usb1	78	75.229	Mastacembelus_armatus
ENSHCOG00000015633	usb1	87	74.107	ENSMZEG00005010008	usb1	78	73.516	Maylandia_zebra
ENSHCOG00000015633	usb1	99	50.575	ENSMAUG00000007832	Usb1	81	54.839	Mesocricetus_auratus
ENSHCOG00000015633	usb1	86	55.157	ENSMICG00000004900	USB1	82	55.300	Microcebus_murinus
ENSHCOG00000015633	usb1	99	51.724	ENSMOCG00000022647	Usb1	81	56.481	Microtus_ochrogaster
ENSHCOG00000015633	usb1	99	68.605	ENSMMOG00000000490	usb1	84	72.350	Mola_mola
ENSHCOG00000015633	usb1	83	50.463	ENSMODG00000014067	USB1	81	50.463	Monodelphis_domestica
ENSHCOG00000015633	usb1	87	71.875	ENSMALG00000005930	usb1	77	71.560	Monopterus_albus
ENSHCOG00000015633	usb1	99	52.290	MGP_CAROLIEiJ_G0031421	Usb1	99	53.571	Mus_caroli
ENSHCOG00000015633	usb1	99	52.290	ENSMUSG00000031792	Usb1	99	53.571	Mus_musculus
ENSHCOG00000015633	usb1	99	51.724	MGP_PahariEiJ_G0023019	Usb1	100	56.410	Mus_pahari
ENSHCOG00000015633	usb1	99	52.290	MGP_SPRETEiJ_G0032540	Usb1	81	55.556	Mus_spretus
ENSHCOG00000015633	usb1	99	47.955	ENSMPUG00000004684	USB1	77	52.315	Mustela_putorius_furo
ENSHCOG00000015633	usb1	86	54.260	ENSMLUG00000007400	USB1	94	54.167	Myotis_lucifugus
ENSHCOG00000015633	usb1	99	52.652	ENSNGAG00000009703	Usb1	81	56.221	Nannospalax_galili
ENSHCOG00000015633	usb1	100	63.566	ENSNBRG00000008747	usb1	100	70.561	Neolamprologus_brichardi
ENSHCOG00000015633	usb1	76	57.576	ENSNLEG00000003340	USB1	77	57.812	Nomascus_leucogenys
ENSHCOG00000015633	usb1	99	50.192	ENSODEG00000016214	USB1	81	54.167	Octodon_degus
ENSHCOG00000015633	usb1	99	65.591	ENSONIG00000011063	usb1	78	74.312	Oreochromis_niloticus
ENSHCOG00000015633	usb1	86	51.786	ENSOANG00000012118	USB1	91	51.376	Ornithorhynchus_anatinus
ENSHCOG00000015633	usb1	87	73.214	ENSORLG00000012479	usb1	80	72.936	Oryzias_latipes
ENSHCOG00000015633	usb1	87	72.321	ENSORLG00020018671	usb1	80	72.477	Oryzias_latipes_hni
ENSHCOG00000015633	usb1	87	73.661	ENSORLG00015009679	usb1	81	73.394	Oryzias_latipes_hsok
ENSHCOG00000015633	usb1	87	76.786	ENSOMEG00000012930	usb1	79	76.606	Oryzias_melastigma
ENSHCOG00000015633	usb1	99	47.876	ENSOGAG00000003273	USB1	98	47.876	Otolemur_garnettii
ENSHCOG00000015633	usb1	86	52.466	ENSOARG00000001107	USB1	83	52.315	Ovis_aries
ENSHCOG00000015633	usb1	86	54.709	ENSPPAG00000042137	USB1	82	54.839	Pan_paniscus
ENSHCOG00000015633	usb1	86	52.915	ENSPPRG00000024797	USB1	81	52.535	Panthera_pardus
ENSHCOG00000015633	usb1	86	52.466	ENSPTIG00000007506	USB1	81	52.074	Panthera_tigris_altaica
ENSHCOG00000015633	usb1	82	55.869	ENSPTRG00000008172	USB1	99	55.869	Pan_troglodytes
ENSHCOG00000015633	usb1	86	54.709	ENSPANG00000025138	USB1	82	54.839	Papio_anubis
ENSHCOG00000015633	usb1	98	57.255	ENSPKIG00000015109	usb1	73	62.037	Paramormyrops_kingsleyae
ENSHCOG00000015633	usb1	86	42.222	ENSPSIG00000004305	USB1	96	41.743	Pelodiscus_sinensis
ENSHCOG00000015633	usb1	88	65.044	ENSPMGG00000017725	usb1	83	65.741	Periophthalmus_magnuspinnatus
ENSHCOG00000015633	usb1	99	50.000	ENSPEMG00000016183	Usb1	80	54.839	Peromyscus_maniculatus_bairdii
ENSHCOG00000015633	usb1	86	48.444	ENSPMAG00000000462	usb1	91	48.148	Petromyzon_marinus
ENSHCOG00000015633	usb1	99	65.091	ENSPFOG00000011130	usb1	78	73.394	Poecilia_formosa
ENSHCOG00000015633	usb1	99	64.727	ENSPLAG00000009820	usb1	78	72.936	Poecilia_latipinna
ENSHCOG00000015633	usb1	99	65.455	ENSPMEG00000006402	usb1	78	73.394	Poecilia_mexicana
ENSHCOG00000015633	usb1	87	63.525	ENSPREG00000001047	usb1	76	74.332	Poecilia_reticulata
ENSHCOG00000015633	usb1	76	54.271	ENSPPYG00000007401	USB1	77	54.404	Pongo_abelii
ENSHCOG00000015633	usb1	99	50.965	ENSPCOG00000022612	USB1	98	50.965	Propithecus_coquereli
ENSHCOG00000015633	usb1	99	50.000	ENSPVAG00000004613	USB1	98	50.000	Pteropus_vampyrus
ENSHCOG00000015633	usb1	100	66.071	ENSPNYG00000022262	usb1	78	73.973	Pundamilia_nyererei
ENSHCOG00000015633	usb1	86	60.987	ENSPNAG00000011736	usb1	73	60.648	Pygocentrus_nattereri
ENSHCOG00000015633	usb1	99	52.672	ENSRNOG00000013216	Usb1	81	55.760	Rattus_norvegicus
ENSHCOG00000015633	usb1	82	55.399	ENSRBIG00000044466	USB1	99	55.399	Rhinopithecus_bieti
ENSHCOG00000015633	usb1	86	54.709	ENSRROG00000029211	USB1	82	54.839	Rhinopithecus_roxellana
ENSHCOG00000015633	usb1	86	54.709	ENSSBOG00000029362	USB1	82	54.839	Saimiri_boliviensis_boliviensis
ENSHCOG00000015633	usb1	84	47.926	ENSSHAG00000006993	USB1	86	47.926	Sarcophilus_harrisii
ENSHCOG00000015633	usb1	86	63.514	ENSSFOG00015023663	usb1	68	63.256	Scleropages_formosus
ENSHCOG00000015633	usb1	87	68.908	ENSSMAG00000015834	usb1	79	68.670	Scophthalmus_maximus
ENSHCOG00000015633	usb1	90	73.276	ENSSDUG00000002949	usb1	81	74.312	Seriola_dumerili
ENSHCOG00000015633	usb1	87	75.000	ENSSLDG00000014174	usb1	78	74.429	Seriola_lalandi_dorsalis
ENSHCOG00000015633	usb1	82	51.174	ENSSPUG00000006741	USB1	99	51.174	Sphenodon_punctatus
ENSHCOG00000015633	usb1	99	63.732	ENSSPAG00000007484	usb1	77	73.394	Stegastes_partitus
ENSHCOG00000015633	usb1	99	48.699	ENSSSCG00000002807	USB1	81	53.456	Sus_scrofa
ENSHCOG00000015633	usb1	81	56.398	ENSTGUG00000004792	USB1	83	56.398	Taeniopygia_guttata
ENSHCOG00000015633	usb1	99	66.045	ENSTRUG00000021069	usb1	81	71.429	Takifugu_rubripes
ENSHCOG00000015633	usb1	99	59.302	ENSTNIG00000000626	usb1	81	61.290	Tetraodon_nigroviridis
ENSHCOG00000015633	usb1	86	39.462	ENSTBEG00000001507	USB1	93	39.352	Tupaia_belangeri
ENSHCOG00000015633	usb1	99	49.814	ENSUAMG00000016823	USB1	81	54.378	Ursus_americanus
ENSHCOG00000015633	usb1	82	54.930	ENSUMAG00000021369	USB1	99	54.930	Ursus_maritimus
ENSHCOG00000015633	usb1	99	49.810	ENSVVUG00000023700	USB1	84	52.995	Vulpes_vulpes
ENSHCOG00000015633	usb1	99	51.362	ENSXETG00000013795	usb1	87	55.300	Xenopus_tropicalis
ENSHCOG00000015633	usb1	86	72.646	ENSXMAG00000024687	usb1	64	72.018	Xiphophorus_maculatus