EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000015692 (Gene tree)
Gene ID: 109522772
Gene Symbol: si:dkey-34d22.5
Alias: -
Full Name: ras-related protein Rab-39B-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 3671 bases
Position: chrKV880155.1:58776-62446
Accession: 109522772
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000025504	MMR_HSR1	PF01926.23	5.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000019737	-	2957	XM_019881555	ENSHCOP00000025504	217 (aa)	XP_019737114	UPI00094E1658

Gene Model

Click here to download ENSHCOG00000015692's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000015692's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000015692	si:dkey-34d22.5	80	41.573	ENSHCOG00000005802	RAB9A	80	41.573
ENSHCOG00000015692	si:dkey-34d22.5	97	34.123	ENSHCOG00000013095	rab25a	96	34.123
ENSHCOG00000015692	si:dkey-34d22.5	99	42.991	ENSHCOG00000013180	-	97	42.991
ENSHCOG00000015692	si:dkey-34d22.5	87	37.566	ENSHCOG00000013130	rab6bb	88	37.566
ENSHCOG00000015692	si:dkey-34d22.5	87	42.553	ENSHCOG00000014428	rab2a	88	42.105
ENSHCOG00000015692	si:dkey-34d22.5	75	30.539	ENSHCOG00000015161	-	77	30.539
ENSHCOG00000015692	si:dkey-34d22.5	82	37.234	ENSHCOG00000005024	rab9b	91	37.234
ENSHCOG00000015692	si:dkey-34d22.5	80	39.884	ENSHCOG00000007187	rab25b	73	39.884
ENSHCOG00000015692	si:dkey-34d22.5	71	31.818	ENSHCOG00000018456	si:ch73-116o1.2	81	31.792
ENSHCOG00000015692	si:dkey-34d22.5	74	30.488	ENSHCOG00000002948	dnajc27	59	30.488
ENSHCOG00000015692	si:dkey-34d22.5	98	53.521	ENSHCOG00000019732	-	98	53.521
ENSHCOG00000015692	si:dkey-34d22.5	77	37.500	ENSHCOG00000004662	rab5c	83	37.037
ENSHCOG00000015692	si:dkey-34d22.5	98	52.582	ENSHCOG00000003981	RAB39B	98	52.582
ENSHCOG00000015692	si:dkey-34d22.5	76	38.462	ENSHCOG00000004086	rab9a	82	38.462
ENSHCOG00000015692	si:dkey-34d22.5	71	41.558	ENSHCOG00000003569	rab33ba	63	41.558
ENSHCOG00000015692	si:dkey-34d22.5	77	41.317	ENSHCOG00000002217	rab18b	80	41.317
ENSHCOG00000015692	si:dkey-34d22.5	99	41.589	ENSHCOG00000019224	rab14	97	41.589
ENSHCOG00000015692	si:dkey-34d22.5	75	40.491	ENSHCOG00000004404	rab41	75	40.491
ENSHCOG00000015692	si:dkey-34d22.5	97	34.597	ENSHCOG00000005652	rab11a	95	34.597
ENSHCOG00000015692	si:dkey-34d22.5	87	38.660	ENSHCOG00000004726	rab33a	82	38.660
ENSHCOG00000015692	si:dkey-34d22.5	78	44.970	ENSHCOG00000007440	rab13	91	44.970
ENSHCOG00000015692	si:dkey-34d22.5	77	34.503	ENSHCOG00000004225	-	82	34.503
ENSHCOG00000015692	si:dkey-34d22.5	83	40.331	ENSHCOG00000019468	rab1ba	88	40.331
ENSHCOG00000015692	si:dkey-34d22.5	73	43.038	ENSHCOG00000017086	RAB15	72	43.038
ENSHCOG00000015692	si:dkey-34d22.5	76	39.759	ENSHCOG00000012376	rab12	67	39.759
ENSHCOG00000015692	si:dkey-34d22.5	81	40.341	ENSHCOG00000017123	-	80	40.341
ENSHCOG00000015692	si:dkey-34d22.5	97	35.945	ENSHCOG00000000954	-	96	36.190
ENSHCOG00000015692	si:dkey-34d22.5	76	40.237	ENSHCOG00000009133	zgc:101559	70	40.237
ENSHCOG00000015692	si:dkey-34d22.5	71	34.194	ENSHCOG00000011080	kras	87	33.333
ENSHCOG00000015692	si:dkey-34d22.5	95	31.429	ENSHCOG00000016322	RAB7A	95	31.429
ENSHCOG00000015692	si:dkey-34d22.5	75	40.491	ENSHCOG00000006550	-	76	40.491
ENSHCOG00000015692	si:dkey-34d22.5	78	34.118	ENSHCOG00000002043	rras2	82	34.118
ENSHCOG00000015692	si:dkey-34d22.5	85	38.378	ENSHCOG00000014711	rab6ba	87	38.378
ENSHCOG00000015692	si:dkey-34d22.5	74	32.121	ENSHCOG00000018554	rasd4	76	32.121
ENSHCOG00000015692	si:dkey-34d22.5	66	33.562	ENSHCOG00000013919	rab23	74	32.911
ENSHCOG00000015692	si:dkey-34d22.5	81	42.045	ENSHCOG00000001137	rab1ab	87	41.436
ENSHCOG00000015692	si:dkey-34d22.5	80	35.260	ENSHCOG00000001145	rab22a	87	35.260
ENSHCOG00000015692	si:dkey-34d22.5	97	35.349	ENSHCOG00000000232	rab11al	95	35.349
ENSHCOG00000015692	si:dkey-34d22.5	95	35.437	ENSHCOG00000020527	rab34a	77	35.437
ENSHCOG00000015692	si:dkey-34d22.5	97	35.023	ENSHCOG00000002423	rab11bb	95	35.023
ENSHCOG00000015692	si:dkey-34d22.5	83	40.884	ENSHCOG00000010023	-	87	40.884
ENSHCOG00000015692	si:dkey-34d22.5	97	34.101	ENSHCOG00000000985	-	95	34.101
ENSHCOG00000015692	si:dkey-34d22.5	77	31.138	ENSHCOG00000003667	rhebl1	89	31.138
ENSHCOG00000015692	si:dkey-34d22.5	69	40.132	ENSHCOG00000012834	-	64	40.132
ENSHCOG00000015692	si:dkey-34d22.5	78	37.647	ENSHCOG00000020238	-	76	37.647
ENSHCOG00000015692	si:dkey-34d22.5	67	37.748	ENSHCOG00000010707	rab30	81	37.748
ENSHCOG00000015692	si:dkey-34d22.5	97	36.019	ENSHCOG00000006538	si:dkey-16l2.16	98	36.744

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000015692	si:dkey-34d22.5	99	75.566	ENSACIG00000016958	si:dkey-34d22.5	99	75.566	Amphilophus_citrinellus
ENSHCOG00000015692	si:dkey-34d22.5	99	79.186	ENSATEG00000010784	si:dkey-34d22.5	86	79.186	Anabas_testudineus
ENSHCOG00000015692	si:dkey-34d22.5	99	60.648	ENSCPBG00000011236	-	99	60.648	Chrysemys_picta_bellii
ENSHCOG00000015692	si:dkey-34d22.5	99	68.326	ENSCSEG00000019183	si:dkey-34d22.5	99	68.326	Cynoglossus_semilaevis
ENSHCOG00000015692	si:dkey-34d22.5	99	73.303	ENSCVAG00000017064	si:dkey-34d22.5	99	73.303	Cyprinodon_variegatus
ENSHCOG00000015692	si:dkey-34d22.5	85	49.457	ENSDARG00000100379	si:dkey-34d22.2	98	49.457	Danio_rerio
ENSHCOG00000015692	si:dkey-34d22.5	99	58.605	ENSFALG00000001373	-	99	58.605	Ficedula_albicollis
ENSHCOG00000015692	si:dkey-34d22.5	99	71.622	ENSFHEG00000012041	si:dkey-34d22.5	99	71.622	Fundulus_heteroclitus
ENSHCOG00000015692	si:dkey-34d22.5	91	62.121	ENSGALG00000000994	-	92	62.121	Gallus_gallus
ENSHCOG00000015692	si:dkey-34d22.5	99	73.303	ENSGAFG00000008183	si:dkey-34d22.5	99	73.303	Gambusia_affinis
ENSHCOG00000015692	si:dkey-34d22.5	94	59.113	ENSGAGG00000004918	-	99	59.113	Gopherus_agassizii
ENSHCOG00000015692	si:dkey-34d22.5	99	74.661	ENSKMAG00000012778	si:dkey-34d22.5	99	74.661	Kryptolebias_marmoratus
ENSHCOG00000015692	si:dkey-34d22.5	99	74.661	ENSLBEG00000002926	si:dkey-34d22.5	100	74.661	Labrus_bergylta
ENSHCOG00000015692	si:dkey-34d22.5	88	65.969	ENSLACG00000012674	si:dkey-34d22.5	90	65.969	Latimeria_chalumnae
ENSHCOG00000015692	si:dkey-34d22.5	98	68.075	ENSLOCG00000003467	si:dkey-34d22.5	98	68.075	Lepisosteus_oculatus
ENSHCOG00000015692	si:dkey-34d22.5	99	73.973	ENSMMOG00000006846	si:dkey-34d22.5	99	73.973	Mola_mola
ENSHCOG00000015692	si:dkey-34d22.5	99	69.231	ENSMALG00000013152	si:dkey-34d22.5	99	69.231	Monopterus_albus
ENSHCOG00000015692	si:dkey-34d22.5	100	73.756	ENSORLG00000014099	si:dkey-34d22.5	100	73.756	Oryzias_latipes
ENSHCOG00000015692	si:dkey-34d22.5	100	73.756	ENSORLG00020020277	si:dkey-34d22.5	100	73.756	Oryzias_latipes_hni
ENSHCOG00000015692	si:dkey-34d22.5	100	74.208	ENSORLG00015000142	si:dkey-34d22.5	100	74.208	Oryzias_latipes_hsok
ENSHCOG00000015692	si:dkey-34d22.5	93	80.100	ENSOMEG00000017958	si:dkey-34d22.5	100	76.018	Oryzias_melastigma
ENSHCOG00000015692	si:dkey-34d22.5	99	71.560	ENSPKIG00000021209	si:dkey-34d22.5	99	71.560	Paramormyrops_kingsleyae
ENSHCOG00000015692	si:dkey-34d22.5	91	64.467	ENSPSIG00000006606	-	97	64.467	Pelodiscus_sinensis
ENSHCOG00000015692	si:dkey-34d22.5	99	74.545	ENSPMGG00000001298	-	99	75.455	Periophthalmus_magnuspinnatus
ENSHCOG00000015692	si:dkey-34d22.5	91	60.914	ENSPCIG00000022399	-	88	60.914	Phascolarctos_cinereus
ENSHCOG00000015692	si:dkey-34d22.5	99	73.756	ENSPFOG00000014499	si:dkey-34d22.5	99	73.756	Poecilia_formosa
ENSHCOG00000015692	si:dkey-34d22.5	99	73.756	ENSPLAG00000007773	si:dkey-34d22.5	99	73.756	Poecilia_latipinna
ENSHCOG00000015692	si:dkey-34d22.5	99	73.756	ENSPMEG00000012932	si:dkey-34d22.5	99	73.756	Poecilia_mexicana
ENSHCOG00000015692	si:dkey-34d22.5	91	60.914	ENSSHAG00000008520	-	88	60.914	Sarcophilus_harrisii
ENSHCOG00000015692	si:dkey-34d22.5	99	68.981	ENSSFOG00015012088	rab42	97	68.981	Scleropages_formosus
ENSHCOG00000015692	si:dkey-34d22.5	99	76.471	ENSSLDG00000002646	si:dkey-34d22.5	99	76.471	Seriola_lalandi_dorsalis
ENSHCOG00000015692	si:dkey-34d22.5	100	77.027	ENSSPAG00000012955	si:dkey-34d22.5	100	77.027	Stegastes_partitus
ENSHCOG00000015692	si:dkey-34d22.5	81	52.000	ENSXETG00000020622	rab39a	84	52.000	Xenopus_tropicalis
ENSHCOG00000015692	si:dkey-34d22.5	99	73.303	ENSXCOG00000008410	si:dkey-34d22.5	99	73.303	Xiphophorus_couchianus
ENSHCOG00000015692	si:dkey-34d22.5	99	73.303	ENSXMAG00000029317	si:dkey-34d22.5	99	73.303	Xiphophorus_maculatus