EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSHCOG00000015957 (Gene tree)
Gene ID
109526156
Gene Symbol
CPSF3 (1 of many)
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Hippocampus_comes
Status
putative
Strand
Plus strand
Length
6826 bases
Position
chrKV880250.1:826569-833394
Accession
109526156
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHCOP00000025642CPSF73-100_CPF11718.82.5e-5111
ENSHCOP00000025642Beta-CaspPF10996.85.8e-3411
ENSHCOP00000025642Lactamase_BPF00753.271.3e-1811
ENSHCOP00000025642RMMBLPF07521.125e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHCOT00000020020CPSF3 (1 of many)-2012097XM_019887258ENSHCOP00000025642698 (aa)XP_019742817UPI00094E7985
Gene Model
Click here to download ENSHCOG00000015957's gene model file
Pathways
Pathway IDPathway NameSource
hcq03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000015957's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSHCOG00000015957CPSF36937.805ENSHCOG00000013135ints118137.805
ENSHCOG00000015957CPSF39985.652ENSHCOG00000007251cpsf310085.652
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHCOG00000015957CPSF39786.324ENSG00000119203CPSF3100100.000Homo_sapiens
ENSHCOG00000015957CPSF37497.674ENSAPOG00000012241CPSF39297.674Acanthochromis_polyacanthus
ENSHCOG00000015957CPSF39986.773ENSAPOG00000022087cpsf39986.773Acanthochromis_polyacanthus
ENSHCOG00000015957CPSF39786.471ENSAMEG00000008493CPSF39986.471Ailuropoda_melanoleuca
ENSHCOG00000015957CPSF39083.917ENSACIG00000009846cpsf39977.939Amphilophus_citrinellus
ENSHCOG00000015957CPSF39091.905ENSACIG00000023663CPSF39985.362Amphilophus_citrinellus
ENSHCOG00000015957CPSF39987.064ENSAOCG00000022056cpsf39791.283Amphiprion_ocellaris
ENSHCOG00000015957CPSF39994.630ENSAOCG00000010077CPSF39994.630Amphiprion_ocellaris
ENSHCOG00000015957CPSF39986.919ENSAPEG00000019526cpsf39988.280Amphiprion_percula
ENSHCOG00000015957CPSF39994.630ENSAPEG00000021167CPSF39994.630Amphiprion_percula
ENSHCOG00000015957CPSF39987.500ENSATEG00000003959cpsf39987.500Anabas_testudineus
ENSHCOG00000015957CPSF39987.663ENSATEG00000014525CPSF39987.663Anabas_testudineus
ENSHCOG00000015957CPSF39685.970ENSAPLG00000006941CPSF39885.970Anas_platyrhynchos
ENSHCOG00000015957CPSF39183.780ENSACAG00000001759CPSF39983.780Anolis_carolinensis
ENSHCOG00000015957CPSF39781.324ENSANAG00000031254CPSF39981.859Aotus_nancymaae
ENSHCOG00000015957CPSF39092.381ENSACLG00000018846CPSF39985.797Astatotilapia_calliptera
ENSHCOG00000015957CPSF39983.754ENSACLG00000014484cpsf39987.349Astatotilapia_calliptera
ENSHCOG00000015957CPSF39987.808ENSAMXG00000004786cpsf39987.808Astyanax_mexicanus
ENSHCOG00000015957CPSF39786.471ENSBTAG00000019735CPSF39986.471Bos_taurus
ENSHCOG00000015957CPSF38957.886WBGene00013460cpsf-38957.886Caenorhabditis_elegans
ENSHCOG00000015957CPSF39786.324ENSCJAG00000006276CPSF39986.324Callithrix_jacchus
ENSHCOG00000015957CPSF39786.471ENSCAFG00000003375CPSF39586.471Canis_familiaris
ENSHCOG00000015957CPSF38889.773ENSCAFG00020026799CPSF39989.773Canis_lupus_dingo
ENSHCOG00000015957CPSF39786.471ENSCHIG00000013973CPSF39986.471Capra_hircus
ENSHCOG00000015957CPSF39786.324ENSTSYG00000002967CPSF39986.324Carlito_syrichta
ENSHCOG00000015957CPSF39586.336ENSCAPG00000013851CPSF39986.336Cavia_aperea
ENSHCOG00000015957CPSF39786.324ENSCPOG00000011299CPSF39986.324Cavia_porcellus
ENSHCOG00000015957CPSF39786.324ENSCCAG00000036730CPSF39986.357Cebus_capucinus
ENSHCOG00000015957CPSF39784.559ENSCATG00000014770CPSF39992.042Cercocebus_atys
ENSHCOG00000015957CPSF39786.176ENSCLAG00000002727CPSF39986.176Chinchilla_lanigera
ENSHCOG00000015957CPSF39778.382ENSCSAG00000007125CPSF39978.382Chlorocebus_sabaeus
ENSHCOG00000015957CPSF384100.000ENSCHOG00000000180CPSF38562.214Choloepus_hoffmanni
ENSHCOG00000015957CPSF39985.652ENSCPBG00000014074CPSF39985.652Chrysemys_picta_bellii
ENSHCOG00000015957CPSF39866.764ENSCING00000007214-9866.764Ciona_intestinalis
ENSHCOG00000015957CPSF39776.583ENSCANG00000034435CPSF39976.583Colobus_angolensis_palliatus
ENSHCOG00000015957CPSF39786.029ENSCGRG00001013134Cpsf39986.029Cricetulus_griseus_chok1gshd
ENSHCOG00000015957CPSF39786.029ENSCGRG00000018319Cpsf39986.029Cricetulus_griseus_crigri
ENSHCOG00000015957CPSF39992.029ENSCSEG00000002021CPSF39992.260Cynoglossus_semilaevis
ENSHCOG00000015957CPSF39993.324ENSCVAG00000015067CPSF39993.324Cyprinodon_variegatus
ENSHCOG00000015957CPSF39987.808ENSDARG00000027649cpsf39987.808Danio_rerio
ENSHCOG00000015957CPSF39785.463ENSDNOG00000008940CPSF39585.463Dasypus_novemcinctus
ENSHCOG00000015957CPSF39387.809ENSDORG00000014263Cpsf39987.809Dipodomys_ordii
ENSHCOG00000015957CPSF39765.731FBgn0261065Cpsf739865.731Drosophila_melanogaster
ENSHCOG00000015957CPSF39376.235ENSETEG00000003893CPSF39976.235Echinops_telfairi
ENSHCOG00000015957CPSF39975.775ENSEBUG00000009018cpsf39976.338Eptatretus_burgeri
ENSHCOG00000015957CPSF39786.471ENSEASG00005003970CPSF39986.471Equus_asinus_asinus
ENSHCOG00000015957CPSF39786.471ENSECAG00000019911CPSF39691.568Equus_caballus
ENSHCOG00000015957CPSF39771.618ENSEEUG00000015422CPSF39971.618Erinaceus_europaeus
ENSHCOG00000015957CPSF39988.986ENSELUG00000013775cpsf310088.986Esox_lucius
ENSHCOG00000015957CPSF39786.471ENSFCAG00000007852CPSF39986.471Felis_catus
ENSHCOG00000015957CPSF39285.604ENSFALG00000006572CPSF39985.604Ficedula_albicollis
ENSHCOG00000015957CPSF39786.009ENSFDAG00000006317CPSF39986.009Fukomys_damarensis
ENSHCOG00000015957CPSF39985.174ENSFHEG00000014774cpsf39985.174Fundulus_heteroclitus
ENSHCOG00000015957CPSF35875.061ENSFHEG00000012186CPSF39975.061Fundulus_heteroclitus
ENSHCOG00000015957CPSF39987.373ENSGMOG00000003157cpsf39987.373Gadus_morhua
ENSHCOG00000015957CPSF39885.320ENSGALG00000016424CPSF39985.320Gallus_gallus
ENSHCOG00000015957CPSF39183.150ENSGAFG00000019449cpsf39977.649Gambusia_affinis
ENSHCOG00000015957CPSF39993.750ENSGAFG00000008016CPSF39993.750Gambusia_affinis
ENSHCOG00000015957CPSF36780.467ENSGAGG00000025583CPSF39480.467Gopherus_agassizii
ENSHCOG00000015957CPSF39784.173ENSGGOG00000001757CPSF39197.634Gorilla_gorilla
ENSHCOG00000015957CPSF35886.881ENSHBUG00000014332CPSF39986.881Haplochromis_burtoni
ENSHCOG00000015957CPSF39986.919ENSHBUG00000001188cpsf39986.919Haplochromis_burtoni
ENSHCOG00000015957CPSF39786.176ENSHGLG00000000666CPSF39986.176Heterocephalus_glaber_female
ENSHCOG00000015957CPSF39786.176ENSHGLG00100007765CPSF39986.176Heterocephalus_glaber_male
ENSHCOG00000015957CPSF39988.099ENSIPUG00000023488cpsf39988.099Ictalurus_punctatus
ENSHCOG00000015957CPSF39786.324ENSSTOG00000004476CPSF39986.324Ictidomys_tridecemlineatus
ENSHCOG00000015957CPSF39785.588ENSJJAG00000023415Cpsf39985.588Jaculus_jaculus
ENSHCOG00000015957CPSF39993.904ENSKMAG00000007317CPSF39993.904Kryptolebias_marmoratus
ENSHCOG00000015957CPSF39986.047ENSKMAG00000002806cpsf39986.047Kryptolebias_marmoratus
ENSHCOG00000015957CPSF35381.989ENSLBEG00000015018-9981.989Labrus_bergylta
ENSHCOG00000015957CPSF39494.521ENSLBEG00000013492CPSF39994.521Labrus_bergylta
ENSHCOG00000015957CPSF39980.987ENSLBEG00000020569cpsf39680.987Labrus_bergylta
ENSHCOG00000015957CPSF39979.826ENSLACG00000008308CPSF39979.826Latimeria_chalumnae
ENSHCOG00000015957CPSF39988.567ENSLOCG00000016823cpsf39988.567Lepisosteus_oculatus
ENSHCOG00000015957CPSF39785.125ENSLAFG00000009467CPSF39985.125Loxodonta_africana
ENSHCOG00000015957CPSF39786.176ENSMFAG00000001339CPSF39494.792Macaca_fascicularis
ENSHCOG00000015957CPSF39285.759ENSMMUG00000018038CPSF39294.792Macaca_mulatta
ENSHCOG00000015957CPSF38997.600ENSMNEG00000039447CPSF39997.600Macaca_nemestrina
ENSHCOG00000015957CPSF39786.324ENSMLEG00000026825CPSF39297.425Mandrillus_leucophaeus
ENSHCOG00000015957CPSF39092.076ENSMAMG00000008835CPSF39985.962Mastacembelus_armatus
ENSHCOG00000015957CPSF39986.773ENSMAMG00000003076cpsf39986.773Mastacembelus_armatus
ENSHCOG00000015957CPSF39993.904ENSMZEG00005006258CPSF39993.904Maylandia_zebra
ENSHCOG00000015957CPSF39986.919ENSMZEG00005014358cpsf39986.919Maylandia_zebra
ENSHCOG00000015957CPSF39585.736ENSMGAG00000013995CPSF39985.736Meleagris_gallopavo
ENSHCOG00000015957CPSF35475.467ENSMAUG00000000166Cpsf39975.467Mesocricetus_auratus
ENSHCOG00000015957CPSF39781.296ENSMICG00000002363CPSF39981.296Microcebus_murinus
ENSHCOG00000015957CPSF39783.235ENSMOCG00000020067Cpsf39983.235Microtus_ochrogaster
ENSHCOG00000015957CPSF37972.619ENSMMOG00000011923CPSF38478.929Mola_mola
ENSHCOG00000015957CPSF39282.764ENSMMOG00000018212CPSF39882.764Mola_mola
ENSHCOG00000015957CPSF39785.444ENSMODG00000014703CPSF39985.444Monodelphis_domestica
ENSHCOG00000015957CPSF39987.064ENSMALG00000016416cpsf39987.064Monopterus_albus
ENSHCOG00000015957CPSF39189.219ENSMALG00000011474CPSF39989.219Monopterus_albus
ENSHCOG00000015957CPSF39786.029MGP_CAROLIEiJ_G0017640Cpsf39986.029Mus_caroli
ENSHCOG00000015957CPSF39786.029ENSMUSG00000054309Cpsf39698.305Mus_musculus
ENSHCOG00000015957CPSF39785.882MGP_PahariEiJ_G0029397Cpsf39985.882Mus_pahari
ENSHCOG00000015957CPSF39786.029MGP_SPRETEiJ_G0018481Cpsf39986.029Mus_spretus
ENSHCOG00000015957CPSF39786.598ENSMPUG00000013213CPSF39986.598Mustela_putorius_furo
ENSHCOG00000015957CPSF39786.050ENSMLUG00000010636CPSF39986.050Myotis_lucifugus
ENSHCOG00000015957CPSF39786.029ENSNGAG00000019836Cpsf39986.029Nannospalax_galili
ENSHCOG00000015957CPSF39092.381ENSNBRG00000010525CPSF39985.797Neolamprologus_brichardi
ENSHCOG00000015957CPSF39986.628ENSNBRG00000004770cpsf39986.628Neolamprologus_brichardi
ENSHCOG00000015957CPSF39786.176ENSNLEG00000013359CPSF39197.634Nomascus_leucogenys
ENSHCOG00000015957CPSF39756.176ENSMEUG00000013117-9956.176Notamacropus_eugenii
ENSHCOG00000015957CPSF39777.467ENSOPRG00000008902CPSF39977.467Ochotona_princeps
ENSHCOG00000015957CPSF39786.176ENSODEG00000003129CPSF39986.176Octodon_degus
ENSHCOG00000015957CPSF39987.355ENSONIG00000018812cpsf39987.355Oreochromis_niloticus
ENSHCOG00000015957CPSF38184.192ENSOANG00000008577CPSF39984.192Ornithorhynchus_anatinus
ENSHCOG00000015957CPSF39786.176ENSOCUG00000003728CPSF39986.176Oryctolagus_cuniculus
ENSHCOG00000015957CPSF39985.320ENSORLG00000018854cpsf39985.320Oryzias_latipes
ENSHCOG00000015957CPSF39985.174ENSORLG00020013331cpsf39985.174Oryzias_latipes_hni
ENSHCOG00000015957CPSF39985.320ENSORLG00015011017cpsf39985.320Oryzias_latipes_hsok
ENSHCOG00000015957CPSF39985.465ENSOMEG00000010647cpsf39585.465Oryzias_melastigma
ENSHCOG00000015957CPSF39776.176ENSOGAG00000001680CPSF39976.176Otolemur_garnettii
ENSHCOG00000015957CPSF39786.471ENSOARG00000015073CPSF39986.471Ovis_aries
ENSHCOG00000015957CPSF39786.324ENSPPAG00000042457CPSF39197.634Pan_paniscus
ENSHCOG00000015957CPSF39786.471ENSPPRG00000016790CPSF39986.471Panthera_pardus
ENSHCOG00000015957CPSF39786.598ENSPTIG00000003920CPSF39986.598Panthera_tigris_altaica
ENSHCOG00000015957CPSF39786.324ENSPTRG00000011638CPSF39197.634Pan_troglodytes
ENSHCOG00000015957CPSF39786.176ENSPANG00000016798CPSF39494.792Papio_anubis
ENSHCOG00000015957CPSF39989.826ENSPKIG00000023646cpsf39990.062Paramormyrops_kingsleyae
ENSHCOG00000015957CPSF39784.706ENSPSIG00000016144CPSF39984.706Pelodiscus_sinensis
ENSHCOG00000015957CPSF35886.139ENSPMGG00000015311CPSF39986.139Periophthalmus_magnuspinnatus
ENSHCOG00000015957CPSF38187.302ENSPMGG00000006141-9980.255Periophthalmus_magnuspinnatus
ENSHCOG00000015957CPSF39786.324ENSPEMG00000017668Cpsf39986.324Peromyscus_maniculatus_bairdii
ENSHCOG00000015957CPSF37888.807ENSPMAG00000004841cpsf310088.807Petromyzon_marinus
ENSHCOG00000015957CPSF39586.787ENSPCIG00000009823CPSF39887.270Phascolarctos_cinereus
ENSHCOG00000015957CPSF39993.023ENSPFOG00000010418-9993.023Poecilia_formosa
ENSHCOG00000015957CPSF39985.486ENSPFOG00000015922cpsf39985.486Poecilia_formosa
ENSHCOG00000015957CPSF39985.486ENSPLAG00000000882cpsf39985.486Poecilia_latipinna
ENSHCOG00000015957CPSF35889.578ENSPLAG00000021300-9989.578Poecilia_latipinna
ENSHCOG00000015957CPSF39985.486ENSPMEG00000018309cpsf39985.486Poecilia_mexicana
ENSHCOG00000015957CPSF39183.150ENSPREG00000014875cpsf39977.649Poecilia_reticulata
ENSHCOG00000015957CPSF39986.047ENSPREG00000004482CPSF39986.047Poecilia_reticulata
ENSHCOG00000015957CPSF39782.059ENSPPYG00000012666CPSF39982.059Pongo_abelii
ENSHCOG00000015957CPSF38365.348ENSPCAG00000015042CPSF38965.348Procavia_capensis
ENSHCOG00000015957CPSF38589.964ENSPCOG00000023016CPSF39789.964Propithecus_coquereli
ENSHCOG00000015957CPSF39786.598ENSPVAG00000005324CPSF39986.598Pteropus_vampyrus
ENSHCOG00000015957CPSF39986.919ENSPNYG00000004405cpsf39986.919Pundamilia_nyererei
ENSHCOG00000015957CPSF37795.941ENSPNYG00000021047CPSF39188.040Pundamilia_nyererei
ENSHCOG00000015957CPSF39988.244ENSPNAG00000023060cpsf39988.244Pygocentrus_nattereri
ENSHCOG00000015957CPSF39786.156ENSRNOG00000052418Cpsf39986.156Rattus_norvegicus
ENSHCOG00000015957CPSF39781.471ENSRBIG00000041615CPSF39982.508Rhinopithecus_bieti
ENSHCOG00000015957CPSF39786.324ENSRROG00000033792CPSF39986.324Rhinopithecus_roxellana
ENSHCOG00000015957CPSF38343.333YLR277CYSH18543.333Saccharomyces_cerevisiae
ENSHCOG00000015957CPSF39582.985ENSSBOG00000027263CPSF39782.985Saimiri_boliviensis_boliviensis
ENSHCOG00000015957CPSF39786.618ENSSHAG00000007024CPSF39986.618Sarcophilus_harrisii
ENSHCOG00000015957CPSF39989.826ENSSFOG00015002108cpsf39989.873Scleropages_formosus
ENSHCOG00000015957CPSF39492.237ENSSMAG00000020534CPSF39792.237Scophthalmus_maximus
ENSHCOG00000015957CPSF39986.744ENSSDUG00000002828cpsf39886.744Seriola_dumerili
ENSHCOG00000015957CPSF39994.340ENSSDUG00000018498CPSF39994.340Seriola_dumerili
ENSHCOG00000015957CPSF39994.340ENSSLDG00000005234CPSF39994.340Seriola_lalandi_dorsalis
ENSHCOG00000015957CPSF39986.888ENSSLDG00000008469cpsf39491.118Seriola_lalandi_dorsalis
ENSHCOG00000015957CPSF38883.427ENSSARG00000005186CPSF39083.427Sorex_araneus
ENSHCOG00000015957CPSF39583.731ENSSPUG00000015525CPSF39783.731Sphenodon_punctatus
ENSHCOG00000015957CPSF39987.064ENSSPAG00000018579cpsf39987.064Stegastes_partitus
ENSHCOG00000015957CPSF39994.194ENSSPAG00000002906CPSF39994.194Stegastes_partitus
ENSHCOG00000015957CPSF39786.471ENSSSCG00000020799CPSF39986.471Sus_scrofa
ENSHCOG00000015957CPSF39885.652ENSTGUG00000013016CPSF39985.652Taeniopygia_guttata
ENSHCOG00000015957CPSF35878.465ENSTRUG00000013905CPSF39978.465Takifugu_rubripes
ENSHCOG00000015957CPSF39986.331ENSTRUG00000007030cpsf39986.331Takifugu_rubripes
ENSHCOG00000015957CPSF38391.713ENSTBEG00000002707CPSF38491.713Tupaia_belangeri
ENSHCOG00000015957CPSF38574.696ENSTTRG00000000861CPSF38774.696Tursiops_truncatus
ENSHCOG00000015957CPSF39785.022ENSUAMG00000007535CPSF39885.022Ursus_americanus
ENSHCOG00000015957CPSF39286.068ENSUMAG00000003676CPSF39491.577Ursus_maritimus
ENSHCOG00000015957CPSF39186.751ENSVPAG00000008041CPSF310086.751Vicugna_pacos
ENSHCOG00000015957CPSF39786.471ENSVVUG00000002194CPSF39986.471Vulpes_vulpes
ENSHCOG00000015957CPSF39984.949ENSXETG00000008263cpsf39984.949Xenopus_tropicalis
ENSHCOG00000015957CPSF39985.631ENSXCOG00000019695cpsf39985.631Xiphophorus_couchianus
ENSHCOG00000015957CPSF35388.919ENSXCOG00000000957-8788.919Xiphophorus_couchianus
ENSHCOG00000015957CPSF39985.486ENSXMAG00000009784cpsf39985.486Xiphophorus_maculatus
ENSHCOG00000015957CPSF39993.314ENSXMAG00000027291CPSF39993.314Xiphophorus_maculatus

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