EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000015987 (Gene tree)
Gene ID: 109507596
Gene Symbol: prpf18
Alias: zgc:91830
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 7070 bases
Position: chrKV880484.1:2552093-2559162
Accession: 109507596
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000025661	PRP4	PF08799.11	1.5e-13	1	1
ENSHCOP00000012900	PRP4	PF08799.11	1.6e-13	1	1
ENSHCOP00000025668	PRP4	PF08799.11	1.7e-13	1	1
ENSHCOP00000025661	Prp18	PF02840.15	3.6e-62	1	1
ENSHCOP00000012900	Prp18	PF02840.15	3.7e-62	1	1
ENSHCOP00000025668	Prp18	PF02840.15	3.8e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000020069	-	1883	XM_019857129	ENSHCOP00000012900	341 (aa)	XP_019712688	UPI00094EEB81
ENSHCOT00000020073	-	1910	XM_019857128	ENSHCOP00000025668	350 (aa)	XP_019712687	UPI00094E31F0
ENSHCOT00000027113	-	993	-	ENSHCOP00000025661	330 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000015987's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000015987's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000015987	prpf18	100	84.503	ENSG00000165630	PRPF18	100	84.503	Homo_sapiens
ENSHCOG00000015987	prpf18	100	96.481	ENSAPOG00000024177	prpf18	100	96.481	Acanthochromis_polyacanthus
ENSHCOG00000015987	prpf18	100	83.918	ENSAMEG00000013591	-	100	83.918	Ailuropoda_melanoleuca
ENSHCOG00000015987	prpf18	100	93.842	ENSACIG00000001186	prpf18	100	93.842	Amphilophus_citrinellus
ENSHCOG00000015987	prpf18	98	96.707	ENSAOCG00000006572	prpf18	94	96.199	Amphiprion_ocellaris
ENSHCOG00000015987	prpf18	100	96.774	ENSAPEG00000004564	prpf18	100	96.774	Amphiprion_percula
ENSHCOG00000015987	prpf18	100	95.894	ENSATEG00000000303	prpf18	100	95.894	Anabas_testudineus
ENSHCOG00000015987	prpf18	99	82.059	ENSAPLG00000003387	-	99	82.059	Anas_platyrhynchos
ENSHCOG00000015987	prpf18	100	84.012	ENSACAG00000000818	-	100	84.012	Anolis_carolinensis
ENSHCOG00000015987	prpf18	100	84.211	ENSANAG00000037445	-	100	84.211	Aotus_nancymaae
ENSHCOG00000015987	prpf18	100	94.135	ENSACLG00000026296	prpf18	100	94.135	Astatotilapia_calliptera
ENSHCOG00000015987	prpf18	100	89.143	ENSAMXG00000012848	prpf18	100	89.143	Astyanax_mexicanus
ENSHCOG00000015987	prpf18	100	83.626	ENSBTAG00000017244	PRPF18	100	83.626	Bos_taurus
ENSHCOG00000015987	prpf18	98	39.943	WBGene00009320	F32B6.3	97	38.905	Caenorhabditis_elegans
ENSHCOG00000015987	prpf18	100	84.211	ENSCJAG00000009432	-	100	84.211	Callithrix_jacchus
ENSHCOG00000015987	prpf18	100	83.918	ENSCAFG00000004735	-	100	83.918	Canis_familiaris
ENSHCOG00000015987	prpf18	100	83.918	ENSCAFG00020007712	-	100	83.918	Canis_lupus_dingo
ENSHCOG00000015987	prpf18	100	83.626	ENSCHIG00000000499	-	100	83.626	Capra_hircus
ENSHCOG00000015987	prpf18	100	84.211	ENSTSYG00000003517	-	100	84.211	Carlito_syrichta
ENSHCOG00000015987	prpf18	100	84.503	ENSCPOG00000021069	-	100	84.503	Cavia_porcellus
ENSHCOG00000015987	prpf18	100	84.211	ENSCCAG00000036822	-	100	84.211	Cebus_capucinus
ENSHCOG00000015987	prpf18	100	73.684	ENSCATG00000016633	-	100	73.684	Cercocebus_atys
ENSHCOG00000015987	prpf18	100	83.918	ENSCLAG00000011770	-	100	83.918	Chinchilla_lanigera
ENSHCOG00000015987	prpf18	100	82.906	ENSCSAG00000013109	-	100	82.906	Chlorocebus_sabaeus
ENSHCOG00000015987	prpf18	100	79.775	ENSCPBG00000003100	-	100	80.337	Chrysemys_picta_bellii
ENSHCOG00000015987	prpf18	99	56.176	ENSCING00000020481	-	97	56.176	Ciona_intestinalis
ENSHCOG00000015987	prpf18	99	56.686	ENSCSAVG00000010546	-	99	55.718	Ciona_savignyi
ENSHCOG00000015987	prpf18	100	84.503	ENSCANG00000034900	-	100	84.503	Colobus_angolensis_palliatus
ENSHCOG00000015987	prpf18	100	83.918	ENSCGRG00001023665	Prpf18	100	83.918	Cricetulus_griseus_chok1gshd
ENSHCOG00000015987	prpf18	100	83.918	ENSCGRG00000014690	Prpf18	100	83.918	Cricetulus_griseus_crigri
ENSHCOG00000015987	prpf18	100	92.082	ENSCSEG00000005536	prpf18	99	92.082	Cynoglossus_semilaevis
ENSHCOG00000015987	prpf18	100	92.962	ENSCVAG00000012401	prpf18	100	92.962	Cyprinodon_variegatus
ENSHCOG00000015987	prpf18	100	89.766	ENSDARG00000058306	prpf18	100	89.766	Danio_rerio
ENSHCOG00000015987	prpf18	100	83.918	ENSDNOG00000035607	-	100	83.918	Dasypus_novemcinctus
ENSHCOG00000015987	prpf18	100	83.626	ENSDORG00000000858	Prpf18	100	83.626	Dipodomys_ordii
ENSHCOG00000015987	prpf18	99	52.994	FBgn0027784	Prp18	98	52.096	Drosophila_melanogaster
ENSHCOG00000015987	prpf18	100	76.316	ENSETEG00000015060	-	100	76.316	Echinops_telfairi
ENSHCOG00000015987	prpf18	100	69.164	ENSEBUG00000016502	prpf18	99	68.208	Eptatretus_burgeri
ENSHCOG00000015987	prpf18	100	84.211	ENSEASG00005019373	-	100	84.211	Equus_asinus_asinus
ENSHCOG00000015987	prpf18	100	84.211	ENSECAG00000006997	PRPF18	100	84.211	Equus_caballus
ENSHCOG00000015987	prpf18	54	100.000	ENSEEUG00000001171	-	56	100.000	Erinaceus_europaeus
ENSHCOG00000015987	prpf18	100	88.630	ENSELUG00000022190	prpf18	100	88.630	Esox_lucius
ENSHCOG00000015987	prpf18	100	84.211	ENSFCAG00000004436	-	100	84.211	Felis_catus
ENSHCOG00000015987	prpf18	93	80.000	ENSFALG00000001912	-	97	80.308	Ficedula_albicollis
ENSHCOG00000015987	prpf18	94	86.250	ENSFDAG00000014026	-	100	86.250	Fukomys_damarensis
ENSHCOG00000015987	prpf18	99	57.971	ENSFDAG00000010713	-	97	57.971	Fukomys_damarensis
ENSHCOG00000015987	prpf18	80	95.238	ENSFHEG00000020125	prpf18	98	95.131	Fundulus_heteroclitus
ENSHCOG00000015987	prpf18	99	87.647	ENSGMOG00000012210	prpf18	99	87.647	Gadus_morhua
ENSHCOG00000015987	prpf18	100	83.041	ENSGALG00000043593	-	100	83.041	Gallus_gallus
ENSHCOG00000015987	prpf18	100	93.548	ENSGAFG00000006034	prpf18	100	93.548	Gambusia_affinis
ENSHCOG00000015987	prpf18	100	91.789	ENSGACG00000012232	prpf18	100	91.789	Gasterosteus_aculeatus
ENSHCOG00000015987	prpf18	100	83.333	ENSGAGG00000016878	-	100	83.333	Gopherus_agassizii
ENSHCOG00000015987	prpf18	92	83.544	ENSGGOG00000025188	-	96	83.544	Gorilla_gorilla
ENSHCOG00000015987	prpf18	100	94.135	ENSHBUG00000010264	prpf18	100	94.135	Haplochromis_burtoni
ENSHCOG00000015987	prpf18	100	83.918	ENSHGLG00000018534	PRPF18	100	83.918	Heterocephalus_glaber_female
ENSHCOG00000015987	prpf18	94	85.938	ENSHGLG00100012161	-	98	85.938	Heterocephalus_glaber_male
ENSHCOG00000015987	prpf18	100	82.436	ENSIPUG00000007432	prpf18	100	82.436	Ictalurus_punctatus
ENSHCOG00000015987	prpf18	100	83.918	ENSSTOG00000008735	-	100	83.918	Ictidomys_tridecemlineatus
ENSHCOG00000015987	prpf18	100	62.682	ENSJJAG00000015191	-	100	62.682	Jaculus_jaculus
ENSHCOG00000015987	prpf18	100	84.503	ENSJJAG00000024041	-	100	84.503	Jaculus_jaculus
ENSHCOG00000015987	prpf18	100	92.669	ENSKMAG00000012124	prpf18	100	92.669	Kryptolebias_marmoratus
ENSHCOG00000015987	prpf18	97	92.169	ENSLBEG00000028466	prpf18	98	92.169	Labrus_bergylta
ENSHCOG00000015987	prpf18	100	83.626	ENSLACG00000009885	prpf18	100	84.211	Latimeria_chalumnae
ENSHCOG00000015987	prpf18	100	88.304	ENSLOCG00000016736	prpf18	100	88.304	Lepisosteus_oculatus
ENSHCOG00000015987	prpf18	100	84.503	ENSLAFG00000007753	-	100	84.503	Loxodonta_africana
ENSHCOG00000015987	prpf18	100	84.503	ENSMFAG00000000540	-	100	84.503	Macaca_fascicularis
ENSHCOG00000015987	prpf18	100	84.503	ENSMMUG00000015071	PRPF18	93	92.715	Macaca_mulatta
ENSHCOG00000015987	prpf18	100	84.503	ENSMNEG00000024679	-	100	84.503	Macaca_nemestrina
ENSHCOG00000015987	prpf18	100	69.298	ENSMLEG00000031715	-	100	69.298	Mandrillus_leucophaeus
ENSHCOG00000015987	prpf18	100	95.015	ENSMAMG00000006610	prpf18	100	95.015	Mastacembelus_armatus
ENSHCOG00000015987	prpf18	100	94.135	ENSMZEG00005019392	prpf18	100	94.135	Maylandia_zebra
ENSHCOG00000015987	prpf18	100	83.041	ENSMGAG00000005023	-	100	83.041	Meleagris_gallopavo
ENSHCOG00000015987	prpf18	100	84.795	ENSMICG00000006572	-	100	84.795	Microcebus_murinus
ENSHCOG00000015987	prpf18	100	84.503	ENSMOCG00000021468	Prpf18	100	84.503	Microtus_ochrogaster
ENSHCOG00000015987	prpf18	100	93.548	ENSMMOG00000013012	prpf18	100	93.548	Mola_mola
ENSHCOG00000015987	prpf18	99	77.586	ENSMODG00000016902	-	95	77.586	Monodelphis_domestica
ENSHCOG00000015987	prpf18	100	76.608	ENSMODG00000024043	-	100	76.608	Monodelphis_domestica
ENSHCOG00000015987	prpf18	100	86.880	ENSMALG00000005486	prpf18	100	86.880	Monopterus_albus
ENSHCOG00000015987	prpf18	100	83.918	MGP_CAROLIEiJ_G0023143	Prpf18	100	95.890	Mus_caroli
ENSHCOG00000015987	prpf18	100	84.211	ENSMUSG00000039449	Prpf18	100	95.890	Mus_musculus
ENSHCOG00000015987	prpf18	100	84.211	MGP_PahariEiJ_G0019203	Prpf18	100	95.890	Mus_pahari
ENSHCOG00000015987	prpf18	100	84.503	MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	Mus_spretus
ENSHCOG00000015987	prpf18	100	83.626	ENSMPUG00000000938	-	100	83.626	Mustela_putorius_furo
ENSHCOG00000015987	prpf18	100	83.626	ENSMLUG00000009200	-	100	83.626	Myotis_lucifugus
ENSHCOG00000015987	prpf18	100	84.503	ENSNGAG00000012500	-	100	84.503	Nannospalax_galili
ENSHCOG00000015987	prpf18	70	83.478	ENSNGAG00000023550	-	83	82.759	Nannospalax_galili
ENSHCOG00000015987	prpf18	100	94.428	ENSNBRG00000001778	prpf18	100	94.428	Neolamprologus_brichardi
ENSHCOG00000015987	prpf18	100	84.503	ENSNLEG00000012186	-	100	84.503	Nomascus_leucogenys
ENSHCOG00000015987	prpf18	78	73.359	ENSMEUG00000005032	-	75	71.815	Notamacropus_eugenii
ENSHCOG00000015987	prpf18	77	64.906	ENSOPRG00000002153	-	100	64.906	Ochotona_princeps
ENSHCOG00000015987	prpf18	100	83.918	ENSODEG00000003770	-	100	83.918	Octodon_degus
ENSHCOG00000015987	prpf18	98	94.012	ENSONIG00000014854	prpf18	96	94.012	Oreochromis_niloticus
ENSHCOG00000015987	prpf18	100	83.918	ENSOANG00000015404	-	100	83.918	Ornithorhynchus_anatinus
ENSHCOG00000015987	prpf18	100	84.211	ENSOCUG00000027756	-	96	85.015	Oryctolagus_cuniculus
ENSHCOG00000015987	prpf18	100	92.571	ENSORLG00000010293	prpf18	100	92.571	Oryzias_latipes
ENSHCOG00000015987	prpf18	100	92.962	ENSORLG00020001530	prpf18	100	92.962	Oryzias_latipes_hni
ENSHCOG00000015987	prpf18	100	92.669	ENSORLG00015013705	prpf18	100	92.669	Oryzias_latipes_hsok
ENSHCOG00000015987	prpf18	100	93.255	ENSOMEG00000009167	prpf18	100	93.255	Oryzias_melastigma
ENSHCOG00000015987	prpf18	100	83.626	ENSOGAG00000007294	-	100	83.626	Otolemur_garnettii
ENSHCOG00000015987	prpf18	100	82.051	ENSOARG00000006243	-	100	82.051	Ovis_aries
ENSHCOG00000015987	prpf18	100	84.503	ENSPPAG00000041959	-	100	84.503	Pan_paniscus
ENSHCOG00000015987	prpf18	100	84.211	ENSPPRG00000000107	-	100	84.211	Panthera_pardus
ENSHCOG00000015987	prpf18	100	84.211	ENSPTIG00000021094	-	100	84.211	Panthera_tigris_altaica
ENSHCOG00000015987	prpf18	100	84.503	ENSPTRG00000002306	PRPF18	100	84.503	Pan_troglodytes
ENSHCOG00000015987	prpf18	100	84.211	ENSPANG00000023346	-	100	84.211	Papio_anubis
ENSHCOG00000015987	prpf18	100	86.895	ENSPKIG00000014128	prpf18	96	86.895	Paramormyrops_kingsleyae
ENSHCOG00000015987	prpf18	100	83.333	ENSPSIG00000016064	-	100	83.333	Pelodiscus_sinensis
ENSHCOG00000015987	prpf18	100	85.673	ENSPMGG00000016486	prpf18	100	85.673	Periophthalmus_magnuspinnatus
ENSHCOG00000015987	prpf18	100	84.211	ENSPEMG00000013704	Prpf18	100	84.211	Peromyscus_maniculatus_bairdii
ENSHCOG00000015987	prpf18	100	73.429	ENSPMAG00000000204	prpf18	100	73.429	Petromyzon_marinus
ENSHCOG00000015987	prpf18	92	82.911	ENSPCIG00000012963	-	99	82.911	Phascolarctos_cinereus
ENSHCOG00000015987	prpf18	100	92.000	ENSPFOG00000017611	prpf18	100	92.000	Poecilia_formosa
ENSHCOG00000015987	prpf18	100	92.375	ENSPLAG00000000369	prpf18	100	92.375	Poecilia_latipinna
ENSHCOG00000015987	prpf18	100	92.375	ENSPMEG00000005183	prpf18	100	92.375	Poecilia_mexicana
ENSHCOG00000015987	prpf18	100	92.669	ENSPREG00000015232	prpf18	100	92.669	Poecilia_reticulata
ENSHCOG00000015987	prpf18	100	84.211	ENSPPYG00000002101	PRPF18	100	84.211	Pongo_abelii
ENSHCOG00000015987	prpf18	100	66.374	ENSPCAG00000010833	-	100	66.374	Procavia_capensis
ENSHCOG00000015987	prpf18	100	79.825	ENSPCOG00000013057	-	100	79.825	Propithecus_coquereli
ENSHCOG00000015987	prpf18	100	50.877	ENSPVAG00000002947	-	100	50.877	Pteropus_vampyrus
ENSHCOG00000015987	prpf18	100	94.428	ENSPNYG00000003554	prpf18	100	94.428	Pundamilia_nyererei
ENSHCOG00000015987	prpf18	100	88.604	ENSPNAG00000023151	prpf18	100	88.604	Pygocentrus_nattereri
ENSHCOG00000015987	prpf18	100	83.918	ENSRNOG00000018396	Prpf18	100	83.918	Rattus_norvegicus
ENSHCOG00000015987	prpf18	100	84.795	ENSRBIG00000028028	-	100	84.795	Rhinopithecus_bieti
ENSHCOG00000015987	prpf18	100	84.503	ENSRROG00000040695	-	100	84.503	Rhinopithecus_roxellana
ENSHCOG00000015987	prpf18	100	84.211	ENSSBOG00000034482	-	100	84.211	Saimiri_boliviensis_boliviensis
ENSHCOG00000015987	prpf18	100	70.175	ENSSHAG00000009669	-	100	70.175	Sarcophilus_harrisii
ENSHCOG00000015987	prpf18	100	83.918	ENSSHAG00000016463	-	100	83.918	Sarcophilus_harrisii
ENSHCOG00000015987	prpf18	98	84.638	ENSSFOG00015022118	prpf18	100	79.827	Scleropages_formosus
ENSHCOG00000015987	prpf18	77	45.455	ENSSFOG00015021154	-	89	48.069	Scleropages_formosus
ENSHCOG00000015987	prpf18	100	92.669	ENSSMAG00000005308	prpf18	100	92.669	Scophthalmus_maximus
ENSHCOG00000015987	prpf18	100	97.654	ENSSDUG00000015428	prpf18	100	97.654	Seriola_dumerili
ENSHCOG00000015987	prpf18	100	97.361	ENSSLDG00000023989	prpf18	100	97.361	Seriola_lalandi_dorsalis
ENSHCOG00000015987	prpf18	100	55.848	ENSSARG00000005307	-	100	55.848	Sorex_araneus
ENSHCOG00000015987	prpf18	100	83.626	ENSSPUG00000002619	-	100	83.626	Sphenodon_punctatus
ENSHCOG00000015987	prpf18	100	96.774	ENSSPAG00000019502	prpf18	100	96.774	Stegastes_partitus
ENSHCOG00000015987	prpf18	100	83.918	ENSSSCG00000026354	-	100	83.918	Sus_scrofa
ENSHCOG00000015987	prpf18	100	83.041	ENSTGUG00000002286	-	100	83.041	Taeniopygia_guttata
ENSHCOG00000015987	prpf18	100	89.736	ENSTRUG00000011278	prpf18	100	89.736	Takifugu_rubripes
ENSHCOG00000015987	prpf18	100	90.909	ENSTNIG00000000911	prpf18	100	90.909	Tetraodon_nigroviridis
ENSHCOG00000015987	prpf18	79	98.718	ENSTBEG00000013011	-	79	98.718	Tupaia_belangeri
ENSHCOG00000015987	prpf18	100	84.795	ENSTTRG00000011117	PRPF18	100	84.795	Tursiops_truncatus
ENSHCOG00000015987	prpf18	91	86.817	ENSUAMG00000001815	-	93	86.817	Ursus_americanus
ENSHCOG00000015987	prpf18	100	78.947	ENSUMAG00000012329	-	100	78.947	Ursus_maritimus
ENSHCOG00000015987	prpf18	100	78.363	ENSVPAG00000011486	-	100	78.363	Vicugna_pacos
ENSHCOG00000015987	prpf18	100	83.918	ENSVVUG00000005453	-	100	83.918	Vulpes_vulpes
ENSHCOG00000015987	prpf18	100	75.942	ENSXETG00000024057	prpf18	100	75.652	Xenopus_tropicalis
ENSHCOG00000015987	prpf18	100	92.420	ENSXCOG00000020414	prpf18	100	92.420	Xiphophorus_couchianus
ENSHCOG00000015987	prpf18	100	92.962	ENSXMAG00000004713	prpf18	91	92.962	Xiphophorus_maculatus