EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000016135 (Gene tree)
Gene ID: 109529396
Gene Symbol: srsf7a
Alias: fb39b02|wu:fb39b02|zgc:77155
Full Name: serine and arginine rich splicing factor 7
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 6447 bases
Position: chrKV880365.1:427217-433663
Accession: 109529396
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000025761	RRM_1	PF00076.22	1.7e-15	1	1
ENSHCOP00000013058	RRM_1	PF00076.22	2e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000020269	-	1677	XM_019892767	ENSHCOP00000025761	244 (aa)	XP_019748326	UPI00094EE45D
ENSHCOT00000020256	-	1074	-	ENSHCOP00000013058	258 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000016135's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03040	Spliceosome	KEGG
hcq05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000016135's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000016135	srsf7a	61	50.667	ENSHCOG00000017795	-	69	54.032

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000016135	srsf7a	98	91.213	ENSAPOG00000023586	srsf7a	92	91.213	Acanthochromis_polyacanthus
ENSHCOG00000016135	srsf7a	98	90.795	ENSAOCG00000012705	srsf7a	92	90.795	Amphiprion_ocellaris
ENSHCOG00000016135	srsf7a	98	90.795	ENSAPEG00000017818	srsf7a	92	90.795	Amphiprion_percula
ENSHCOG00000016135	srsf7a	100	94.262	ENSATEG00000004691	srsf7a	100	94.262	Anabas_testudineus
ENSHCOG00000016135	srsf7a	89	62.443	ENSAMXG00000007005	srsf7b	55	74.359	Astyanax_mexicanus
ENSHCOG00000016135	srsf7a	80	70.256	ENSAMXG00000001532	srsf7a	79	64.249	Astyanax_mexicanus
ENSHCOG00000016135	srsf7a	50	56.800	ENSCAFG00020013547	-	71	58.772	Canis_lupus_dingo
ENSHCOG00000016135	srsf7a	63	50.955	ENSCSAVG00000007369	-	69	50.806	Ciona_savignyi
ENSHCOG00000016135	srsf7a	53	96.124	ENSCSEG00000006378	srsf7a	90	96.124	Cynoglossus_semilaevis
ENSHCOG00000016135	srsf7a	55	55.245	ENSCVAG00000009865	-	62	69.149	Cyprinodon_variegatus
ENSHCOG00000016135	srsf7a	94	75.949	ENSDARG00000035325	srsf7a	85	93.548	Danio_rerio
ENSHCOG00000016135	srsf7a	63	52.469	ENSEBUG00000002677	-	56	67.442	Eptatretus_burgeri
ENSHCOG00000016135	srsf7a	78	58.182	ENSELUG00000018155	srsf7b	83	74.783	Esox_lucius
ENSHCOG00000016135	srsf7a	68	64.072	ENSGALG00000033120	SRSF7	85	77.391	Gallus_gallus
ENSHCOG00000016135	srsf7a	52	67.442	ENSGAFG00000008856	srsf7b	84	70.940	Gambusia_affinis
ENSHCOG00000016135	srsf7a	57	56.738	ENSJJAG00000020230	-	71	62.609	Jaculus_jaculus
ENSHCOG00000016135	srsf7a	82	64.356	ENSLACG00000018688	srsf7a	56	87.069	Latimeria_chalumnae
ENSHCOG00000016135	srsf7a	62	67.974	ENSLOCG00000014314	-	63	87.931	Lepisosteus_oculatus
ENSHCOG00000016135	srsf7a	61	48.344	ENSMFAG00000002707	SRSF3	72	75.000	Macaca_fascicularis
ENSHCOG00000016135	srsf7a	60	62.416	ENSMAMG00000017138	srsf7b	50	74.783	Mastacembelus_armatus
ENSHCOG00000016135	srsf7a	68	64.072	ENSMGAG00000007415	SRSF7	53	77.391	Meleagris_gallopavo
ENSHCOG00000016135	srsf7a	70	46.199	ENSMAUG00000011430	-	56	58.824	Mesocricetus_auratus
ENSHCOG00000016135	srsf7a	54	70.149	ENSMOCG00000022763	-	55	66.667	Microtus_ochrogaster
ENSHCOG00000016135	srsf7a	51	95.200	ENSMMOG00000005208	srsf7a	76	97.391	Mola_mola
ENSHCOG00000016135	srsf7a	63	49.351	ENSMLUG00000010671	-	52	74.118	Myotis_lucifugus
ENSHCOG00000016135	srsf7a	67	95.732	ENSNBRG00000006601	srsf7a	75	97.391	Neolamprologus_brichardi
ENSHCOG00000016135	srsf7a	54	69.630	ENSPKIG00000017425	srsf7b	65	77.391	Paramormyrops_kingsleyae
ENSHCOG00000016135	srsf7a	61	65.333	ENSPCIG00000020694	-	84	77.391	Phascolarctos_cinereus
ENSHCOG00000016135	srsf7a	50	97.521	ENSPREG00000020685	srsf7a	95	97.521	Poecilia_reticulata
ENSHCOG00000016135	srsf7a	54	67.910	ENSPCOG00000023721	-	72	68.696	Propithecus_coquereli
ENSHCOG00000016135	srsf7a	52	85.156	ENSPNAG00000012288	srsf7a	66	65.031	Pygocentrus_nattereri
ENSHCOG00000016135	srsf7a	50	71.774	ENSSDUG00000021338	srsf7b	80	74.783	Seriola_dumerili
ENSHCOG00000016135	srsf7a	100	93.443	ENSSDUG00000003389	srsf7a	100	93.443	Seriola_dumerili
ENSHCOG00000016135	srsf7a	100	93.443	ENSSLDG00000007715	srsf7a	100	93.443	Seriola_lalandi_dorsalis
ENSHCOG00000016135	srsf7a	57	67.606	ENSSPAG00000017204	srsf7b	82	75.652	Stegastes_partitus
ENSHCOG00000016135	srsf7a	52	95.238	ENSSPAG00000022192	srsf7a	99	95.238	Stegastes_partitus
ENSHCOG00000016135	srsf7a	63	52.229	ENSVVUG00000006092	-	69	65.278	Vulpes_vulpes
ENSHCOG00000016135	srsf7a	50	96.694	ENSXCOG00000009381	srsf7a	91	97.391	Xiphophorus_couchianus