EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000016199 (Gene tree)
Gene ID: 109522743
Gene Symbol: ern1
Alias: sb:eu1005|zgc:109932
Full Name: endoplasmic reticulum to nucleus signaling 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 20660 bases
Position: chrKV880153.1:513520-534179
Accession: 109522743
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000013037	Ribonuc_2-5A	PF06479.12	1.6e-41	1	1
ENSHCOP00000013053	Ribonuc_2-5A	PF06479.12	1.6e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000020251	-	3102	-	ENSHCOP00000013037	1033 (aa)	-	-
ENSHCOT00000020274	-	5399	XM_019881516	ENSHCOP00000013053	1053 (aa)	XP_019737075	UPI00094F21E9

Gene Model

Click here to download ENSHCOG00000016199's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq04140	Autophagy - animal	KEGG
hcq04141	Protein processing in endoplasmic reticulum	KEGG
hcq04210	Apoptosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000016199's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000016199	ern1	91	51.245	ENSHCOG00000020503	ern2	99	51.399

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000016199	ern1	97	85.345	ENSAPOG00000009999	ern1	97	85.345	Acanthochromis_polyacanthus
ENSHCOG00000016199	ern1	99	84.381	ENSACIG00000021716	ern1	99	84.030	Amphilophus_citrinellus
ENSHCOG00000016199	ern1	98	85.499	ENSAOCG00000012309	ern1	98	85.499	Amphiprion_ocellaris
ENSHCOG00000016199	ern1	98	85.028	ENSAPEG00000011263	ern1	98	90.998	Amphiprion_percula
ENSHCOG00000016199	ern1	99	84.201	ENSATEG00000024468	ern1	98	84.171	Anabas_testudineus
ENSHCOG00000016199	ern1	99	84.476	ENSACLG00000027919	ern1	99	84.123	Astatotilapia_calliptera
ENSHCOG00000016199	ern1	93	81.653	ENSAMXG00000000944	ern1	95	81.653	Astyanax_mexicanus
ENSHCOG00000016199	ern1	91	89.350	ENSCSEG00000014500	ern1	99	84.834	Cynoglossus_semilaevis
ENSHCOG00000016199	ern1	93	85.451	ENSCVAG00000002988	ern1	96	84.226	Cyprinodon_variegatus
ENSHCOG00000016199	ern1	91	80.745	ENSDARG00000013997	ern1	100	80.725	Danio_rerio
ENSHCOG00000016199	ern1	91	80.143	ENSELUG00000005957	ern1	92	81.197	Esox_lucius
ENSHCOG00000016199	ern1	96	84.794	ENSFHEG00000005578	ern1	96	84.221	Fundulus_heteroclitus
ENSHCOG00000016199	ern1	90	85.486	ENSGMOG00000011232	ern1	99	85.486	Gadus_morhua
ENSHCOG00000016199	ern1	90	88.355	ENSGAFG00000020231	ern1	93	85.974	Gambusia_affinis
ENSHCOG00000016199	ern1	90	89.626	ENSGACG00000011700	ern1	97	89.626	Gasterosteus_aculeatus
ENSHCOG00000016199	ern1	99	83.947	ENSHBUG00000012581	ern1	98	83.947	Haplochromis_burtoni
ENSHCOG00000016199	ern1	94	80.714	ENSIPUG00000011083	ern1	96	80.519	Ictalurus_punctatus
ENSHCOG00000016199	ern1	99	81.871	ENSKMAG00000019499	ern1	99	81.350	Kryptolebias_marmoratus
ENSHCOG00000016199	ern1	96	82.255	ENSLBEG00000025907	ern1	94	82.255	Labrus_bergylta
ENSHCOG00000016199	ern1	99	83.520	ENSMAMG00000023439	ern1	98	84.145	Mastacembelus_armatus
ENSHCOG00000016199	ern1	99	84.476	ENSMZEG00005003221	ern1	99	84.123	Maylandia_zebra
ENSHCOG00000016199	ern1	91	88.608	ENSMMOG00000007650	ern1	97	87.526	Mola_mola
ENSHCOG00000016199	ern1	99	82.827	ENSMALG00000017775	ern1	98	82.633	Monopterus_albus
ENSHCOG00000016199	ern1	99	84.221	ENSNBRG00000002179	ern1	98	84.221	Neolamprologus_brichardi
ENSHCOG00000016199	ern1	90	90.288	ENSONIG00000017169	ern1	98	89.357	Oreochromis_niloticus
ENSHCOG00000016199	ern1	92	87.500	ENSORLG00000008940	ern1	95	83.710	Oryzias_latipes
ENSHCOG00000016199	ern1	92	87.605	ENSORLG00020018387	ern1	100	80.873	Oryzias_latipes_hni
ENSHCOG00000016199	ern1	92	87.185	ENSORLG00015007946	ern1	100	80.519	Oryzias_latipes_hsok
ENSHCOG00000016199	ern1	94	86.002	ENSOMEG00000011741	ern1	95	83.317	Oryzias_melastigma
ENSHCOG00000016199	ern1	91	81.415	ENSPKIG00000005593	ern1	97	80.789	Paramormyrops_kingsleyae
ENSHCOG00000016199	ern1	97	83.813	ENSPMGG00000020442	ern1	98	83.626	Periophthalmus_magnuspinnatus
ENSHCOG00000016199	ern1	91	87.643	ENSPFOG00000007378	ern1	90	87.643	Poecilia_formosa
ENSHCOG00000016199	ern1	91	87.643	ENSPLAG00000014780	ern1	90	87.643	Poecilia_latipinna
ENSHCOG00000016199	ern1	94	85.119	ENSPMEG00000016324	ern1	94	85.119	Poecilia_mexicana
ENSHCOG00000016199	ern1	90	88.355	ENSPREG00000006286	ern1	90	87.227	Poecilia_reticulata
ENSHCOG00000016199	ern1	99	84.476	ENSPNYG00000017929	ern1	98	87.735	Pundamilia_nyererei
ENSHCOG00000016199	ern1	98	79.003	ENSPNAG00000029447	ern1	99	79.195	Pygocentrus_nattereri
ENSHCOG00000016199	ern1	99	82.952	ENSSMAG00000015042	ern1	98	82.755	Scophthalmus_maximus
ENSHCOG00000016199	ern1	99	84.358	ENSSDUG00000009098	ern1	99	84.235	Seriola_dumerili
ENSHCOG00000016199	ern1	99	83.675	ENSSLDG00000023254	ern1	99	83.563	Seriola_lalandi_dorsalis
ENSHCOG00000016199	ern1	97	85.207	ENSSPAG00000017539	ern1	96	85.207	Stegastes_partitus
ENSHCOG00000016199	ern1	93	84.449	ENSTRUG00000001041	ern1	93	85.670	Takifugu_rubripes
ENSHCOG00000016199	ern1	90	88.532	ENSTNIG00000017990	ern1	98	88.404	Tetraodon_nigroviridis
ENSHCOG00000016199	ern1	94	84.990	ENSXCOG00000010330	ern1	98	85.051	Xiphophorus_couchianus
ENSHCOG00000016199	ern1	90	88.424	ENSXMAG00000001310	ern1	90	87.331	Xiphophorus_maculatus