EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000016414 (Gene tree)
Gene ID: 109525464
Gene Symbol: prpf8
Alias: id:ibd1257|ik:tdsubc_2a9|im:7141966|tdsubc_2a9|wu:fb37c02|wu:fb73e06|xx:tdsubc_2a9|zgc:56504
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 14849 bases
Position: chrKV880244.1:609554-624402
Accession: 109525464
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000025869	RRM_4	PF10598.9	2.6e-48	1	1
ENSHCOP00000025869	U5_2-snRNA_bdg	PF10597.9	6.3e-74	1	1
ENSHCOP00000025869	PRO8NT	PF08082.11	9.9e-87	1	1
ENSHCOP00000025869	U6-snRNA_bdg	PF10596.9	1.5e-89	1	1
ENSHCOP00000025869	PROCN	PF08083.11	4.2e-236	1	1
ENSHCOP00000025869	PRP8_domainIV	PF12134.8	3.7e-130	1	1
ENSHCOP00000025869	PROCT	PF08084.11	2.4e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000020489	-	7576	XM_019885971	ENSHCOP00000025869	2339 (aa)	XP_019741530	UPI00094F0B50

Gene Model

Click here to download ENSHCOG00000016414's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000016414's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000016414	prpf8	100	97.563	ENSG00000174231	PRPF8	100	97.563	Homo_sapiens
ENSHCOG00000016414	prpf8	100	99.102	ENSAPOG00000010079	prpf8	100	99.102	Acanthochromis_polyacanthus
ENSHCOG00000016414	prpf8	100	97.563	ENSAMEG00000007940	PRPF8	100	97.563	Ailuropoda_melanoleuca
ENSHCOG00000016414	prpf8	100	97.113	ENSACIG00000018280	prpf8	100	97.113	Amphilophus_citrinellus
ENSHCOG00000016414	prpf8	100	99.059	ENSAOCG00000010725	prpf8	100	99.059	Amphiprion_ocellaris
ENSHCOG00000016414	prpf8	100	99.059	ENSAPEG00000014397	prpf8	100	99.059	Amphiprion_percula
ENSHCOG00000016414	prpf8	100	98.333	ENSATEG00000010062	prpf8	100	98.333	Anabas_testudineus
ENSHCOG00000016414	prpf8	96	98.132	ENSAPLG00000010357	PRPF8	100	98.132	Anas_platyrhynchos
ENSHCOG00000016414	prpf8	83	96.084	ENSACAG00000014784	PRPF8	99	96.084	Anolis_carolinensis
ENSHCOG00000016414	prpf8	100	97.563	ENSANAG00000032629	PRPF8	100	97.563	Aotus_nancymaae
ENSHCOG00000016414	prpf8	100	98.468	ENSACLG00000020858	prpf8	100	98.468	Astatotilapia_calliptera
ENSHCOG00000016414	prpf8	100	98.589	ENSAMXG00000020291	prpf8	100	98.589	Astyanax_mexicanus
ENSHCOG00000016414	prpf8	100	97.563	ENSBTAG00000011488	PRPF8	100	97.563	Bos_taurus
ENSHCOG00000016414	prpf8	99	86.618	WBGene00004187	prp-8	99	87.067	Caenorhabditis_elegans
ENSHCOG00000016414	prpf8	100	97.563	ENSCJAG00000001911	PRPF8	100	97.563	Callithrix_jacchus
ENSHCOG00000016414	prpf8	100	97.563	ENSCAFG00000019221	PRPF8	100	97.563	Canis_familiaris
ENSHCOG00000016414	prpf8	96	98.081	ENSCAFG00020009943	PRPF8	100	98.081	Canis_lupus_dingo
ENSHCOG00000016414	prpf8	100	97.563	ENSCHIG00000017499	PRPF8	100	97.563	Capra_hircus
ENSHCOG00000016414	prpf8	100	97.563	ENSTSYG00000014120	PRPF8	100	97.563	Carlito_syrichta
ENSHCOG00000016414	prpf8	96	95.857	ENSCAPG00000009459	PRPF8	99	95.857	Cavia_aperea
ENSHCOG00000016414	prpf8	100	97.563	ENSCPOG00000010379	PRPF8	100	97.563	Cavia_porcellus
ENSHCOG00000016414	prpf8	100	97.563	ENSCCAG00000031983	-	100	97.563	Cebus_capucinus
ENSHCOG00000016414	prpf8	100	97.563	ENSCATG00000038595	PRPF8	100	97.563	Cercocebus_atys
ENSHCOG00000016414	prpf8	100	97.563	ENSCLAG00000004388	PRPF8	100	97.563	Chinchilla_lanigera
ENSHCOG00000016414	prpf8	100	97.563	ENSCSAG00000013929	PRPF8	100	97.563	Chlorocebus_sabaeus
ENSHCOG00000016414	prpf8	81	97.333	ENSCHOG00000008590	PRPF8	88	97.333	Choloepus_hoffmanni
ENSHCOG00000016414	prpf8	100	97.606	ENSCPBG00000020409	PRPF8	100	97.606	Chrysemys_picta_bellii
ENSHCOG00000016414	prpf8	98	92.993	ENSCSAVG00000007825	-	100	91.151	Ciona_savignyi
ENSHCOG00000016414	prpf8	100	97.563	ENSCANG00000043088	PRPF8	100	97.563	Colobus_angolensis_palliatus
ENSHCOG00000016414	prpf8	73	99.213	ENSCGRG00000005129	Prpf8	100	99.213	Cricetulus_griseus_crigri
ENSHCOG00000016414	prpf8	100	98.761	ENSCSEG00000007905	prpf8	100	98.761	Cynoglossus_semilaevis
ENSHCOG00000016414	prpf8	100	98.634	ENSDARG00000026180	prpf8	100	98.634	Danio_rerio
ENSHCOG00000016414	prpf8	93	97.748	ENSDNOG00000018471	PRPF8	99	97.748	Dasypus_novemcinctus
ENSHCOG00000016414	prpf8	84	96.320	ENSDORG00000006185	Prpf8	96	95.695	Dipodomys_ordii
ENSHCOG00000016414	prpf8	99	91.470	FBgn0033688	Prp8	97	91.731	Drosophila_melanogaster
ENSHCOG00000016414	prpf8	100	92.219	ENSETEG00000017592	PRPF8	100	92.219	Echinops_telfairi
ENSHCOG00000016414	prpf8	99	93.310	ENSEBUG00000006548	prpf8	99	93.310	Eptatretus_burgeri
ENSHCOG00000016414	prpf8	100	97.563	ENSEASG00005009514	PRPF8	100	97.563	Equus_asinus_asinus
ENSHCOG00000016414	prpf8	97	98.110	ENSECAG00000021318	PRPF8	100	98.110	Equus_caballus
ENSHCOG00000016414	prpf8	67	98.519	ENSEEUG00000012120	-	67	98.519	Erinaceus_europaeus
ENSHCOG00000016414	prpf8	98	97.597	ENSELUG00000007120	prpf8	99	97.597	Esox_lucius
ENSHCOG00000016414	prpf8	100	97.563	ENSFCAG00000006297	PRPF8	100	97.563	Felis_catus
ENSHCOG00000016414	prpf8	100	97.649	ENSFALG00000006628	PRPF8	100	97.649	Ficedula_albicollis
ENSHCOG00000016414	prpf8	100	97.563	ENSFDAG00000004711	PRPF8	100	97.563	Fukomys_damarensis
ENSHCOG00000016414	prpf8	100	98.377	ENSFHEG00000021084	prpf8	100	98.377	Fundulus_heteroclitus
ENSHCOG00000016414	prpf8	100	96.533	ENSGMOG00000002028	prpf8	99	96.533	Gadus_morhua
ENSHCOG00000016414	prpf8	100	97.649	ENSGALG00000002943	PRPF8	100	97.649	Gallus_gallus
ENSHCOG00000016414	prpf8	99	98.842	ENSGAFG00000010337	prpf8	99	98.842	Gambusia_affinis
ENSHCOG00000016414	prpf8	100	98.847	ENSGACG00000008504	prpf8	100	98.803	Gasterosteus_aculeatus
ENSHCOG00000016414	prpf8	100	97.649	ENSGAGG00000008350	PRPF8	100	97.649	Gopherus_agassizii
ENSHCOG00000016414	prpf8	100	97.563	ENSGGOG00000005516	PRPF8	100	97.563	Gorilla_gorilla
ENSHCOG00000016414	prpf8	100	98.803	ENSHBUG00000016192	prpf8	100	98.803	Haplochromis_burtoni
ENSHCOG00000016414	prpf8	100	97.563	ENSHGLG00000012029	PRPF8	100	97.563	Heterocephalus_glaber_female
ENSHCOG00000016414	prpf8	100	97.563	ENSHGLG00100016494	PRPF8	100	97.563	Heterocephalus_glaber_male
ENSHCOG00000016414	prpf8	100	98.717	ENSIPUG00000023230	prpf8	100	98.717	Ictalurus_punctatus
ENSHCOG00000016414	prpf8	100	97.563	ENSSTOG00000005128	PRPF8	100	97.563	Ictidomys_tridecemlineatus
ENSHCOG00000016414	prpf8	100	95.425	ENSJJAG00000021159	Prpf8	100	95.425	Jaculus_jaculus
ENSHCOG00000016414	prpf8	99	98.755	ENSKMAG00000016118	prpf8	99	98.755	Kryptolebias_marmoratus
ENSHCOG00000016414	prpf8	100	99.102	ENSLBEG00000026903	prpf8	100	99.102	Labrus_bergylta
ENSHCOG00000016414	prpf8	95	95.403	ENSLACG00000010479	PRPF8	99	98.164	Latimeria_chalumnae
ENSHCOG00000016414	prpf8	99	98.462	ENSLOCG00000005409	prpf8	99	98.462	Lepisosteus_oculatus
ENSHCOG00000016414	prpf8	100	97.563	ENSLAFG00000015445	PRPF8	100	97.563	Loxodonta_africana
ENSHCOG00000016414	prpf8	100	97.563	ENSMFAG00000039995	PRPF8	100	97.563	Macaca_fascicularis
ENSHCOG00000016414	prpf8	100	97.563	ENSMMUG00000004820	PRPF8	100	97.563	Macaca_mulatta
ENSHCOG00000016414	prpf8	100	97.563	ENSMNEG00000035713	PRPF8	100	97.563	Macaca_nemestrina
ENSHCOG00000016414	prpf8	100	97.563	ENSMLEG00000037937	PRPF8	100	97.563	Mandrillus_leucophaeus
ENSHCOG00000016414	prpf8	100	98.974	ENSMAMG00000008919	prpf8	100	98.974	Mastacembelus_armatus
ENSHCOG00000016414	prpf8	100	98.468	ENSMZEG00005015073	prpf8	100	98.468	Maylandia_zebra
ENSHCOG00000016414	prpf8	100	97.649	ENSMGAG00000004769	PRPF8	100	97.649	Meleagris_gallopavo
ENSHCOG00000016414	prpf8	100	97.563	ENSMICG00000010320	PRPF8	100	97.563	Microcebus_murinus
ENSHCOG00000016414	prpf8	100	97.563	ENSMOCG00000016838	Prpf8	100	97.563	Microtus_ochrogaster
ENSHCOG00000016414	prpf8	100	98.632	ENSMMOG00000011887	prpf8	100	98.632	Mola_mola
ENSHCOG00000016414	prpf8	100	97.563	ENSMODG00000010480	PRPF8	100	97.563	Monodelphis_domestica
ENSHCOG00000016414	prpf8	97	98.445	ENSMALG00000003558	prpf8	100	98.445	Monopterus_albus
ENSHCOG00000016414	prpf8	100	97.520	MGP_CAROLIEiJ_G0016740	Prpf8	100	97.520	Mus_caroli
ENSHCOG00000016414	prpf8	100	97.520	ENSMUSG00000020850	Prpf8	100	97.520	Mus_musculus
ENSHCOG00000016414	prpf8	100	97.478	MGP_PahariEiJ_G0017877	Prpf8	100	97.478	Mus_pahari
ENSHCOG00000016414	prpf8	100	97.520	MGP_SPRETEiJ_G0017583	Prpf8	100	97.520	Mus_spretus
ENSHCOG00000016414	prpf8	100	97.563	ENSMPUG00000013227	PRPF8	100	97.563	Mustela_putorius_furo
ENSHCOG00000016414	prpf8	100	97.438	ENSMLUG00000002666	PRPF8	100	97.438	Myotis_lucifugus
ENSHCOG00000016414	prpf8	100	95.810	ENSNGAG00000005305	Prpf8	100	95.810	Nannospalax_galili
ENSHCOG00000016414	prpf8	100	98.511	ENSNBRG00000013127	prpf8	100	98.511	Neolamprologus_brichardi
ENSHCOG00000016414	prpf8	97	96.756	ENSNLEG00000000897	PRPF8	98	96.756	Nomascus_leucogenys
ENSHCOG00000016414	prpf8	98	96.262	ENSMEUG00000015999	PRPF8	100	96.262	Notamacropus_eugenii
ENSHCOG00000016414	prpf8	100	95.810	ENSOPRG00000003102	PRPF8	100	95.433	Ochotona_princeps
ENSHCOG00000016414	prpf8	100	97.563	ENSODEG00000008468	PRPF8	100	97.563	Octodon_degus
ENSHCOG00000016414	prpf8	100	98.468	ENSONIG00000008153	prpf8	100	98.468	Oreochromis_niloticus
ENSHCOG00000016414	prpf8	82	99.159	ENSOANG00000004250	PRPF8	97	99.159	Ornithorhynchus_anatinus
ENSHCOG00000016414	prpf8	100	97.563	ENSOCUG00000000081	PRPF8	100	97.563	Oryctolagus_cuniculus
ENSHCOG00000016414	prpf8	100	98.428	ENSORLG00000008036	prpf8	100	98.428	Oryzias_latipes
ENSHCOG00000016414	prpf8	100	98.386	ENSORLG00020021070	prpf8	100	98.386	Oryzias_latipes_hni
ENSHCOG00000016414	prpf8	100	98.428	ENSORLG00015002340	prpf8	100	98.428	Oryzias_latipes_hsok
ENSHCOG00000016414	prpf8	100	96.984	ENSOMEG00000016866	prpf8	100	96.984	Oryzias_melastigma
ENSHCOG00000016414	prpf8	100	97.438	ENSOARG00000013312	PRPF8	100	97.438	Ovis_aries
ENSHCOG00000016414	prpf8	100	97.563	ENSPPAG00000042753	PRPF8	100	97.563	Pan_paniscus
ENSHCOG00000016414	prpf8	100	97.563	ENSPPRG00000008746	PRPF8	100	97.563	Panthera_pardus
ENSHCOG00000016414	prpf8	100	97.478	ENSPTIG00000019200	PRPF8	100	97.478	Panthera_tigris_altaica
ENSHCOG00000016414	prpf8	100	97.563	ENSPTRG00000039576	PRPF8	100	97.563	Pan_troglodytes
ENSHCOG00000016414	prpf8	98	98.089	ENSPANG00000024607	PRPF8	98	98.089	Papio_anubis
ENSHCOG00000016414	prpf8	100	98.423	ENSPKIG00000011201	prpf8	100	98.423	Paramormyrops_kingsleyae
ENSHCOG00000016414	prpf8	100	97.563	ENSPSIG00000013393	PRPF8	100	97.563	Pelodiscus_sinensis
ENSHCOG00000016414	prpf8	100	97.563	ENSPEMG00000021699	Prpf8	100	97.563	Peromyscus_maniculatus_bairdii
ENSHCOG00000016414	prpf8	96	93.808	ENSPMAG00000005438	prpf8	100	93.853	Petromyzon_marinus
ENSHCOG00000016414	prpf8	100	97.563	ENSPCIG00000022603	PRPF8	100	98.081	Phascolarctos_cinereus
ENSHCOG00000016414	prpf8	100	98.049	ENSPFOG00000007005	prpf8	100	98.049	Poecilia_formosa
ENSHCOG00000016414	prpf8	100	97.136	ENSPLAG00000020777	prpf8	100	97.136	Poecilia_latipinna
ENSHCOG00000016414	prpf8	100	98.049	ENSPMEG00000004051	prpf8	100	98.049	Poecilia_mexicana
ENSHCOG00000016414	prpf8	100	98.717	ENSPREG00000021902	prpf8	100	98.717	Poecilia_reticulata
ENSHCOG00000016414	prpf8	100	97.563	ENSPPYG00000007777	PRPF8	100	97.563	Pongo_abelii
ENSHCOG00000016414	prpf8	90	96.535	ENSPCAG00000008938	PRPF8	90	96.535	Procavia_capensis
ENSHCOG00000016414	prpf8	100	97.563	ENSPCOG00000015182	PRPF8	100	97.563	Propithecus_coquereli
ENSHCOG00000016414	prpf8	93	98.614	ENSPVAG00000002134	PRPF8	93	98.614	Pteropus_vampyrus
ENSHCOG00000016414	prpf8	100	98.803	ENSPNYG00000016356	prpf8	100	98.803	Pundamilia_nyererei
ENSHCOG00000016414	prpf8	100	98.803	ENSPNAG00000009247	prpf8	100	98.803	Pygocentrus_nattereri
ENSHCOG00000016414	prpf8	100	97.520	ENSRNOG00000003495	Prpf8	100	97.520	Rattus_norvegicus
ENSHCOG00000016414	prpf8	100	97.563	ENSRBIG00000031219	PRPF8	100	97.635	Rhinopithecus_bieti
ENSHCOG00000016414	prpf8	100	97.563	ENSRROG00000038014	PRPF8	100	97.635	Rhinopithecus_roxellana
ENSHCOG00000016414	prpf8	98	62.516	YHR165C	PRP8	95	62.559	Saccharomyces_cerevisiae
ENSHCOG00000016414	prpf8	100	97.563	ENSSBOG00000029717	PRPF8	100	97.563	Saimiri_boliviensis_boliviensis
ENSHCOG00000016414	prpf8	100	97.520	ENSSHAG00000006167	PRPF8	100	97.520	Sarcophilus_harrisii
ENSHCOG00000016414	prpf8	100	98.377	ENSSFOG00015013905	prpf8	100	98.377	Scleropages_formosus
ENSHCOG00000016414	prpf8	100	98.931	ENSSMAG00000017736	prpf8	100	98.931	Scophthalmus_maximus
ENSHCOG00000016414	prpf8	100	99.188	ENSSDUG00000003029	prpf8	100	99.188	Seriola_dumerili
ENSHCOG00000016414	prpf8	68	99.812	ENSSLDG00000017096	prpf8	100	99.812	Seriola_lalandi_dorsalis
ENSHCOG00000016414	prpf8	87	94.408	ENSSARG00000002892	PRPF8	87	94.408	Sorex_araneus
ENSHCOG00000016414	prpf8	100	97.606	ENSSPUG00000007463	PRPF8	100	97.606	Sphenodon_punctatus
ENSHCOG00000016414	prpf8	100	98.504	ENSSPAG00000015639	prpf8	100	98.504	Stegastes_partitus
ENSHCOG00000016414	prpf8	100	97.563	ENSSSCG00000017817	PRPF8	100	97.563	Sus_scrofa
ENSHCOG00000016414	prpf8	100	97.649	ENSTGUG00000005648	-	100	97.649	Taeniopygia_guttata
ENSHCOG00000016414	prpf8	52	98.778	ENSTGUG00000015597	-	95	98.778	Taeniopygia_guttata
ENSHCOG00000016414	prpf8	100	98.589	ENSTRUG00000015906	prpf8	100	98.589	Takifugu_rubripes
ENSHCOG00000016414	prpf8	95	99.522	ENSTNIG00000003460	prpf8	99	99.522	Tetraodon_nigroviridis
ENSHCOG00000016414	prpf8	93	98.979	ENSTBEG00000006431	PRPF8	93	98.979	Tupaia_belangeri
ENSHCOG00000016414	prpf8	100	97.007	ENSTTRG00000006869	PRPF8	100	97.007	Tursiops_truncatus
ENSHCOG00000016414	prpf8	54	96.437	ENSUAMG00000015644	-	96	96.437	Ursus_americanus
ENSHCOG00000016414	prpf8	100	97.307	ENSUMAG00000009385	PRPF8	100	97.307	Ursus_maritimus
ENSHCOG00000016414	prpf8	71	98.621	ENSVPAG00000006063	-	71	98.621	Vicugna_pacos
ENSHCOG00000016414	prpf8	100	97.563	ENSVVUG00000021695	PRPF8	99	97.563	Vulpes_vulpes
ENSHCOG00000016414	prpf8	100	97.393	ENSXETG00000022259	prpf8	100	97.393	Xenopus_tropicalis
ENSHCOG00000016414	prpf8	100	98.719	ENSXCOG00000012775	prpf8	100	98.719	Xiphophorus_couchianus
ENSHCOG00000016414	prpf8	100	98.762	ENSXMAG00000008505	prpf8	100	98.762	Xiphophorus_maculatus