EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000016775 (Gene tree)
Gene ID: 109519970
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 15819 bases
Position: chrKV880080.1:536750-552568
Accession: 109519970
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000026107	SF3b1	PF08920.10	2.7e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000020908	-	5060	XM_019876860	ENSHCOP00000026107	1322 (aa)	XP_019732419	UPI00094E41A6

Gene Model

Click here to download ENSHCOG00000016775's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000016775's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000016775	sf3b1	100	92.825	ENSG00000115524	SF3B1	100	92.976	Homo_sapiens
ENSHCOG00000016775	sf3b1	100	97.428	ENSAPOG00000011894	sf3b1	100	97.428	Acanthochromis_polyacanthus
ENSHCOG00000016775	sf3b1	99	92.781	ENSAMEG00000013809	SF3B1	99	92.933	Ailuropoda_melanoleuca
ENSHCOG00000016775	sf3b1	100	96.067	ENSACIG00000020910	sf3b1	97	96.067	Amphilophus_citrinellus
ENSHCOG00000016775	sf3b1	100	97.428	ENSAOCG00000004478	sf3b1	100	97.428	Amphiprion_ocellaris
ENSHCOG00000016775	sf3b1	100	97.428	ENSAPEG00000012937	sf3b1	100	97.428	Amphiprion_percula
ENSHCOG00000016775	sf3b1	100	97.277	ENSATEG00000020435	sf3b1	100	97.277	Anabas_testudineus
ENSHCOG00000016775	sf3b1	99	93.069	ENSAPLG00000003993	SF3B1	99	92.993	Anas_platyrhynchos
ENSHCOG00000016775	sf3b1	100	92.895	ENSACAG00000009612	SF3B1	100	92.819	Anolis_carolinensis
ENSHCOG00000016775	sf3b1	100	92.825	ENSANAG00000021577	SF3B1	100	94.553	Aotus_nancymaae
ENSHCOG00000016775	sf3b1	100	96.067	ENSACLG00000023470	sf3b1	100	96.067	Astatotilapia_calliptera
ENSHCOG00000016775	sf3b1	100	96.145	ENSAMXG00000002219	sf3b1	100	96.145	Astyanax_mexicanus
ENSHCOG00000016775	sf3b1	100	92.825	ENSBTAG00000008915	SF3B1	100	92.976	Bos_taurus
ENSHCOG00000016775	sf3b1	98	64.736	WBGene00011605	sftb-1	98	64.885	Caenorhabditis_elegans
ENSHCOG00000016775	sf3b1	100	92.825	ENSCJAG00000003902	SF3B1	100	92.976	Callithrix_jacchus
ENSHCOG00000016775	sf3b1	100	92.825	ENSCAFG00000010826	SF3B1	100	92.976	Canis_familiaris
ENSHCOG00000016775	sf3b1	100	92.825	ENSCAFG00020004750	SF3B1	100	92.976	Canis_lupus_dingo
ENSHCOG00000016775	sf3b1	100	92.825	ENSCHIG00000015226	SF3B1	100	92.976	Capra_hircus
ENSHCOG00000016775	sf3b1	100	92.749	ENSTSYG00000009214	SF3B1	100	92.900	Carlito_syrichta
ENSHCOG00000016775	sf3b1	99	92.652	ENSCAPG00000006547	SF3B1	99	92.803	Cavia_aperea
ENSHCOG00000016775	sf3b1	99	92.846	ENSCPOG00000009353	SF3B1	100	92.998	Cavia_porcellus
ENSHCOG00000016775	sf3b1	100	92.825	ENSCCAG00000020506	SF3B1	100	92.976	Cebus_capucinus
ENSHCOG00000016775	sf3b1	100	92.825	ENSCATG00000035735	SF3B1	100	92.976	Cercocebus_atys
ENSHCOG00000016775	sf3b1	99	92.852	ENSCLAG00000014767	SF3B1	99	93.004	Chinchilla_lanigera
ENSHCOG00000016775	sf3b1	100	92.825	ENSCSAG00000011505	SF3B1	100	92.976	Chlorocebus_sabaeus
ENSHCOG00000016775	sf3b1	75	92.474	ENSCHOG00000009860	SF3B1	76	92.474	Choloepus_hoffmanni
ENSHCOG00000016775	sf3b1	100	93.041	ENSCPBG00000021902	SF3B1	99	94.561	Chrysemys_picta_bellii
ENSHCOG00000016775	sf3b1	69	77.898	ENSCING00000002558	-	99	78.009	Ciona_intestinalis
ENSHCOG00000016775	sf3b1	99	79.940	ENSCSAVG00000002559	-	99	79.865	Ciona_savignyi
ENSHCOG00000016775	sf3b1	100	92.825	ENSCANG00000029415	SF3B1	100	92.976	Colobus_angolensis_palliatus
ENSHCOG00000016775	sf3b1	100	92.825	ENSCGRG00001016990	Sf3b1	100	92.976	Cricetulus_griseus_chok1gshd
ENSHCOG00000016775	sf3b1	100	92.825	ENSCGRG00000005301	Sf3b1	100	92.976	Cricetulus_griseus_crigri
ENSHCOG00000016775	sf3b1	100	93.495	ENSCSEG00000003860	sf3b1	100	93.495	Cynoglossus_semilaevis
ENSHCOG00000016775	sf3b1	96	97.165	ENSCVAG00000003680	sf3b1	99	97.165	Cyprinodon_variegatus
ENSHCOG00000016775	sf3b1	100	95.159	ENSDARG00000056138	sf3b1	100	95.159	Danio_rerio
ENSHCOG00000016775	sf3b1	100	92.755	ENSDNOG00000011754	SF3B1	100	92.906	Dasypus_novemcinctus
ENSHCOG00000016775	sf3b1	99	91.172	ENSDORG00000002399	Sf3b1	100	91.020	Dipodomys_ordii
ENSHCOG00000016775	sf3b1	100	75.953	FBgn0031266	Sf3b1	100	75.953	Drosophila_melanogaster
ENSHCOG00000016775	sf3b1	83	91.439	ENSETEG00000009188	SF3B1	100	91.621	Echinops_telfairi
ENSHCOG00000016775	sf3b1	99	85.432	ENSEBUG00000004325	sf3b1	100	88.003	Eptatretus_burgeri
ENSHCOG00000016775	sf3b1	100	92.825	ENSEASG00005020159	SF3B1	98	92.976	Equus_asinus_asinus
ENSHCOG00000016775	sf3b1	100	92.825	ENSECAG00000021657	SF3B1	98	92.976	Equus_caballus
ENSHCOG00000016775	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSHCOG00000016775	sf3b1	100	95.786	ENSELUG00000005977	sf3b1	98	95.786	Esox_lucius
ENSHCOG00000016775	sf3b1	100	92.825	ENSFCAG00000005038	SF3B1	100	92.976	Felis_catus
ENSHCOG00000016775	sf3b1	99	92.993	ENSFALG00000004281	SF3B1	99	92.917	Ficedula_albicollis
ENSHCOG00000016775	sf3b1	100	92.825	ENSFDAG00000017510	SF3B1	100	92.976	Fukomys_damarensis
ENSHCOG00000016775	sf3b1	100	96.293	ENSFHEG00000014333	sf3b1	100	96.293	Fundulus_heteroclitus
ENSHCOG00000016775	sf3b1	100	95.623	ENSGMOG00000006773	sf3b1	100	95.623	Gadus_morhua
ENSHCOG00000016775	sf3b1	100	93.041	ENSGALG00000008038	SF3B1	100	92.965	Gallus_gallus
ENSHCOG00000016775	sf3b1	98	97.389	ENSGAFG00000000704	sf3b1	100	97.389	Gambusia_affinis
ENSHCOG00000016775	sf3b1	100	96.979	ENSGACG00000008839	sf3b1	100	96.979	Gasterosteus_aculeatus
ENSHCOG00000016775	sf3b1	100	92.412	ENSGAGG00000017478	SF3B1	100	92.412	Gopherus_agassizii
ENSHCOG00000016775	sf3b1	99	87.747	ENSGGOG00000009264	SF3B1	99	87.900	Gorilla_gorilla
ENSHCOG00000016775	sf3b1	99	96.136	ENSHBUG00000007705	sf3b1	99	96.136	Haplochromis_burtoni
ENSHCOG00000016775	sf3b1	99	92.852	ENSHGLG00000008285	-	99	93.004	Heterocephalus_glaber_female
ENSHCOG00000016775	sf3b1	99	90.875	ENSHGLG00100005535	-	99	91.027	Heterocephalus_glaber_male
ENSHCOG00000016775	sf3b1	100	96.369	ENSIPUG00000013171	sf3b1	100	96.369	Ictalurus_punctatus
ENSHCOG00000016775	sf3b1	100	92.825	ENSSTOG00000011034	SF3B1	100	92.976	Ictidomys_tridecemlineatus
ENSHCOG00000016775	sf3b1	99	92.824	ENSJJAG00000010903	Sf3b1	99	92.977	Jaculus_jaculus
ENSHCOG00000016775	sf3b1	100	96.823	ENSKMAG00000004009	sf3b1	100	96.823	Kryptolebias_marmoratus
ENSHCOG00000016775	sf3b1	100	96.672	ENSLBEG00000022208	sf3b1	100	96.672	Labrus_bergylta
ENSHCOG00000016775	sf3b1	99	90.805	ENSLACG00000014832	SF3B1	99	90.805	Latimeria_chalumnae
ENSHCOG00000016775	sf3b1	100	94.357	ENSLOCG00000003899	sf3b1	100	94.357	Lepisosteus_oculatus
ENSHCOG00000016775	sf3b1	100	92.825	ENSLAFG00000001956	SF3B1	100	92.976	Loxodonta_africana
ENSHCOG00000016775	sf3b1	99	92.852	ENSMMUG00000022430	SF3B1	99	93.004	Macaca_mulatta
ENSHCOG00000016775	sf3b1	100	92.825	ENSMNEG00000042333	SF3B1	100	94.553	Macaca_nemestrina
ENSHCOG00000016775	sf3b1	94	88.391	ENSMLEG00000026141	SF3B1	98	88.029	Mandrillus_leucophaeus
ENSHCOG00000016775	sf3b1	100	97.352	ENSMAMG00000010241	sf3b1	100	97.352	Mastacembelus_armatus
ENSHCOG00000016775	sf3b1	100	96.067	ENSMZEG00005021254	sf3b1	100	96.067	Maylandia_zebra
ENSHCOG00000016775	sf3b1	99	92.460	ENSMGAG00000007017	SF3B1	99	92.384	Meleagris_gallopavo
ENSHCOG00000016775	sf3b1	99	88.669	ENSMAUG00000009071	Sf3b1	99	88.821	Mesocricetus_auratus
ENSHCOG00000016775	sf3b1	100	92.825	ENSMICG00000013879	SF3B1	100	92.976	Microcebus_murinus
ENSHCOG00000016775	sf3b1	99	88.669	ENSMOCG00000000455	Sf3b1	99	88.669	Microtus_ochrogaster
ENSHCOG00000016775	sf3b1	84	96.296	ENSMMOG00000000475	sf3b1	100	96.296	Mola_mola
ENSHCOG00000016775	sf3b1	100	92.296	ENSMODG00000012275	SF3B1	100	92.372	Monodelphis_domestica
ENSHCOG00000016775	sf3b1	100	97.050	ENSMALG00000017211	sf3b1	100	97.050	Monopterus_albus
ENSHCOG00000016775	sf3b1	100	92.825	MGP_CAROLIEiJ_G0014141	Sf3b1	100	92.976	Mus_caroli
ENSHCOG00000016775	sf3b1	100	92.825	ENSMUSG00000025982	Sf3b1	100	92.976	Mus_musculus
ENSHCOG00000016775	sf3b1	100	92.825	MGP_SPRETEiJ_G0014947	Sf3b1	100	92.976	Mus_spretus
ENSHCOG00000016775	sf3b1	100	92.825	ENSMPUG00000007799	SF3B1	100	92.976	Mustela_putorius_furo
ENSHCOG00000016775	sf3b1	100	91.692	ENSMLUG00000000840	SF3B1	100	91.843	Myotis_lucifugus
ENSHCOG00000016775	sf3b1	99	92.846	ENSNGAG00000021884	-	99	92.998	Nannospalax_galili
ENSHCOG00000016775	sf3b1	100	91.534	ENSNBRG00000015816	sf3b1	100	91.459	Neolamprologus_brichardi
ENSHCOG00000016775	sf3b1	100	92.825	ENSNLEG00000006861	SF3B1	100	92.976	Nomascus_leucogenys
ENSHCOG00000016775	sf3b1	69	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSHCOG00000016775	sf3b1	100	80.562	ENSOPRG00000008596	SF3B1	100	80.710	Ochotona_princeps
ENSHCOG00000016775	sf3b1	100	92.825	ENSODEG00000011153	-	100	92.976	Octodon_degus
ENSHCOG00000016775	sf3b1	100	96.067	ENSONIG00000013758	sf3b1	100	96.067	Oreochromis_niloticus
ENSHCOG00000016775	sf3b1	82	96.218	ENSOCUG00000012722	-	96	96.218	Oryctolagus_cuniculus
ENSHCOG00000016775	sf3b1	100	96.520	ENSORLG00000020219	sf3b1	100	96.520	Oryzias_latipes
ENSHCOG00000016775	sf3b1	100	96.520	ENSORLG00020001746	sf3b1	100	96.520	Oryzias_latipes_hni
ENSHCOG00000016775	sf3b1	64	94.712	ENSORLG00015001759	sf3b1	98	94.712	Oryzias_latipes_hsok
ENSHCOG00000016775	sf3b1	100	96.823	ENSOMEG00000019231	sf3b1	100	96.823	Oryzias_melastigma
ENSHCOG00000016775	sf3b1	100	92.825	ENSOARG00000015374	SF3B1	100	92.976	Ovis_aries
ENSHCOG00000016775	sf3b1	100	92.825	ENSPPAG00000035007	SF3B1	100	92.976	Pan_paniscus
ENSHCOG00000016775	sf3b1	100	92.825	ENSPPRG00000009090	SF3B1	100	92.976	Panthera_pardus
ENSHCOG00000016775	sf3b1	100	92.825	ENSPTIG00000021557	SF3B1	100	92.976	Panthera_tigris_altaica
ENSHCOG00000016775	sf3b1	99	85.508	ENSPTRG00000012771	SF3B1	99	85.660	Pan_troglodytes
ENSHCOG00000016775	sf3b1	100	92.825	ENSPANG00000013417	SF3B1	100	92.976	Papio_anubis
ENSHCOG00000016775	sf3b1	100	95.616	ENSPKIG00000000784	sf3b1	100	95.616	Paramormyrops_kingsleyae
ENSHCOG00000016775	sf3b1	99	91.997	ENSPSIG00000017222	SF3B1	98	91.921	Pelodiscus_sinensis
ENSHCOG00000016775	sf3b1	91	96.578	ENSPMGG00000004330	sf3b1	99	96.578	Periophthalmus_magnuspinnatus
ENSHCOG00000016775	sf3b1	99	92.852	ENSPEMG00000010699	Sf3b1	100	93.004	Peromyscus_maniculatus_bairdii
ENSHCOG00000016775	sf3b1	100	88.271	ENSPMAG00000001311	sf3b1	100	88.421	Petromyzon_marinus
ENSHCOG00000016775	sf3b1	100	92.296	ENSPCIG00000010642	SF3B1	100	92.372	Phascolarctos_cinereus
ENSHCOG00000016775	sf3b1	100	97.203	ENSPFOG00000000073	sf3b1	100	97.203	Poecilia_formosa
ENSHCOG00000016775	sf3b1	100	97.201	ENSPLAG00000002293	sf3b1	100	97.201	Poecilia_latipinna
ENSHCOG00000016775	sf3b1	100	97.277	ENSPMEG00000000446	sf3b1	98	97.277	Poecilia_mexicana
ENSHCOG00000016775	sf3b1	100	97.352	ENSPREG00000019652	sf3b1	100	97.352	Poecilia_reticulata
ENSHCOG00000016775	sf3b1	100	97.138	ENSPPYG00000013044	SF3B1	100	97.138	Pongo_abelii
ENSHCOG00000016775	sf3b1	100	92.674	ENSPCAG00000009292	SF3B1	100	92.825	Procavia_capensis
ENSHCOG00000016775	sf3b1	100	92.825	ENSPCOG00000024074	SF3B1	100	92.976	Propithecus_coquereli
ENSHCOG00000016775	sf3b1	100	92.825	ENSPVAG00000008302	SF3B1	100	92.976	Pteropus_vampyrus
ENSHCOG00000016775	sf3b1	100	95.991	ENSPNYG00000014939	sf3b1	100	95.991	Pundamilia_nyererei
ENSHCOG00000016775	sf3b1	100	95.692	ENSPNAG00000008288	sf3b1	100	95.767	Pygocentrus_nattereri
ENSHCOG00000016775	sf3b1	100	92.825	ENSRNOG00000013516	Sf3b1	100	92.976	Rattus_norvegicus
ENSHCOG00000016775	sf3b1	99	89.183	ENSRBIG00000026096	SF3B1	100	89.334	Rhinopithecus_bieti
ENSHCOG00000016775	sf3b1	100	92.825	ENSRROG00000031308	SF3B1	100	92.976	Rhinopithecus_roxellana
ENSHCOG00000016775	sf3b1	100	92.825	ENSSBOG00000020080	SF3B1	100	92.976	Saimiri_boliviensis_boliviensis
ENSHCOG00000016775	sf3b1	100	92.296	ENSSHAG00000017564	SF3B1	100	92.372	Sarcophilus_harrisii
ENSHCOG00000016775	sf3b1	100	95.537	ENSSFOG00015021535	sf3b1	100	95.537	Scleropages_formosus
ENSHCOG00000016775	sf3b1	99	97.803	ENSSMAG00000013977	sf3b1	99	97.803	Scophthalmus_maximus
ENSHCOG00000016775	sf3b1	100	97.428	ENSSDUG00000017422	sf3b1	100	97.428	Seriola_dumerili
ENSHCOG00000016775	sf3b1	100	97.504	ENSSLDG00000019495	sf3b1	100	97.504	Seriola_lalandi_dorsalis
ENSHCOG00000016775	sf3b1	75	99.120	ENSSARG00000007016	SF3B1	76	99.120	Sorex_araneus
ENSHCOG00000016775	sf3b1	100	92.814	ENSSPUG00000000410	SF3B1	100	92.738	Sphenodon_punctatus
ENSHCOG00000016775	sf3b1	100	97.201	ENSSPAG00000010451	sf3b1	99	97.201	Stegastes_partitus
ENSHCOG00000016775	sf3b1	89	94.553	ENSSSCG00000016075	SF3B1	100	94.553	Sus_scrofa
ENSHCOG00000016775	sf3b1	100	93.041	ENSTGUG00000010553	SF3B1	100	92.965	Taeniopygia_guttata
ENSHCOG00000016775	sf3b1	100	96.899	ENSTRUG00000015534	sf3b1	100	96.899	Takifugu_rubripes
ENSHCOG00000016775	sf3b1	84	97.107	ENSTBEG00000008714	SF3B1	93	97.107	Tupaia_belangeri
ENSHCOG00000016775	sf3b1	92	93.552	ENSTTRG00000003414	SF3B1	92	93.552	Tursiops_truncatus
ENSHCOG00000016775	sf3b1	94	82.022	ENSUAMG00000018506	SF3B1	99	98.178	Ursus_americanus
ENSHCOG00000016775	sf3b1	100	92.825	ENSUMAG00000020945	SF3B1	100	92.976	Ursus_maritimus
ENSHCOG00000016775	sf3b1	95	93.561	ENSVPAG00000005798	SF3B1	96	93.561	Vicugna_pacos
ENSHCOG00000016775	sf3b1	100	92.825	ENSVVUG00000025948	SF3B1	95	92.976	Vulpes_vulpes
ENSHCOG00000016775	sf3b1	100	91.390	ENSXETG00000013339	sf3b1	100	91.465	Xenopus_tropicalis
ENSHCOG00000016775	sf3b1	100	92.890	ENSXCOG00000018086	sf3b1	100	93.192	Xiphophorus_couchianus
ENSHCOG00000016775	sf3b1	100	97.352	ENSXMAG00000007369	sf3b1	100	97.471	Xiphophorus_maculatus