EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000016848 (Gene tree)
Gene ID: 109522091
Gene Symbol: lsg1
Alias: fb99b06|wu:fb99b06|zgc:76988
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 5183 bases
Position: chrKV880135.1:2054016-2059198
Accession: 109522091
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000013632	MMR_HSR1	PF01926.23	1.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000021021	-	1905	XM_019880376	ENSHCOP00000013632	634 (aa)	XP_019735935	-

Gene Model

Click here to download ENSHCOG00000016848's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000016848's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000016848	lsg1	52	33.838	ENSHCOG00000009877	gnl3l	58	33.838

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000016848	lsg1	99	62.760	ENSG00000041802	LSG1	89	77.215	Homo_sapiens
ENSHCOG00000016848	lsg1	100	78.019	ENSAPOG00000009694	lsg1	98	78.730	Acanthochromis_polyacanthus
ENSHCOG00000016848	lsg1	100	61.654	ENSAMEG00000009343	LSG1	98	62.654	Ailuropoda_melanoleuca
ENSHCOG00000016848	lsg1	98	78.413	ENSACIG00000012406	lsg1	97	78.469	Amphilophus_citrinellus
ENSHCOG00000016848	lsg1	100	78.825	ENSAOCG00000016066	lsg1	98	79.081	Amphiprion_ocellaris
ENSHCOG00000016848	lsg1	100	78.825	ENSAPEG00000003252	lsg1	98	79.081	Amphiprion_percula
ENSHCOG00000016848	lsg1	98	81.659	ENSATEG00000011794	lsg1	97	81.731	Anabas_testudineus
ENSHCOG00000016848	lsg1	95	60.731	ENSACAG00000004222	LSG1	100	61.270	Anolis_carolinensis
ENSHCOG00000016848	lsg1	99	63.056	ENSANAG00000021153	LSG1	97	64.352	Aotus_nancymaae
ENSHCOG00000016848	lsg1	100	79.385	ENSACLG00000000520	lsg1	98	79.495	Astatotilapia_calliptera
ENSHCOG00000016848	lsg1	100	71.736	ENSAMXG00000008271	lsg1	98	72.756	Astyanax_mexicanus
ENSHCOG00000016848	lsg1	99	63.553	ENSBTAG00000008461	LSG1	97	63.807	Bos_taurus
ENSHCOG00000016848	lsg1	76	45.082	WBGene00016907	C53H9.2	89	49.744	Caenorhabditis_elegans
ENSHCOG00000016848	lsg1	99	63.526	ENSCJAG00000013962	LSG1	97	63.707	Callithrix_jacchus
ENSHCOG00000016848	lsg1	95	63.867	ENSCAFG00000013445	LSG1	100	64.444	Canis_familiaris
ENSHCOG00000016848	lsg1	100	62.219	ENSCAFG00020002216	LSG1	99	63.376	Canis_lupus_dingo
ENSHCOG00000016848	lsg1	100	63.190	ENSCHIG00000015769	LSG1	98	64.252	Capra_hircus
ENSHCOG00000016848	lsg1	99	62.351	ENSTSYG00000001447	LSG1	97	62.215	Carlito_syrichta
ENSHCOG00000016848	lsg1	95	62.993	ENSCAPG00000009856	LSG1	99	63.158	Cavia_aperea
ENSHCOG00000016848	lsg1	99	63.268	ENSCCAG00000035744	LSG1	97	64.587	Cebus_capucinus
ENSHCOG00000016848	lsg1	99	63.040	ENSCATG00000042060	LSG1	97	63.524	Cercocebus_atys
ENSHCOG00000016848	lsg1	99	62.315	ENSCSAG00000008796	LSG1	89	64.451	Chlorocebus_sabaeus
ENSHCOG00000016848	lsg1	100	63.174	ENSCPBG00000015941	LSG1	82	63.206	Chrysemys_picta_bellii
ENSHCOG00000016848	lsg1	69	58.163	ENSCING00000007079	-	91	58.163	Ciona_intestinalis
ENSHCOG00000016848	lsg1	78	55.020	ENSCSAVG00000002514	-	92	57.674	Ciona_savignyi
ENSHCOG00000016848	lsg1	99	62.444	ENSCANG00000030709	LSG1	97	63.988	Colobus_angolensis_palliatus
ENSHCOG00000016848	lsg1	99	65.109	ENSCGRG00001019846	Lsg1	97	65.335	Cricetulus_griseus_chok1gshd
ENSHCOG00000016848	lsg1	99	63.344	ENSCGRG00000014617	Lsg1	97	63.551	Cricetulus_griseus_crigri
ENSHCOG00000016848	lsg1	98	76.682	ENSCSEG00000008522	lsg1	97	76.730	Cynoglossus_semilaevis
ENSHCOG00000016848	lsg1	97	78.080	ENSCVAG00000002484	lsg1	97	78.080	Cyprinodon_variegatus
ENSHCOG00000016848	lsg1	100	72.561	ENSDARG00000015352	lsg1	97	73.968	Danio_rerio
ENSHCOG00000016848	lsg1	99	63.126	ENSDNOG00000006224	LSG1	97	63.142	Dasypus_novemcinctus
ENSHCOG00000016848	lsg1	99	49.147	FBgn0266284	Ns3	97	48.967	Drosophila_melanogaster
ENSHCOG00000016848	lsg1	88	76.000	ENSETEG00000003888	LSG1	87	77.966	Echinops_telfairi
ENSHCOG00000016848	lsg1	88	55.556	ENSEBUG00000003119	lsg1	85	55.556	Eptatretus_burgeri
ENSHCOG00000016848	lsg1	99	62.239	ENSEASG00005000678	LSG1	97	63.158	Equus_asinus_asinus
ENSHCOG00000016848	lsg1	99	62.054	ENSECAG00000017659	LSG1	97	63.003	Equus_caballus
ENSHCOG00000016848	lsg1	87	58.120	ENSEEUG00000015217	LSG1	75	58.120	Erinaceus_europaeus
ENSHCOG00000016848	lsg1	100	71.318	ENSELUG00000023973	lsg1	98	72.152	Esox_lucius
ENSHCOG00000016848	lsg1	100	62.879	ENSFCAG00000024957	LSG1	98	62.906	Felis_catus
ENSHCOG00000016848	lsg1	99	57.375	ENSFALG00000007210	LSG1	98	58.584	Ficedula_albicollis
ENSHCOG00000016848	lsg1	99	63.158	ENSFDAG00000017373	LSG1	97	64.139	Fukomys_damarensis
ENSHCOG00000016848	lsg1	97	77.724	ENSFHEG00000003680	lsg1	97	77.724	Fundulus_heteroclitus
ENSHCOG00000016848	lsg1	98	69.889	ENSGMOG00000015834	lsg1	97	69.904	Gadus_morhua
ENSHCOG00000016848	lsg1	99	59.398	ENSGALG00000007058	LSG1	86	60.217	Gallus_gallus
ENSHCOG00000016848	lsg1	97	79.194	ENSGAFG00000015831	lsg1	97	79.355	Gambusia_affinis
ENSHCOG00000016848	lsg1	98	79.338	ENSGACG00000009323	lsg1	97	79.239	Gasterosteus_aculeatus
ENSHCOG00000016848	lsg1	99	62.853	ENSGGOG00000000520	LSG1	97	64.606	Gorilla_gorilla
ENSHCOG00000016848	lsg1	100	79.199	ENSHBUG00000005659	lsg1	98	79.305	Haplochromis_burtoni
ENSHCOG00000016848	lsg1	99	62.654	ENSHGLG00000017390	LSG1	97	62.853	Heterocephalus_glaber_female
ENSHCOG00000016848	lsg1	99	62.654	ENSHGLG00100018587	LSG1	97	62.853	Heterocephalus_glaber_male
ENSHCOG00000016848	lsg1	100	71.851	ENSIPUG00000008631	lsg1	97	73.844	Ictalurus_punctatus
ENSHCOG00000016848	lsg1	75	60.121	ENSSTOG00000010234	LSG1	92	60.161	Ictidomys_tridecemlineatus
ENSHCOG00000016848	lsg1	99	64.154	ENSJJAG00000015513	Lsg1	97	64.139	Jaculus_jaculus
ENSHCOG00000016848	lsg1	98	74.404	ENSKMAG00000009681	lsg1	97	74.281	Kryptolebias_marmoratus
ENSHCOG00000016848	lsg1	98	78.788	ENSLBEG00000024261	lsg1	97	78.686	Labrus_bergylta
ENSHCOG00000016848	lsg1	100	64.829	ENSLACG00000013399	LSG1	98	65.099	Latimeria_chalumnae
ENSHCOG00000016848	lsg1	98	70.846	ENSLOCG00000004918	lsg1	97	70.376	Lepisosteus_oculatus
ENSHCOG00000016848	lsg1	99	63.804	ENSLAFG00000012919	-	97	64.308	Loxodonta_africana
ENSHCOG00000016848	lsg1	99	62.742	ENSMFAG00000039903	LSG1	97	63.215	Macaca_fascicularis
ENSHCOG00000016848	lsg1	99	62.742	ENSMMUG00000010708	LSG1	97	64.451	Macaca_mulatta
ENSHCOG00000016848	lsg1	99	62.742	ENSMNEG00000031538	LSG1	97	63.369	Macaca_nemestrina
ENSHCOG00000016848	lsg1	99	62.742	ENSMLEG00000041184	LSG1	97	64.451	Mandrillus_leucophaeus
ENSHCOG00000016848	lsg1	100	76.672	ENSMAMG00000000470	lsg1	98	77.033	Mastacembelus_armatus
ENSHCOG00000016848	lsg1	100	79.045	ENSMZEG00005017865	lsg1	98	79.147	Maylandia_zebra
ENSHCOG00000016848	lsg1	88	60.508	ENSMGAG00000007050	LSG1	99	60.374	Meleagris_gallopavo
ENSHCOG00000016848	lsg1	91	63.699	ENSMAUG00000016976	Lsg1	90	64.488	Mesocricetus_auratus
ENSHCOG00000016848	lsg1	99	63.222	ENSMICG00000049087	LSG1	97	63.354	Microcebus_murinus
ENSHCOG00000016848	lsg1	99	63.117	ENSMOCG00000022136	Lsg1	97	64.263	Microtus_ochrogaster
ENSHCOG00000016848	lsg1	85	85.830	ENSMMOG00000008884	lsg1	97	75.000	Mola_mola
ENSHCOG00000016848	lsg1	99	55.810	ENSMODG00000019828	LSG1	98	56.192	Monodelphis_domestica
ENSHCOG00000016848	lsg1	100	64.363	MGP_CAROLIEiJ_G0020648	Lsg1	98	64.557	Mus_caroli
ENSHCOG00000016848	lsg1	100	64.407	ENSMUSG00000022538	Lsg1	98	65.197	Mus_musculus
ENSHCOG00000016848	lsg1	98	63.850	MGP_PahariEiJ_G0016352	Lsg1	97	64.319	Mus_pahari
ENSHCOG00000016848	lsg1	100	63.846	MGP_SPRETEiJ_G0021544	Lsg1	98	65.039	Mus_spretus
ENSHCOG00000016848	lsg1	100	62.462	ENSMPUG00000003734	LSG1	98	63.369	Mustela_putorius_furo
ENSHCOG00000016848	lsg1	100	62.649	ENSMLUG00000012548	LSG1	98	62.844	Myotis_lucifugus
ENSHCOG00000016848	lsg1	99	64.099	ENSNGAG00000021872	Lsg1	97	64.420	Nannospalax_galili
ENSHCOG00000016848	lsg1	99	62.003	ENSNLEG00000008293	LSG1	97	64.297	Nomascus_leucogenys
ENSHCOG00000016848	lsg1	69	71.134	ENSMEUG00000009041	-	85	71.134	Notamacropus_eugenii
ENSHCOG00000016848	lsg1	100	78.473	ENSONIG00000002635	lsg1	98	78.560	Oreochromis_niloticus
ENSHCOG00000016848	lsg1	95	65.501	ENSOANG00000012742	LSG1	99	65.501	Ornithorhynchus_anatinus
ENSHCOG00000016848	lsg1	99	63.333	ENSOCUG00000004817	LSG1	97	63.524	Oryctolagus_cuniculus
ENSHCOG00000016848	lsg1	98	76.688	ENSORLG00000007695	lsg1	97	76.737	Oryzias_latipes
ENSHCOG00000016848	lsg1	98	77.492	ENSORLG00020016286	lsg1	97	78.191	Oryzias_latipes_hni
ENSHCOG00000016848	lsg1	98	77.170	ENSORLG00015012025	lsg1	97	77.419	Oryzias_latipes_hsok
ENSHCOG00000016848	lsg1	98	74.881	ENSOMEG00000022379	lsg1	97	75.240	Oryzias_melastigma
ENSHCOG00000016848	lsg1	99	63.801	ENSOGAG00000003475	LSG1	97	63.988	Otolemur_garnettii
ENSHCOG00000016848	lsg1	100	62.634	ENSOARG00000020403	LSG1	98	63.142	Ovis_aries
ENSHCOG00000016848	lsg1	99	64.103	ENSPPAG00000029271	LSG1	97	64.142	Pan_paniscus
ENSHCOG00000016848	lsg1	100	62.219	ENSPPRG00000010281	LSG1	98	62.232	Panthera_pardus
ENSHCOG00000016848	lsg1	100	62.727	ENSPTIG00000010789	LSG1	98	62.906	Panthera_tigris_altaica
ENSHCOG00000016848	lsg1	99	63.952	ENSPTRG00000015760	LSG1	97	63.988	Pan_troglodytes
ENSHCOG00000016848	lsg1	99	62.593	ENSPANG00000018249	LSG1	97	63.060	Papio_anubis
ENSHCOG00000016848	lsg1	99	69.099	ENSPKIG00000002895	lsg1	97	69.793	Paramormyrops_kingsleyae
ENSHCOG00000016848	lsg1	96	60.093	ENSPSIG00000009821	LSG1	99	60.093	Pelodiscus_sinensis
ENSHCOG00000016848	lsg1	95	77.124	ENSPMGG00000000931	lsg1	100	77.124	Periophthalmus_magnuspinnatus
ENSHCOG00000016848	lsg1	99	63.222	ENSPEMG00000012082	-	97	63.396	Peromyscus_maniculatus_bairdii
ENSHCOG00000016848	lsg1	99	61.493	ENSPMAG00000007451	lsg1	98	61.468	Petromyzon_marinus
ENSHCOG00000016848	lsg1	98	65.426	ENSPCIG00000013890	LSG1	79	65.426	Phascolarctos_cinereus
ENSHCOG00000016848	lsg1	97	78.378	ENSPFOG00000021882	lsg1	97	78.378	Poecilia_formosa
ENSHCOG00000016848	lsg1	97	78.720	ENSPLAG00000019536	lsg1	97	79.040	Poecilia_latipinna
ENSHCOG00000016848	lsg1	97	77.338	ENSPMEG00000017281	lsg1	97	77.338	Poecilia_mexicana
ENSHCOG00000016848	lsg1	97	69.510	ENSPREG00000006048	lsg1	97	69.510	Poecilia_reticulata
ENSHCOG00000016848	lsg1	92	62.582	ENSPPYG00000014425	LSG1	97	62.584	Pongo_abelii
ENSHCOG00000016848	lsg1	83	73.333	ENSPCAG00000005511	LSG1	87	76.271	Procavia_capensis
ENSHCOG00000016848	lsg1	99	64.373	ENSPCOG00000012360	LSG1	97	64.119	Propithecus_coquereli
ENSHCOG00000016848	lsg1	100	79.385	ENSPNYG00000021994	lsg1	98	79.495	Pundamilia_nyererei
ENSHCOG00000016848	lsg1	100	73.561	ENSPNAG00000015533	lsg1	98	73.684	Pygocentrus_nattereri
ENSHCOG00000016848	lsg1	100	63.053	ENSRNOG00000001727	Lsg1	98	64.087	Rattus_norvegicus
ENSHCOG00000016848	lsg1	99	62.891	ENSRBIG00000029053	LSG1	97	64.297	Rhinopithecus_bieti
ENSHCOG00000016848	lsg1	99	62.891	ENSRROG00000037702	LSG1	97	64.297	Rhinopithecus_roxellana
ENSHCOG00000016848	lsg1	77	42.023	YGL099W	LSG1	70	42.802	Saccharomyces_cerevisiae
ENSHCOG00000016848	lsg1	99	63.056	ENSSBOG00000034938	LSG1	97	64.506	Saimiri_boliviensis_boliviensis
ENSHCOG00000016848	lsg1	77	59.888	ENSSHAG00000003487	LSG1	100	60.674	Sarcophilus_harrisii
ENSHCOG00000016848	lsg1	98	70.774	ENSSFOG00015008955	lsg1	97	70.794	Scleropages_formosus
ENSHCOG00000016848	lsg1	98	81.319	ENSSDUG00000004622	lsg1	98	81.388	Seriola_dumerili
ENSHCOG00000016848	lsg1	98	81.369	ENSSLDG00000010869	lsg1	97	81.440	Seriola_lalandi_dorsalis
ENSHCOG00000016848	lsg1	77	70.627	ENSSARG00000012981	LSG1	79	64.638	Sorex_araneus
ENSHCOG00000016848	lsg1	100	64.384	ENSSPUG00000016347	LSG1	97	64.375	Sphenodon_punctatus
ENSHCOG00000016848	lsg1	100	78.056	ENSSPAG00000005508	lsg1	98	79.260	Stegastes_partitus
ENSHCOG00000016848	lsg1	100	63.553	ENSSSCG00000011827	LSG1	98	62.888	Sus_scrofa
ENSHCOG00000016848	lsg1	88	57.680	ENSTGUG00000009068	LSG1	100	59.339	Taeniopygia_guttata
ENSHCOG00000016848	lsg1	97	73.482	ENSTRUG00000017380	lsg1	97	73.482	Takifugu_rubripes
ENSHCOG00000016848	lsg1	97	78.594	ENSTNIG00000015570	lsg1	97	78.754	Tetraodon_nigroviridis
ENSHCOG00000016848	lsg1	91	70.000	ENSTTRG00000000559	LSG1	89	70.000	Tursiops_truncatus
ENSHCOG00000016848	lsg1	100	61.654	ENSUAMG00000012454	LSG1	98	62.906	Ursus_americanus
ENSHCOG00000016848	lsg1	100	61.654	ENSUMAG00000000855	LSG1	98	62.906	Ursus_maritimus
ENSHCOG00000016848	lsg1	95	60.224	ENSVPAG00000012400	LSG1	100	60.224	Vicugna_pacos
ENSHCOG00000016848	lsg1	95	63.680	ENSVVUG00000008956	LSG1	97	63.942	Vulpes_vulpes
ENSHCOG00000016848	lsg1	100	64.634	ENSXETG00000003451	lsg1	98	65.335	Xenopus_tropicalis
ENSHCOG00000016848	lsg1	97	79.227	ENSXCOG00000003239	lsg1	97	79.227	Xiphophorus_couchianus
ENSHCOG00000016848	lsg1	97	76.480	ENSXMAG00000005536	lsg1	98	76.480	Xiphophorus_maculatus