EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000017123 (Gene tree)
Gene ID: 109511449
Gene Symbol: -
Alias: -
Full Name: ras-related protein Rab-3D-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 8972 bases
Position: chrKV880534.1:7974877-7983848
Accession: 109511449
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000013885	MMR_HSR1	PF01926.23	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000021348	-	1368	XM_019862568	ENSHCOP00000013885	215 (aa)	XP_019718127	UPI00094E33A0

Gene Model

Click here to download ENSHCOG00000017123's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000017123's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000017123	-	92	41.206	ENSHCOG00000006550	-	94	41.206
ENSHCOG00000017123	-	93	38.835	ENSHCOG00000000232	rab11al	95	38.835
ENSHCOG00000017123	-	94	39.904	ENSHCOG00000017086	RAB15	97	39.904
ENSHCOG00000017123	-	94	45.050	ENSHCOG00000001137	rab1ab	99	45.320
ENSHCOG00000017123	-	78	33.929	ENSHCOG00000013807	rheb	90	33.929
ENSHCOG00000017123	-	74	34.146	ENSHCOG00000005024	rab9b	81	34.146
ENSHCOG00000017123	-	73	33.544	ENSHCOG00000003667	rhebl1	85	33.544
ENSHCOG00000017123	-	92	35.354	ENSHCOG00000002043	rras2	93	35.354
ENSHCOG00000017123	-	68	40.940	ENSHCOG00000009133	zgc:101559	63	40.940
ENSHCOG00000017123	-	68	36.486	ENSHCOG00000003569	rab33ba	61	36.486
ENSHCOG00000017123	-	73	39.264	ENSHCOG00000004726	rab33a	71	38.554
ENSHCOG00000017123	-	75	36.994	ENSHCOG00000012834	-	73	36.994
ENSHCOG00000017123	-	93	38.537	ENSHCOG00000000985	-	94	38.537
ENSHCOG00000017123	-	93	38.537	ENSHCOG00000002423	rab11bb	94	38.537
ENSHCOG00000017123	-	73	38.650	ENSHCOG00000016322	RAB7A	78	38.650
ENSHCOG00000017123	-	74	30.864	ENSHCOG00000020527	rab34a	61	30.864
ENSHCOG00000017123	-	72	37.662	ENSHCOG00000001145	rab22a	79	37.662
ENSHCOG00000017123	-	85	40.625	ENSHCOG00000013130	rab6bb	92	40.625
ENSHCOG00000017123	-	75	33.951	ENSHCOG00000011080	kras	84	33.962
ENSHCOG00000017123	-	82	49.153	ENSHCOG00000012376	rab12	73	49.153
ENSHCOG00000017123	-	55	44.915	ENSHCOG00000010707	rab30	64	44.915
ENSHCOG00000017123	-	87	41.711	ENSHCOG00000007187	rab25b	79	41.711
ENSHCOG00000017123	-	94	34.653	ENSHCOG00000020238	-	93	34.272
ENSHCOG00000017123	-	92	39.216	ENSHCOG00000014711	rab6ba	94	39.216
ENSHCOG00000017123	-	92	34.483	ENSHCOG00000004225	-	97	34.483
ENSHCOG00000017123	-	93	38.389	ENSHCOG00000003981	RAB39B	97	38.389
ENSHCOG00000017123	-	95	44.118	ENSHCOG00000019468	rab1ba	99	44.118
ENSHCOG00000017123	-	94	39.409	ENSHCOG00000013180	-	92	39.409
ENSHCOG00000017123	-	80	40.341	ENSHCOG00000015692	si:dkey-34d22.5	81	40.341
ENSHCOG00000017123	-	67	31.613	ENSHCOG00000019709	rasl11a	63	31.613
ENSHCOG00000017123	-	52	37.168	ENSHCOG00000018456	si:ch73-116o1.2	78	31.902
ENSHCOG00000017123	-	86	42.105	ENSHCOG00000005652	rab11a	88	42.105
ENSHCOG00000017123	-	93	39.024	ENSHCOG00000000954	-	94	39.024
ENSHCOG00000017123	-	79	38.462	ENSHCOG00000004662	rab5c	75	38.462
ENSHCOG00000017123	-	94	40.099	ENSHCOG00000019224	rab14	92	40.099
ENSHCOG00000017123	-	80	44.509	ENSHCOG00000014428	rab2a	99	40.191
ENSHCOG00000017123	-	75	47.531	ENSHCOG00000002217	rab18b	79	47.531
ENSHCOG00000017123	-	74	34.146	ENSHCOG00000004086	rab9a	81	34.146
ENSHCOG00000017123	-	78	30.814	ENSHCOG00000002948	dnajc27	63	30.814
ENSHCOG00000017123	-	75	35.329	ENSHCOG00000005802	RAB9A	78	35.329
ENSHCOG00000017123	-	67	40.278	ENSHCOG00000013919	rab23	79	38.650
ENSHCOG00000017123	-	80	39.884	ENSHCOG00000013095	rab25a	82	39.884
ENSHCOG00000017123	-	75	48.765	ENSHCOG00000006538	si:dkey-16l2.16	77	48.765
ENSHCOG00000017123	-	79	52.353	ENSHCOG00000007440	rab13	93	52.353
ENSHCOG00000017123	-	81	47.429	ENSHCOG00000010023	-	99	42.647
ENSHCOG00000017123	-	93	37.441	ENSHCOG00000019732	-	97	37.441
ENSHCOG00000017123	-	73	43.949	ENSHCOG00000004404	rab41	74	43.949

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000017123	-	100	77.027	ENSACAG00000016810	RAB3D	96	77.027	Anolis_carolinensis
ENSHCOG00000017123	-	72	83.851	ENSDARG00000018107	rab3da	96	83.851	Danio_rerio
ENSHCOG00000017123	-	99	81.132	ENSKMAG00000018973	-	96	81.132	Kryptolebias_marmoratus
ENSHCOG00000017123	-	100	69.406	ENSOCUG00000025381	RAB3D	100	69.406	Oryctolagus_cuniculus
ENSHCOG00000017123	-	88	73.016	ENSORLG00000016555	rab3db	99	68.900	Oryzias_latipes
ENSHCOG00000017123	-	88	73.016	ENSORLG00020021663	rab3db	93	70.048	Oryzias_latipes_hni
ENSHCOG00000017123	-	88	72.487	ENSORLG00015014594	rab3db	93	69.565	Oryzias_latipes_hsok
ENSHCOG00000017123	-	97	79.808	ENSPKIG00000009021	rab3db	94	79.808	Paramormyrops_kingsleyae
ENSHCOG00000017123	-	100	73.516	ENSPCIG00000017722	RAB3D	100	73.516	Phascolarctos_cinereus
ENSHCOG00000017123	-	100	73.516	ENSSHAG00000007153	RAB3D	96	73.516	Sarcophilus_harrisii