EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000017135 (Gene tree)
Gene ID: 109514244
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 8051 bases
Position: chrKV879872.1:506533-514583
Accession: 109514244
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000013898	RRM_1	PF00076.22	1.2e-14	1	2
ENSHCOP00000013898	RRM_1	PF00076.22	1.2e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000027476	-	2507	XM_019867170	ENSHCOP00000013898	504 (aa)	XP_019722729	UPI00094F25D6

Gene Model

Click here to download ENSHCOG00000017135's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000017135's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000017135	rnpc3	97	54.930	ENSG00000185946	RNPC3	95	54.930	Homo_sapiens
ENSHCOG00000017135	rnpc3	100	76.786	ENSAPOG00000017371	rnpc3	99	76.786	Acanthochromis_polyacanthus
ENSHCOG00000017135	rnpc3	97	54.509	ENSAMEG00000001694	RNPC3	95	54.509	Ailuropoda_melanoleuca
ENSHCOG00000017135	rnpc3	99	71.961	ENSACIG00000021043	rnpc3	99	72.157	Amphilophus_citrinellus
ENSHCOG00000017135	rnpc3	100	76.817	ENSAOCG00000014052	rnpc3	98	76.817	Amphiprion_ocellaris
ENSHCOG00000017135	rnpc3	100	76.817	ENSAPEG00000008739	rnpc3	98	76.817	Amphiprion_percula
ENSHCOG00000017135	rnpc3	100	74.369	ENSATEG00000021263	rnpc3	99	74.369	Anabas_testudineus
ENSHCOG00000017135	rnpc3	89	53.728	ENSAPLG00000015605	RNPC3	99	55.044	Anas_platyrhynchos
ENSHCOG00000017135	rnpc3	96	54.227	ENSACAG00000002029	RNPC3	96	52.834	Anolis_carolinensis
ENSHCOG00000017135	rnpc3	97	54.491	ENSANAG00000019950	RNPC3	95	54.491	Aotus_nancymaae
ENSHCOG00000017135	rnpc3	99	74.751	ENSACLG00000014702	rnpc3	99	74.751	Astatotilapia_calliptera
ENSHCOG00000017135	rnpc3	98	65.996	ENSAMXG00000033372	rnpc3	97	65.996	Astyanax_mexicanus
ENSHCOG00000017135	rnpc3	97	54.016	ENSBTAG00000019091	RNPC3	95	53.600	Bos_taurus
ENSHCOG00000017135	rnpc3	97	55.090	ENSCJAG00000035686	RNPC3	95	55.289	Callithrix_jacchus
ENSHCOG00000017135	rnpc3	97	54.016	ENSCAFG00000019972	RNPC3	95	54.016	Canis_familiaris
ENSHCOG00000017135	rnpc3	97	54.016	ENSCAFG00020011300	RNPC3	95	54.016	Canis_lupus_dingo
ENSHCOG00000017135	rnpc3	97	53.908	ENSCHIG00000020361	RNPC3	95	53.213	Capra_hircus
ENSHCOG00000017135	rnpc3	97	55.422	ENSTSYG00000030256	RNPC3	95	55.422	Carlito_syrichta
ENSHCOG00000017135	rnpc3	86	46.292	ENSCAPG00000013600	RNPC3	97	46.469	Cavia_aperea
ENSHCOG00000017135	rnpc3	97	54.076	ENSCPOG00000031638	RNPC3	95	54.076	Cavia_porcellus
ENSHCOG00000017135	rnpc3	97	54.871	ENSCCAG00000024301	RNPC3	95	54.871	Cebus_capucinus
ENSHCOG00000017135	rnpc3	97	43.145	ENSCATG00000035930	-	53	51.639	Cercocebus_atys
ENSHCOG00000017135	rnpc3	97	54.839	ENSCATG00000002086	RNPC3	95	54.839	Cercocebus_atys
ENSHCOG00000017135	rnpc3	97	49.904	ENSCLAG00000005169	RNPC3	95	51.786	Chinchilla_lanigera
ENSHCOG00000017135	rnpc3	97	54.839	ENSCSAG00000001519	RNPC3	95	54.839	Chlorocebus_sabaeus
ENSHCOG00000017135	rnpc3	98	54.309	ENSCPBG00000028311	RNPC3	96	55.711	Chrysemys_picta_bellii
ENSHCOG00000017135	rnpc3	95	37.959	ENSCSAVG00000002800	-	76	56.154	Ciona_savignyi
ENSHCOG00000017135	rnpc3	97	54.435	ENSCANG00000031444	RNPC3	95	54.435	Colobus_angolensis_palliatus
ENSHCOG00000017135	rnpc3	97	54.545	ENSCGRG00001019276	Rnpc3	95	54.141	Cricetulus_griseus_chok1gshd
ENSHCOG00000017135	rnpc3	89	52.516	ENSCGRG00000000053	Rnpc3	100	51.747	Cricetulus_griseus_crigri
ENSHCOG00000017135	rnpc3	99	71.315	ENSCSEG00000013475	rnpc3	97	71.919	Cynoglossus_semilaevis
ENSHCOG00000017135	rnpc3	100	73.684	ENSCVAG00000002645	rnpc3	99	73.684	Cyprinodon_variegatus
ENSHCOG00000017135	rnpc3	98	64.271	ENSDARG00000011247	rnpc3	94	67.978	Danio_rerio
ENSHCOG00000017135	rnpc3	97	53.213	ENSDNOG00000044555	-	95	53.213	Dasypus_novemcinctus
ENSHCOG00000017135	rnpc3	97	53.614	ENSDNOG00000047498	-	95	53.614	Dasypus_novemcinctus
ENSHCOG00000017135	rnpc3	97	53.521	ENSDORG00000027343	Rnpc3	95	53.521	Dipodomys_ordii
ENSHCOG00000017135	rnpc3	97	50.891	ENSEBUG00000002068	rnpc3	97	50.397	Eptatretus_burgeri
ENSHCOG00000017135	rnpc3	97	55.242	ENSEASG00005015957	RNPC3	95	55.467	Equus_asinus_asinus
ENSHCOG00000017135	rnpc3	97	55.422	ENSECAG00000021148	RNPC3	95	55.644	Equus_caballus
ENSHCOG00000017135	rnpc3	97	66.860	ENSELUG00000002264	rnpc3	97	66.019	Esox_lucius
ENSHCOG00000017135	rnpc3	97	54.527	ENSFCAG00000024312	RNPC3	95	54.527	Felis_catus
ENSHCOG00000017135	rnpc3	89	54.825	ENSFALG00000002580	RNPC3	99	56.132	Ficedula_albicollis
ENSHCOG00000017135	rnpc3	97	54.125	ENSFDAG00000019948	RNPC3	95	54.125	Fukomys_damarensis
ENSHCOG00000017135	rnpc3	100	70.312	ENSFHEG00000020647	rnpc3	99	70.392	Fundulus_heteroclitus
ENSHCOG00000017135	rnpc3	99	64.892	ENSGMOG00000019213	rnpc3	99	63.834	Gadus_morhua
ENSHCOG00000017135	rnpc3	97	55.444	ENSGALG00000005162	RNPC3	89	55.444	Gallus_gallus
ENSHCOG00000017135	rnpc3	100	73.281	ENSGAFG00000017236	rnpc3	99	73.281	Gambusia_affinis
ENSHCOG00000017135	rnpc3	99	73.757	ENSGACG00000002048	rnpc3	99	73.294	Gasterosteus_aculeatus
ENSHCOG00000017135	rnpc3	97	55.556	ENSGAGG00000008438	RNPC3	94	56.566	Gopherus_agassizii
ENSHCOG00000017135	rnpc3	97	47.677	ENSGGOG00000026201	-	95	47.475	Gorilla_gorilla
ENSHCOG00000017135	rnpc3	82	71.662	ENSHBUG00000015966	rnpc3	85	73.569	Haplochromis_burtoni
ENSHCOG00000017135	rnpc3	97	54.473	ENSHGLG00000001708	RNPC3	95	54.473	Heterocephalus_glaber_female
ENSHCOG00000017135	rnpc3	97	54.473	ENSHGLG00100003005	RNPC3	95	54.473	Heterocephalus_glaber_male
ENSHCOG00000017135	rnpc3	99	63.944	ENSIPUG00000002916	rnpc3	97	64.516	Ictalurus_punctatus
ENSHCOG00000017135	rnpc3	97	53.800	ENSSTOG00000025020	RNPC3	95	53.800	Ictidomys_tridecemlineatus
ENSHCOG00000017135	rnpc3	97	54.065	ENSJJAG00000010203	Rnpc3	96	54.049	Jaculus_jaculus
ENSHCOG00000017135	rnpc3	99	74.751	ENSKMAG00000017358	rnpc3	99	74.111	Kryptolebias_marmoratus
ENSHCOG00000017135	rnpc3	100	75.296	ENSLBEG00000024901	rnpc3	98	75.296	Labrus_bergylta
ENSHCOG00000017135	rnpc3	97	59.312	ENSLACG00000005720	RNPC3	90	57.287	Latimeria_chalumnae
ENSHCOG00000017135	rnpc3	97	63.158	ENSLOCG00000007986	rnpc3	97	60.729	Lepisosteus_oculatus
ENSHCOG00000017135	rnpc3	97	54.257	ENSLAFG00000032342	RNPC3	95	54.980	Loxodonta_africana
ENSHCOG00000017135	rnpc3	97	42.485	ENSMFAG00000002917	-	95	42.285	Macaca_fascicularis
ENSHCOG00000017135	rnpc3	97	54.839	ENSMFAG00000002004	RNPC3	95	54.839	Macaca_fascicularis
ENSHCOG00000017135	rnpc3	80	53.211	ENSMMUG00000002098	-	85	53.211	Macaca_mulatta
ENSHCOG00000017135	rnpc3	97	54.637	ENSMMUG00000018039	RNPC3	95	54.637	Macaca_mulatta
ENSHCOG00000017135	rnpc3	97	51.613	ENSMNEG00000033950	RNPC3	95	51.613	Macaca_nemestrina
ENSHCOG00000017135	rnpc3	97	40.121	ENSMNEG00000029209	-	95	42.540	Macaca_nemestrina
ENSHCOG00000017135	rnpc3	97	54.839	ENSMLEG00000033628	RNPC3	95	54.839	Mandrillus_leucophaeus
ENSHCOG00000017135	rnpc3	97	40.954	ENSMLEG00000034644	-	96	42.717	Mandrillus_leucophaeus
ENSHCOG00000017135	rnpc3	99	68.288	ENSMAMG00000007496	rnpc3	99	68.288	Mastacembelus_armatus
ENSHCOG00000017135	rnpc3	99	73.294	ENSMZEG00005020233	rnpc3	99	73.294	Maylandia_zebra
ENSHCOG00000017135	rnpc3	89	55.724	ENSMGAG00000006381	RNPC3	99	55.142	Meleagris_gallopavo
ENSHCOG00000017135	rnpc3	97	54.234	ENSMAUG00000001358	Rnpc3	95	53.939	Mesocricetus_auratus
ENSHCOG00000017135	rnpc3	97	54.728	ENSMICG00000029591	RNPC3	95	54.747	Microcebus_murinus
ENSHCOG00000017135	rnpc3	97	54.382	ENSMOCG00000013423	Rnpc3	95	53.877	Microtus_ochrogaster
ENSHCOG00000017135	rnpc3	100	69.901	ENSMMOG00000005309	rnpc3	99	71.287	Mola_mola
ENSHCOG00000017135	rnpc3	98	54.108	ENSMODG00000002946	RNPC3	96	54.108	Monodelphis_domestica
ENSHCOG00000017135	rnpc3	97	71.429	ENSMALG00000015471	rnpc3	98	71.429	Monopterus_albus
ENSHCOG00000017135	rnpc3	97	55.332	MGP_CAROLIEiJ_G0025555	Rnpc3	97	55.040	Mus_caroli
ENSHCOG00000017135	rnpc3	97	55.311	ENSMUSG00000027981	Rnpc3	99	53.404	Mus_musculus
ENSHCOG00000017135	rnpc3	97	54.980	MGP_PahariEiJ_G0027001	Rnpc3	97	54.691	Mus_pahari
ENSHCOG00000017135	rnpc3	97	54.819	MGP_SPRETEiJ_G0026505	Rnpc3	97	54.819	Mus_spretus
ENSHCOG00000017135	rnpc3	97	54.326	ENSMPUG00000007349	RNPC3	95	54.326	Mustela_putorius_furo
ENSHCOG00000017135	rnpc3	97	54.343	ENSMLUG00000028743	RNPC3	95	54.158	Myotis_lucifugus
ENSHCOG00000017135	rnpc3	97	53.521	ENSNGAG00000010939	Rnpc3	96	53.614	Nannospalax_galili
ENSHCOG00000017135	rnpc3	99	75.149	ENSNBRG00000012196	rnpc3	96	75.149	Neolamprologus_brichardi
ENSHCOG00000017135	rnpc3	97	54.343	ENSNLEG00000012013	RNPC3	95	54.343	Nomascus_leucogenys
ENSHCOG00000017135	rnpc3	97	54.839	ENSODEG00000007612	RNPC3	95	53.535	Octodon_degus
ENSHCOG00000017135	rnpc3	97	76.844	ENSONIG00000004770	rnpc3	99	76.844	Oreochromis_niloticus
ENSHCOG00000017135	rnpc3	92	55.319	ENSOANG00000008220	RNPC3	99	55.319	Ornithorhynchus_anatinus
ENSHCOG00000017135	rnpc3	97	54.691	ENSOCUG00000004016	RNPC3	96	54.274	Oryctolagus_cuniculus
ENSHCOG00000017135	rnpc3	100	73.465	ENSORLG00000005694	rnpc3	99	73.465	Oryzias_latipes
ENSHCOG00000017135	rnpc3	100	73.611	ENSORLG00020005513	rnpc3	99	73.611	Oryzias_latipes_hni
ENSHCOG00000017135	rnpc3	99	73.360	ENSORLG00015002179	rnpc3	99	73.360	Oryzias_latipes_hsok
ENSHCOG00000017135	rnpc3	100	73.016	ENSOMEG00000017737	rnpc3	99	73.016	Oryzias_melastigma
ENSHCOG00000017135	rnpc3	97	54.890	ENSOGAG00000026182	RNPC3	95	54.890	Otolemur_garnettii
ENSHCOG00000017135	rnpc3	97	53.908	ENSOARG00000018719	RNPC3	95	53.213	Ovis_aries
ENSHCOG00000017135	rnpc3	97	54.709	ENSPPAG00000037459	RNPC3	95	54.709	Pan_paniscus
ENSHCOG00000017135	rnpc3	97	47.590	ENSPPAG00000030278	-	97	47.189	Pan_paniscus
ENSHCOG00000017135	rnpc3	97	54.527	ENSPPRG00000020246	RNPC3	95	54.527	Panthera_pardus
ENSHCOG00000017135	rnpc3	97	54.527	ENSPTIG00000009887	RNPC3	97	54.527	Panthera_tigris_altaica
ENSHCOG00000017135	rnpc3	96	47.347	ENSPTRG00000044227	-	97	46.869	Pan_troglodytes
ENSHCOG00000017135	rnpc3	97	54.819	ENSPTRG00000033902	RNPC3	95	54.819	Pan_troglodytes
ENSHCOG00000017135	rnpc3	97	44.489	ENSPANG00000029957	-	97	43.513	Papio_anubis
ENSHCOG00000017135	rnpc3	97	54.949	ENSPANG00000012137	RNPC3	95	54.949	Papio_anubis
ENSHCOG00000017135	rnpc3	98	66.197	ENSPKIG00000008828	rnpc3	97	63.454	Paramormyrops_kingsleyae
ENSHCOG00000017135	rnpc3	65	53.474	ENSPSIG00000007396	RNPC3	99	52.994	Pelodiscus_sinensis
ENSHCOG00000017135	rnpc3	100	61.719	ENSPMGG00000011742	rnpc3	100	61.719	Periophthalmus_magnuspinnatus
ENSHCOG00000017135	rnpc3	89	52.609	ENSPEMG00000020112	Rnpc3	100	52.288	Peromyscus_maniculatus_bairdii
ENSHCOG00000017135	rnpc3	97	42.910	ENSPMAG00000003778	rnpc3	97	45.857	Petromyzon_marinus
ENSHCOG00000017135	rnpc3	98	54.509	ENSPCIG00000004415	-	97	54.274	Phascolarctos_cinereus
ENSHCOG00000017135	rnpc3	99	74.653	ENSPFOG00000009895	rnpc3	99	74.653	Poecilia_formosa
ENSHCOG00000017135	rnpc3	99	74.851	ENSPLAG00000012023	rnpc3	99	74.851	Poecilia_latipinna
ENSHCOG00000017135	rnpc3	99	74.901	ENSPMEG00000003663	rnpc3	99	74.851	Poecilia_mexicana
ENSHCOG00000017135	rnpc3	100	74.606	ENSPREG00000010206	rnpc3	99	74.606	Poecilia_reticulata
ENSHCOG00000017135	rnpc3	81	51.325	ENSPPYG00000001102	RNPC3	94	51.325	Pongo_abelii
ENSHCOG00000017135	rnpc3	99	74.553	ENSPNYG00000020603	rnpc3	99	74.553	Pundamilia_nyererei
ENSHCOG00000017135	rnpc3	98	56.487	ENSPNAG00000000524	rnpc3	89	56.262	Pygocentrus_nattereri
ENSHCOG00000017135	rnpc3	97	55.242	ENSRNOG00000017310	Rnpc3	95	55.242	Rattus_norvegicus
ENSHCOG00000017135	rnpc3	97	51.107	ENSRBIG00000043897	RNPC3	95	51.107	Rhinopithecus_bieti
ENSHCOG00000017135	rnpc3	97	54.839	ENSRROG00000032334	RNPC3	95	54.839	Rhinopithecus_roxellana
ENSHCOG00000017135	rnpc3	97	54.980	ENSSBOG00000024473	RNPC3	96	54.980	Saimiri_boliviensis_boliviensis
ENSHCOG00000017135	rnpc3	98	54.309	ENSSHAG00000011859	RNPC3	97	54.076	Sarcophilus_harrisii
ENSHCOG00000017135	rnpc3	98	66.331	ENSSFOG00015013055	rnpc3	99	66.667	Scleropages_formosus
ENSHCOG00000017135	rnpc3	100	73.346	ENSSMAG00000020346	rnpc3	99	73.346	Scophthalmus_maximus
ENSHCOG00000017135	rnpc3	100	74.609	ENSSDUG00000006600	rnpc3	99	74.609	Seriola_dumerili
ENSHCOG00000017135	rnpc3	100	74.609	ENSSLDG00000007979	rnpc3	99	74.609	Seriola_lalandi_dorsalis
ENSHCOG00000017135	rnpc3	95	56.701	ENSSPUG00000008539	-	92	56.879	Sphenodon_punctatus
ENSHCOG00000017135	rnpc3	98	51.619	ENSSPUG00000003872	-	92	52.218	Sphenodon_punctatus
ENSHCOG00000017135	rnpc3	100	75.494	ENSSPAG00000005633	rnpc3	99	75.494	Stegastes_partitus
ENSHCOG00000017135	rnpc3	97	55.020	ENSSSCG00000037254	RNPC3	95	53.614	Sus_scrofa
ENSHCOG00000017135	rnpc3	89	56.484	ENSTGUG00000004795	-	99	56.484	Taeniopygia_guttata
ENSHCOG00000017135	rnpc3	100	73.819	ENSTNIG00000018963	rnpc3	100	73.819	Tetraodon_nigroviridis
ENSHCOG00000017135	rnpc3	97	54.418	ENSUMAG00000007775	RNPC3	97	54.418	Ursus_maritimus
ENSHCOG00000017135	rnpc3	97	54.016	ENSVVUG00000000331	RNPC3	95	54.016	Vulpes_vulpes
ENSHCOG00000017135	rnpc3	97	45.168	ENSXETG00000025027	rnpc3	96	43.713	Xenopus_tropicalis
ENSHCOG00000017135	rnpc3	100	73.643	ENSXCOG00000005013	rnpc3	99	73.450	Xiphophorus_couchianus
ENSHCOG00000017135	rnpc3	100	74.067	ENSXMAG00000006495	rnpc3	99	74.067	Xiphophorus_maculatus