EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000017136 (Gene tree)
Gene ID: 109525344
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 3310 bases
Position: chrKV880238.1:2886098-2889407
Accession: 109525344
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000013897	TUDOR	PF00567.24	2.5e-06	1	1
ENSHCOP00000013897	SMN	PF06003.12	3.2e-102	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000021352	-	1648	XM_019885774	ENSHCOP00000013897	295 (aa)	XP_019741333	-

Gene Model

Click here to download ENSHCOG00000017136's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000017136's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000017136	smn1	87	50.000	ENSG00000172062	SMN1	86	80.851	Homo_sapiens
ENSHCOG00000017136	smn1	87	50.000	ENSG00000205571	SMN2	86	80.851	Homo_sapiens
ENSHCOG00000017136	smn1	89	75.849	ENSAPOG00000011324	smn1	94	75.849	Acanthochromis_polyacanthus
ENSHCOG00000017136	smn1	87	51.880	ENSAMEG00000003316	-	86	52.416	Ailuropoda_melanoleuca
ENSHCOG00000017136	smn1	58	71.765	ENSACIG00000007598	smn1	94	74.118	Amphilophus_citrinellus
ENSHCOG00000017136	smn1	88	69.582	ENSACIG00000019772	-	99	69.962	Amphilophus_citrinellus
ENSHCOG00000017136	smn1	89	75.849	ENSAOCG00000024444	smn1	94	75.849	Amphiprion_ocellaris
ENSHCOG00000017136	smn1	89	76.226	ENSAPEG00000016504	smn1	94	76.226	Amphiprion_percula
ENSHCOG00000017136	smn1	99	70.608	ENSATEG00000002182	smn1	90	70.608	Anabas_testudineus
ENSHCOG00000017136	smn1	62	43.077	ENSAPLG00000010912	-	97	43.541	Anas_platyrhynchos
ENSHCOG00000017136	smn1	93	48.763	ENSACAG00000010017	-	96	47.350	Anolis_carolinensis
ENSHCOG00000017136	smn1	87	46.415	ENSANAG00000032133	-	89	51.119	Aotus_nancymaae
ENSHCOG00000017136	smn1	89	76.515	ENSACLG00000007308	smn1	99	70.345	Astatotilapia_calliptera
ENSHCOG00000017136	smn1	89	56.716	ENSAMXG00000013884	smn1	94	63.910	Astyanax_mexicanus
ENSHCOG00000017136	smn1	87	47.584	ENSBTAG00000005743	SMN2	90	49.627	Bos_taurus
ENSHCOG00000017136	smn1	87	50.584	ENSCJAG00000016290	-	85	82.609	Callithrix_jacchus
ENSHCOG00000017136	smn1	87	50.190	ENSCAFG00000007812	SMN	90	50.000	Canis_familiaris
ENSHCOG00000017136	smn1	88	49.624	ENSCAFG00020019229	-	84	50.000	Canis_lupus_dingo
ENSHCOG00000017136	smn1	87	47.037	ENSCHIG00000015559	-	88	49.071	Capra_hircus
ENSHCOG00000017136	smn1	92	49.091	ENSTSYG00000012058	-	95	49.470	Carlito_syrichta
ENSHCOG00000017136	smn1	74	42.793	ENSCAPG00000011021	-	87	39.130	Cavia_aperea
ENSHCOG00000017136	smn1	87	46.415	ENSCPOG00000036973	-	89	50.185	Cavia_porcellus
ENSHCOG00000017136	smn1	87	46.863	ENSCPOG00000012328	-	90	50.362	Cavia_porcellus
ENSHCOG00000017136	smn1	87	48.047	ENSCCAG00000018127	-	86	80.851	Cebus_capucinus
ENSHCOG00000017136	smn1	87	53.053	ENSCATG00000037002	-	81	80.851	Cercocebus_atys
ENSHCOG00000017136	smn1	87	46.067	ENSCLAG00000000284	-	88	48.897	Chinchilla_lanigera
ENSHCOG00000017136	smn1	87	50.951	ENSCSAG00000015688	-	88	49.815	Chlorocebus_sabaeus
ENSHCOG00000017136	smn1	59	80.000	ENSCHOG00000007346	-	100	42.424	Choloepus_hoffmanni
ENSHCOG00000017136	smn1	92	47.518	ENSCPBG00000010968	-	97	46.442	Chrysemys_picta_bellii
ENSHCOG00000017136	smn1	91	46.350	ENSCANG00000033324	-	93	46.127	Colobus_angolensis_palliatus
ENSHCOG00000017136	smn1	87	51.724	ENSCANG00000038242	-	85	80.851	Colobus_angolensis_palliatus
ENSHCOG00000017136	smn1	87	36.576	ENSCGRG00001016998	-	87	37.313	Cricetulus_griseus_chok1gshd
ENSHCOG00000017136	smn1	87	50.385	ENSCGRG00001017959	-	90	50.000	Cricetulus_griseus_chok1gshd
ENSHCOG00000017136	smn1	87	50.385	ENSCGRG00000007698	Smn1	90	50.000	Cricetulus_griseus_crigri
ENSHCOG00000017136	smn1	89	65.455	ENSCSEG00000015227	smn1	96	65.818	Cynoglossus_semilaevis
ENSHCOG00000017136	smn1	89	72.659	ENSCVAG00000007498	smn1	94	72.659	Cyprinodon_variegatus
ENSHCOG00000017136	smn1	89	64.045	ENSDARG00000018494	smn1	94	65.672	Danio_rerio
ENSHCOG00000017136	smn1	75	41.739	ENSDNOG00000007283	-	82	45.673	Dasypus_novemcinctus
ENSHCOG00000017136	smn1	87	42.366	ENSDORG00000007082	Smn1	91	43.123	Dipodomys_ordii
ENSHCOG00000017136	smn1	57	44.767	ENSETEG00000001406	-	91	44.149	Echinops_telfairi
ENSHCOG00000017136	smn1	89	35.517	ENSEBUG00000011902	smn1	94	36.395	Eptatretus_burgeri
ENSHCOG00000017136	smn1	86	46.538	ENSEASG00005018000	-	93	44.161	Equus_asinus_asinus
ENSHCOG00000017136	smn1	87	51.527	ENSECAG00000015215	-	90	49.265	Equus_caballus
ENSHCOG00000017136	smn1	84	47.510	ENSEEUG00000015777	-	100	45.420	Erinaceus_europaeus
ENSHCOG00000017136	smn1	89	64.639	ENSELUG00000018067	smn1	94	60.440	Esox_lucius
ENSHCOG00000017136	smn1	93	48.410	ENSFCAG00000028292	SMN	95	48.780	Felis_catus
ENSHCOG00000017136	smn1	88	51.301	ENSFALG00000012320	-	95	50.725	Ficedula_albicollis
ENSHCOG00000017136	smn1	87	46.269	ENSFDAG00000017683	-	89	49.270	Fukomys_damarensis
ENSHCOG00000017136	smn1	86	74.419	ENSFHEG00000018508	smn1	93	74.806	Fundulus_heteroclitus
ENSHCOG00000017136	smn1	89	63.498	ENSGMOG00000017279	smn1	91	65.779	Gadus_morhua
ENSHCOG00000017136	smn1	91	46.209	ENSGALG00000002430	SMN	96	48.746	Gallus_gallus
ENSHCOG00000017136	smn1	89	72.830	ENSGAFG00000009501	smn1	94	72.285	Gambusia_affinis
ENSHCOG00000017136	smn1	89	75.665	ENSGACG00000010584	smn1	91	74.905	Gasterosteus_aculeatus
ENSHCOG00000017136	smn1	92	47.653	ENSGAGG00000011374	-	96	47.018	Gopherus_agassizii
ENSHCOG00000017136	smn1	65	39.130	ENSGAGG00000013639	-	88	35.821	Gopherus_agassizii
ENSHCOG00000017136	smn1	69	50.000	ENSGGOG00000026704	-	90	51.269	Gorilla_gorilla
ENSHCOG00000017136	smn1	87	48.062	ENSGGOG00000003872	-	93	47.510	Gorilla_gorilla
ENSHCOG00000017136	smn1	89	76.426	ENSHBUG00000013987	smn1	94	76.046	Haplochromis_burtoni
ENSHCOG00000017136	smn1	87	45.283	ENSHGLG00000001018	-	89	47.985	Heterocephalus_glaber_female
ENSHCOG00000017136	smn1	87	47.566	ENSHGLG00000001905	-	90	44.853	Heterocephalus_glaber_female
ENSHCOG00000017136	smn1	87	47.566	ENSHGLG00100018676	-	94	44.853	Heterocephalus_glaber_male
ENSHCOG00000017136	smn1	87	45.283	ENSHGLG00100011252	-	89	47.985	Heterocephalus_glaber_male
ENSHCOG00000017136	smn1	89	65.038	ENSIPUG00000012580	smn1	83	63.910	Ictalurus_punctatus
ENSHCOG00000017136	smn1	87	50.951	ENSSTOG00000012288	-	93	52.075	Ictidomys_tridecemlineatus
ENSHCOG00000017136	smn1	89	72.015	ENSKMAG00000007239	smn1	94	67.260	Kryptolebias_marmoratus
ENSHCOG00000017136	smn1	89	73.684	ENSLBEG00000022550	smn1	94	69.534	Labrus_bergylta
ENSHCOG00000017136	smn1	88	31.597	ENSLACG00000009808	-	88	35.165	Latimeria_chalumnae
ENSHCOG00000017136	smn1	89	55.019	ENSLOCG00000011339	smn1	94	57.091	Lepisosteus_oculatus
ENSHCOG00000017136	smn1	87	45.455	ENSLAFG00000003425	-	99	36.207	Loxodonta_africana
ENSHCOG00000017136	smn1	87	51.331	ENSMFAG00000031523	SMN1	85	82.609	Macaca_fascicularis
ENSHCOG00000017136	smn1	86	49.042	ENSMFAG00000008812	-	88	47.232	Macaca_fascicularis
ENSHCOG00000017136	smn1	87	51.331	ENSMMUG00000020214	SMN1	85	82.609	Macaca_mulatta
ENSHCOG00000017136	smn1	86	48.276	ENSMMUG00000030594	-	88	46.494	Macaca_mulatta
ENSHCOG00000017136	smn1	56	41.765	ENSMNEG00000036423	-	68	41.111	Macaca_nemestrina
ENSHCOG00000017136	smn1	87	51.331	ENSMNEG00000035094	-	78	82.609	Macaca_nemestrina
ENSHCOG00000017136	smn1	87	51.331	ENSMLEG00000041902	-	86	82.609	Mandrillus_leucophaeus
ENSHCOG00000017136	smn1	99	70.134	ENSMAMG00000011034	smn1	94	75.940	Mastacembelus_armatus
ENSHCOG00000017136	smn1	89	76.806	ENSMZEG00005013634	smn1	94	76.426	Maylandia_zebra
ENSHCOG00000017136	smn1	62	44.271	ENSMGAG00000008889	-	89	40.741	Meleagris_gallopavo
ENSHCOG00000017136	smn1	87	48.249	ENSMAUG00000010262	Smn1	90	49.814	Mesocricetus_auratus
ENSHCOG00000017136	smn1	74	48.858	ENSMICG00000034708	-	81	54.945	Microcebus_murinus
ENSHCOG00000017136	smn1	88	52.091	ENSMOCG00000017833	Smn1	90	51.648	Microtus_ochrogaster
ENSHCOG00000017136	smn1	89	64.794	ENSMMOG00000005504	smn1	100	62.021	Mola_mola
ENSHCOG00000017136	smn1	87	49.632	ENSMODG00000001436	-	89	47.955	Monodelphis_domestica
ENSHCOG00000017136	smn1	89	75.564	ENSMALG00000008025	smn1	94	75.940	Monopterus_albus
ENSHCOG00000017136	smn1	87	50.388	MGP_CAROLIEiJ_G0018836	Smn1	90	50.186	Mus_caroli
ENSHCOG00000017136	smn1	87	50.000	ENSMUSG00000021645	Smn1	90	49.814	Mus_musculus
ENSHCOG00000017136	smn1	87	46.693	MGP_PahariEiJ_G0015911	Smn1	90	50.000	Mus_pahari
ENSHCOG00000017136	smn1	87	49.612	MGP_SPRETEiJ_G0019718	Smn1	90	49.814	Mus_spretus
ENSHCOG00000017136	smn1	87	51.685	ENSMPUG00000014470	-	93	51.471	Mustela_putorius_furo
ENSHCOG00000017136	smn1	87	50.186	ENSMLUG00000010603	-	86	50.362	Myotis_lucifugus
ENSHCOG00000017136	smn1	87	50.376	ENSNGAG00000019833	Smn1	90	50.370	Nannospalax_galili
ENSHCOG00000017136	smn1	89	76.226	ENSNBRG00000023000	smn1	94	76.604	Neolamprologus_brichardi
ENSHCOG00000017136	smn1	87	50.379	ENSNLEG00000004454	-	86	80.851	Nomascus_leucogenys
ENSHCOG00000017136	smn1	63	51.777	ENSMEUG00000011393	-	87	46.635	Notamacropus_eugenii
ENSHCOG00000017136	smn1	84	45.455	ENSOPRG00000002015	-	100	47.909	Ochotona_princeps
ENSHCOG00000017136	smn1	87	48.699	ENSODEG00000015976	-	92	52.963	Octodon_degus
ENSHCOG00000017136	smn1	89	75.472	ENSONIG00000011799	smn1	94	75.849	Oreochromis_niloticus
ENSHCOG00000017136	smn1	86	43.262	ENSOANG00000001626	-	91	47.388	Ornithorhynchus_anatinus
ENSHCOG00000017136	smn1	87	39.326	ENSOCUG00000025183	-	89	39.928	Oryctolagus_cuniculus
ENSHCOG00000017136	smn1	87	50.575	ENSOCUG00000017097	-	88	51.880	Oryctolagus_cuniculus
ENSHCOG00000017136	smn1	87	50.376	ENSOCUG00000026649	-	94	49.477	Oryctolagus_cuniculus
ENSHCOG00000017136	smn1	89	73.585	ENSORLG00000010552	smn1	94	69.065	Oryzias_latipes
ENSHCOG00000017136	smn1	89	67.293	ENSORLG00020007936	smn1	93	62.366	Oryzias_latipes_hni
ENSHCOG00000017136	smn1	89	73.208	ENSORLG00015022425	smn1	94	72.830	Oryzias_latipes_hsok
ENSHCOG00000017136	smn1	89	74.340	ENSOMEG00000007824	smn1	94	73.962	Oryzias_melastigma
ENSHCOG00000017136	smn1	87	46.715	ENSOGAG00000031414	-	92	44.964	Otolemur_garnettii
ENSHCOG00000017136	smn1	86	45.693	ENSOARG00000005425	-	94	47.940	Ovis_aries
ENSHCOG00000017136	smn1	87	49.621	ENSPPAG00000036640	-	86	80.851	Pan_paniscus
ENSHCOG00000017136	smn1	87	50.752	ENSPPRG00000005575	-	90	49.815	Panthera_pardus
ENSHCOG00000017136	smn1	87	50.562	ENSPTIG00000007745	-	90	50.183	Panthera_tigris_altaica
ENSHCOG00000017136	smn1	87	50.558	ENSPTRG00000016955	-	87	80.851	Pan_troglodytes
ENSHCOG00000017136	smn1	87	51.331	ENSPANG00000013601	-	85	80.851	Papio_anubis
ENSHCOG00000017136	smn1	86	49.042	ENSPANG00000000253	-	88	47.810	Papio_anubis
ENSHCOG00000017136	smn1	89	57.836	ENSPKIG00000011096	smn1	93	54.717	Paramormyrops_kingsleyae
ENSHCOG00000017136	smn1	88	46.296	ENSPSIG00000014787	-	84	46.125	Pelodiscus_sinensis
ENSHCOG00000017136	smn1	91	69.853	ENSPMGG00000012285	smn1	99	66.312	Periophthalmus_magnuspinnatus
ENSHCOG00000017136	smn1	84	40.441	ENSPMAG00000005004	smn1	89	36.861	Petromyzon_marinus
ENSHCOG00000017136	smn1	87	51.866	ENSPCIG00000025764	-	90	47.015	Phascolarctos_cinereus
ENSHCOG00000017136	smn1	89	72.453	ENSPFOG00000007786	smn1	94	67.986	Poecilia_formosa
ENSHCOG00000017136	smn1	89	72.830	ENSPLAG00000012071	smn1	94	68.345	Poecilia_latipinna
ENSHCOG00000017136	smn1	89	72.453	ENSPMEG00000017085	smn1	94	67.986	Poecilia_mexicana
ENSHCOG00000017136	smn1	89	72.453	ENSPREG00000005824	smn1	94	71.910	Poecilia_reticulata
ENSHCOG00000017136	smn1	84	48.638	ENSPPYG00000015533	-	92	50.000	Pongo_abelii
ENSHCOG00000017136	smn1	84	47.674	ENSPCAG00000004187	-	94	44.195	Procavia_capensis
ENSHCOG00000017136	smn1	60	49.432	ENSPCOG00000022307	-	76	49.704	Propithecus_coquereli
ENSHCOG00000017136	smn1	87	51.724	ENSPVAG00000005977	-	89	52.222	Pteropus_vampyrus
ENSHCOG00000017136	smn1	89	76.226	ENSPNYG00000014148	smn1	94	76.604	Pundamilia_nyererei
ENSHCOG00000017136	smn1	89	66.038	ENSPNAG00000014007	smn1	82	63.396	Pygocentrus_nattereri
ENSHCOG00000017136	smn1	87	49.612	ENSRNOG00000018067	Smn1	89	49.438	Rattus_norvegicus
ENSHCOG00000017136	smn1	87	49.042	ENSRBIG00000036775	-	88	46.970	Rhinopithecus_bieti
ENSHCOG00000017136	smn1	87	50.951	ENSRBIG00000037052	-	85	80.851	Rhinopithecus_bieti
ENSHCOG00000017136	smn1	87	50.951	ENSRROG00000039399	-	85	80.851	Rhinopithecus_roxellana
ENSHCOG00000017136	smn1	87	48.855	ENSRROG00000031088	-	90	45.174	Rhinopithecus_roxellana
ENSHCOG00000017136	smn1	56	49.398	ENSSBOG00000020112	-	92	43.657	Saimiri_boliviensis_boliviensis
ENSHCOG00000017136	smn1	87	50.579	ENSSBOG00000011665	-	84	82.609	Saimiri_boliviensis_boliviensis
ENSHCOG00000017136	smn1	87	52.612	ENSSHAG00000001499	-	91	46.538	Sarcophilus_harrisii
ENSHCOG00000017136	smn1	89	56.429	ENSSFOG00015015507	smn1	93	55.474	Scleropages_formosus
ENSHCOG00000017136	smn1	89	70.943	ENSSMAG00000007922	smn1	94	73.208	Scophthalmus_maximus
ENSHCOG00000017136	smn1	89	77.444	ENSSDUG00000018533	smn1	94	79.699	Seriola_dumerili
ENSHCOG00000017136	smn1	89	77.820	ENSSLDG00000021135	smn1	94	80.075	Seriola_lalandi_dorsalis
ENSHCOG00000017136	smn1	92	51.761	ENSSPUG00000000373	-	98	50.000	Sphenodon_punctatus
ENSHCOG00000017136	smn1	89	79.245	ENSSPAG00000004345	smn1	94	78.491	Stegastes_partitus
ENSHCOG00000017136	smn1	87	50.000	ENSSSCG00000016970	-	88	51.311	Sus_scrofa
ENSHCOG00000017136	smn1	86	40.684	ENSSSCG00000029127	-	74	58.475	Sus_scrofa
ENSHCOG00000017136	smn1	89	48.746	ENSTGUG00000001548	-	97	47.653	Taeniopygia_guttata
ENSHCOG00000017136	smn1	89	66.288	ENSTRUG00000000736	smn	94	67.424	Takifugu_rubripes
ENSHCOG00000017136	smn1	89	62.271	ENSTNIG00000009892	smn1	94	60.886	Tetraodon_nigroviridis
ENSHCOG00000017136	smn1	52	57.051	ENSTBEG00000002399	-	88	53.804	Tupaia_belangeri
ENSHCOG00000017136	smn1	52	57.692	ENSTTRG00000005080	-	88	53.008	Tursiops_truncatus
ENSHCOG00000017136	smn1	52	58.974	ENSUAMG00000024947	-	67	54.945	Ursus_americanus
ENSHCOG00000017136	smn1	87	51.504	ENSUMAG00000007842	-	67	52.222	Ursus_maritimus
ENSHCOG00000017136	smn1	59	76.000	ENSVPAG00000009887	-	93	49.237	Vicugna_pacos
ENSHCOG00000017136	smn1	88	49.624	ENSVVUG00000006934	-	90	50.000	Vulpes_vulpes
ENSHCOG00000017136	smn1	83	33.588	ENSXETG00000004912	-	76	62.264	Xenopus_tropicalis
ENSHCOG00000017136	smn1	87	54.307	ENSXETG00000018189	smn2	88	49.281	Xenopus_tropicalis
ENSHCOG00000017136	smn1	89	72.075	ENSXMAG00000001521	smn1	94	73.208	Xiphophorus_maculatus