EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000017233 (Gene tree)
Gene ID: 109511571
Gene Symbol: lsm1
Alias: zgc:101136
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 2934 bases
Position: chrKV879800.1:239947-242880
Accession: 109511571
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000013978	LSM	PF01423.22	2.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000021462	-	993	XM_019862731	ENSHCOP00000013978	133 (aa)	XP_019718290	UPI00094E0BFA

Gene Model

Click here to download ENSHCOG00000017233's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000017233's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000017233	lsm1	54	34.247	ENSHCOG00000005037	lsm8	76	34.247

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000017233	lsm1	100	84.211	ENSG00000175324	LSM1	100	84.211	Homo_sapiens
ENSHCOG00000017233	lsm1	100	97.744	ENSAPOG00000010833	lsm1	100	97.744	Acanthochromis_polyacanthus
ENSHCOG00000017233	lsm1	100	84.211	ENSAMEG00000011141	LSM1	100	84.211	Ailuropoda_melanoleuca
ENSHCOG00000017233	lsm1	58	98.701	ENSACIG00000019593	lsm1	64	98.701	Amphilophus_citrinellus
ENSHCOG00000017233	lsm1	100	97.744	ENSAOCG00000017096	lsm1	100	97.744	Amphiprion_ocellaris
ENSHCOG00000017233	lsm1	100	97.744	ENSAOCG00000017997	-	100	97.744	Amphiprion_ocellaris
ENSHCOG00000017233	lsm1	100	97.744	ENSAPEG00000011669	lsm1	100	97.744	Amphiprion_percula
ENSHCOG00000017233	lsm1	100	97.744	ENSATEG00000022266	lsm1	100	97.744	Anabas_testudineus
ENSHCOG00000017233	lsm1	100	84.211	ENSANAG00000027785	LSM1	100	84.211	Aotus_nancymaae
ENSHCOG00000017233	lsm1	100	96.992	ENSACLG00000011400	lsm1	100	96.992	Astatotilapia_calliptera
ENSHCOG00000017233	lsm1	100	81.955	ENSAMXG00000005441	lsm1	100	81.955	Astyanax_mexicanus
ENSHCOG00000017233	lsm1	100	83.459	ENSBTAG00000001612	LSM1	100	83.459	Bos_taurus
ENSHCOG00000017233	lsm1	70	55.914	WBGene00003076	lsm-1	73	55.914	Caenorhabditis_elegans
ENSHCOG00000017233	lsm1	100	83.459	ENSCJAG00000048015	LSM1	100	83.459	Callithrix_jacchus
ENSHCOG00000017233	lsm1	100	84.211	ENSCAFG00000006113	LSM1	100	84.211	Canis_familiaris
ENSHCOG00000017233	lsm1	100	84.211	ENSCAFG00020001822	LSM1	100	84.211	Canis_lupus_dingo
ENSHCOG00000017233	lsm1	100	84.211	ENSCHIG00000013194	LSM1	100	84.211	Capra_hircus
ENSHCOG00000017233	lsm1	100	84.211	ENSTSYG00000010394	LSM1	100	84.211	Carlito_syrichta
ENSHCOG00000017233	lsm1	100	84.211	ENSCPOG00000032671	LSM1	100	84.211	Cavia_porcellus
ENSHCOG00000017233	lsm1	100	84.211	ENSCCAG00000037171	LSM1	100	84.211	Cebus_capucinus
ENSHCOG00000017233	lsm1	100	84.211	ENSCATG00000020377	LSM1	100	84.211	Cercocebus_atys
ENSHCOG00000017233	lsm1	100	82.707	ENSCLAG00000001137	LSM1	100	82.707	Chinchilla_lanigera
ENSHCOG00000017233	lsm1	100	84.211	ENSCSAG00000015485	LSM1	100	84.211	Chlorocebus_sabaeus
ENSHCOG00000017233	lsm1	100	83.459	ENSCHOG00000006030	LSM1	100	83.459	Choloepus_hoffmanni
ENSHCOG00000017233	lsm1	95	78.740	ENSCPBG00000006569	LSM1	86	78.740	Chrysemys_picta_bellii
ENSHCOG00000017233	lsm1	99	63.636	ENSCING00000013536	-	100	62.879	Ciona_intestinalis
ENSHCOG00000017233	lsm1	100	84.211	ENSCANG00000019173	LSM1	100	84.211	Colobus_angolensis_palliatus
ENSHCOG00000017233	lsm1	100	83.459	ENSCGRG00001024560	-	100	83.459	Cricetulus_griseus_chok1gshd
ENSHCOG00000017233	lsm1	80	71.171	ENSCGRG00001002259	-	97	71.171	Cricetulus_griseus_chok1gshd
ENSHCOG00000017233	lsm1	100	83.459	ENSCGRG00000006554	-	100	83.459	Cricetulus_griseus_crigri
ENSHCOG00000017233	lsm1	80	71.171	ENSCGRG00000013603	-	97	71.171	Cricetulus_griseus_crigri
ENSHCOG00000017233	lsm1	100	94.737	ENSCSEG00000008319	lsm1	92	94.737	Cynoglossus_semilaevis
ENSHCOG00000017233	lsm1	100	96.992	ENSCSEG00000010570	lsm1	92	96.992	Cynoglossus_semilaevis
ENSHCOG00000017233	lsm1	100	96.241	ENSCVAG00000003871	lsm1	100	96.241	Cyprinodon_variegatus
ENSHCOG00000017233	lsm1	100	81.203	ENSDARG00000043177	lsm1	100	81.203	Danio_rerio
ENSHCOG00000017233	lsm1	100	83.459	ENSDNOG00000032911	-	100	83.459	Dasypus_novemcinctus
ENSHCOG00000017233	lsm1	100	84.211	ENSDNOG00000046387	-	100	84.211	Dasypus_novemcinctus
ENSHCOG00000017233	lsm1	99	79.545	ENSDNOG00000030989	-	99	79.545	Dasypus_novemcinctus
ENSHCOG00000017233	lsm1	89	65.546	ENSDNOG00000046620	-	100	65.546	Dasypus_novemcinctus
ENSHCOG00000017233	lsm1	100	84.211	ENSDORG00000028172	Lsm1	100	84.211	Dipodomys_ordii
ENSHCOG00000017233	lsm1	93	59.677	FBgn0261067	LSm1	91	59.677	Drosophila_melanogaster
ENSHCOG00000017233	lsm1	100	82.707	ENSEASG00005016677	LSM1	100	82.707	Equus_asinus_asinus
ENSHCOG00000017233	lsm1	100	82.707	ENSECAG00000010461	LSM1	100	82.707	Equus_caballus
ENSHCOG00000017233	lsm1	100	62.406	ENSEEUG00000015181	LSM1	100	62.406	Erinaceus_europaeus
ENSHCOG00000017233	lsm1	100	92.481	ENSELUG00000002322	lsm1	100	92.481	Esox_lucius
ENSHCOG00000017233	lsm1	100	76.692	ENSELUG00000023374	lsm1	100	76.692	Esox_lucius
ENSHCOG00000017233	lsm1	100	84.211	ENSFCAG00000039335	LSM1	100	84.211	Felis_catus
ENSHCOG00000017233	lsm1	89	82.203	ENSFALG00000006723	LSM1	100	82.203	Ficedula_albicollis
ENSHCOG00000017233	lsm1	100	84.211	ENSFDAG00000007658	LSM1	100	84.211	Fukomys_damarensis
ENSHCOG00000017233	lsm1	100	96.241	ENSFHEG00000009556	lsm1	100	96.241	Fundulus_heteroclitus
ENSHCOG00000017233	lsm1	100	94.737	ENSGMOG00000016651	lsm1	98	94.737	Gadus_morhua
ENSHCOG00000017233	lsm1	100	81.203	ENSGALG00000003245	LSM1	100	81.203	Gallus_gallus
ENSHCOG00000017233	lsm1	100	96.241	ENSGAFG00000011355	lsm1	100	96.241	Gambusia_affinis
ENSHCOG00000017233	lsm1	100	95.489	ENSGACG00000011763	lsm1	98	95.489	Gasterosteus_aculeatus
ENSHCOG00000017233	lsm1	100	84.211	ENSGAGG00000024065	LSM1	100	84.211	Gopherus_agassizii
ENSHCOG00000017233	lsm1	100	84.211	ENSGGOG00000022658	LSM1	100	84.211	Gorilla_gorilla
ENSHCOG00000017233	lsm1	100	96.992	ENSHBUG00000010897	lsm1	100	96.992	Haplochromis_burtoni
ENSHCOG00000017233	lsm1	100	84.211	ENSHGLG00000005711	LSM1	100	84.211	Heterocephalus_glaber_female
ENSHCOG00000017233	lsm1	100	68.421	ENSHGLG00000017574	-	100	68.421	Heterocephalus_glaber_female
ENSHCOG00000017233	lsm1	100	84.211	ENSHGLG00100017660	LSM1	100	84.211	Heterocephalus_glaber_male
ENSHCOG00000017233	lsm1	100	68.421	ENSHGLG00100012152	-	100	68.421	Heterocephalus_glaber_male
ENSHCOG00000017233	lsm1	100	80.451	ENSIPUG00000002312	LSM1	100	80.451	Ictalurus_punctatus
ENSHCOG00000017233	lsm1	62	86.747	ENSSTOG00000026870	LSM1	100	86.747	Ictidomys_tridecemlineatus
ENSHCOG00000017233	lsm1	100	83.459	ENSJJAG00000014605	-	100	83.459	Jaculus_jaculus
ENSHCOG00000017233	lsm1	100	97.744	ENSKMAG00000003016	lsm1	100	97.744	Kryptolebias_marmoratus
ENSHCOG00000017233	lsm1	100	96.992	ENSLBEG00000022352	lsm1	100	96.992	Labrus_bergylta
ENSHCOG00000017233	lsm1	90	80.833	ENSLACG00000010947	LSM1	99	80.833	Latimeria_chalumnae
ENSHCOG00000017233	lsm1	100	84.962	ENSLOCG00000015149	lsm1	100	84.962	Lepisosteus_oculatus
ENSHCOG00000017233	lsm1	100	84.211	ENSLAFG00000003534	LSM1	100	84.211	Loxodonta_africana
ENSHCOG00000017233	lsm1	100	84.211	ENSMFAG00000032661	LSM1	100	84.211	Macaca_fascicularis
ENSHCOG00000017233	lsm1	100	84.211	ENSMLEG00000034535	LSM1	100	84.211	Mandrillus_leucophaeus
ENSHCOG00000017233	lsm1	100	96.992	ENSMAMG00000007464	lsm1	100	96.992	Mastacembelus_armatus
ENSHCOG00000017233	lsm1	100	96.992	ENSMZEG00005010321	lsm1	100	96.992	Maylandia_zebra
ENSHCOG00000017233	lsm1	100	81.203	ENSMGAG00000002125	LSM1	100	81.203	Meleagris_gallopavo
ENSHCOG00000017233	lsm1	100	84.211	ENSMICG00000030726	LSM1	100	84.211	Microcebus_murinus
ENSHCOG00000017233	lsm1	100	83.459	ENSMOCG00000022817	Lsm1	100	83.459	Microtus_ochrogaster
ENSHCOG00000017233	lsm1	100	96.241	ENSMMOG00000015466	lsm1	100	96.241	Mola_mola
ENSHCOG00000017233	lsm1	100	84.962	ENSMODG00000010732	-	100	84.962	Monodelphis_domestica
ENSHCOG00000017233	lsm1	58	98.701	ENSMALG00000001478	lsm1	82	98.701	Monopterus_albus
ENSHCOG00000017233	lsm1	100	83.459	MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	Mus_caroli
ENSHCOG00000017233	lsm1	100	83.459	ENSMUSG00000037296	Lsm1	100	83.459	Mus_musculus
ENSHCOG00000017233	lsm1	100	83.459	MGP_PahariEiJ_G0021400	Lsm1	100	83.459	Mus_pahari
ENSHCOG00000017233	lsm1	100	83.459	MGP_SPRETEiJ_G0032049	Lsm1	100	83.459	Mus_spretus
ENSHCOG00000017233	lsm1	100	84.962	ENSMPUG00000009883	LSM1	100	84.962	Mustela_putorius_furo
ENSHCOG00000017233	lsm1	100	84.211	ENSMLUG00000003734	LSM1	100	84.211	Myotis_lucifugus
ENSHCOG00000017233	lsm1	100	83.459	ENSNGAG00000003753	Lsm1	100	83.459	Nannospalax_galili
ENSHCOG00000017233	lsm1	58	98.701	ENSNBRG00000017370	lsm1	66	98.701	Neolamprologus_brichardi
ENSHCOG00000017233	lsm1	100	84.211	ENSNLEG00000029390	LSM1	100	84.211	Nomascus_leucogenys
ENSHCOG00000017233	lsm1	100	84.962	ENSMEUG00000014077	LSM1	100	84.962	Notamacropus_eugenii
ENSHCOG00000017233	lsm1	88	78.632	ENSOPRG00000000333	LSM1	100	78.632	Ochotona_princeps
ENSHCOG00000017233	lsm1	100	84.211	ENSODEG00000004834	LSM1	100	84.211	Octodon_degus
ENSHCOG00000017233	lsm1	100	96.992	ENSONIG00000010782	lsm1	100	96.992	Oreochromis_niloticus
ENSHCOG00000017233	lsm1	100	84.962	ENSOANG00000003256	LSM1	100	84.962	Ornithorhynchus_anatinus
ENSHCOG00000017233	lsm1	100	84.211	ENSOCUG00000015399	LSM1	100	84.211	Oryctolagus_cuniculus
ENSHCOG00000017233	lsm1	100	96.241	ENSORLG00000030288	lsm1	100	96.241	Oryzias_latipes
ENSHCOG00000017233	lsm1	100	94.737	ENSORLG00020006213	-	86	94.737	Oryzias_latipes_hni
ENSHCOG00000017233	lsm1	100	96.241	ENSORLG00020003941	lsm1	100	96.241	Oryzias_latipes_hni
ENSHCOG00000017233	lsm1	100	96.241	ENSORLG00015018350	lsm1	100	96.241	Oryzias_latipes_hsok
ENSHCOG00000017233	lsm1	100	96.241	ENSOMEG00000012454	lsm1	100	96.241	Oryzias_melastigma
ENSHCOG00000017233	lsm1	100	84.211	ENSOGAG00000015161	LSM1	100	84.211	Otolemur_garnettii
ENSHCOG00000017233	lsm1	100	84.211	ENSOARG00000001317	LSM1	100	84.211	Ovis_aries
ENSHCOG00000017233	lsm1	100	84.211	ENSPPAG00000032279	LSM1	100	84.211	Pan_paniscus
ENSHCOG00000017233	lsm1	100	84.211	ENSPPRG00000014172	-	100	84.211	Panthera_pardus
ENSHCOG00000017233	lsm1	100	84.211	ENSPTIG00000010289	LSM1	100	84.211	Panthera_tigris_altaica
ENSHCOG00000017233	lsm1	100	84.211	ENSPTRG00000020169	LSM1	100	84.211	Pan_troglodytes
ENSHCOG00000017233	lsm1	100	84.211	ENSPANG00000008814	LSM1	100	84.211	Papio_anubis
ENSHCOG00000017233	lsm1	100	78.195	ENSPKIG00000019409	LSM1	99	78.195	Paramormyrops_kingsleyae
ENSHCOG00000017233	lsm1	100	84.962	ENSPKIG00000001839	lsm1	100	84.962	Paramormyrops_kingsleyae
ENSHCOG00000017233	lsm1	98	79.231	ENSPSIG00000012563	LSM1	99	79.231	Pelodiscus_sinensis
ENSHCOG00000017233	lsm1	58	98.701	ENSPMGG00000022999	lsm1	73	98.701	Periophthalmus_magnuspinnatus
ENSHCOG00000017233	lsm1	85	72.566	ENSPMAG00000002671	lsm1	100	72.566	Petromyzon_marinus
ENSHCOG00000017233	lsm1	100	83.459	ENSPCIG00000008880	LSM1	100	83.459	Phascolarctos_cinereus
ENSHCOG00000017233	lsm1	100	96.241	ENSPFOG00000016029	lsm1	100	96.241	Poecilia_formosa
ENSHCOG00000017233	lsm1	100	96.241	ENSPLAG00000007879	lsm1	100	96.241	Poecilia_latipinna
ENSHCOG00000017233	lsm1	100	96.241	ENSPMEG00000023550	lsm1	100	96.241	Poecilia_mexicana
ENSHCOG00000017233	lsm1	100	96.241	ENSPREG00000009574	lsm1	100	96.241	Poecilia_reticulata
ENSHCOG00000017233	lsm1	100	84.211	ENSPPYG00000018521	LSM1	100	84.211	Pongo_abelii
ENSHCOG00000017233	lsm1	100	84.211	ENSPCOG00000020901	-	100	84.211	Propithecus_coquereli
ENSHCOG00000017233	lsm1	100	84.211	ENSPVAG00000006016	LSM1	100	84.211	Pteropus_vampyrus
ENSHCOG00000017233	lsm1	100	96.992	ENSPNYG00000018067	lsm1	100	96.992	Pundamilia_nyererei
ENSHCOG00000017233	lsm1	100	81.203	ENSPNAG00000013707	lsm1	100	81.203	Pygocentrus_nattereri
ENSHCOG00000017233	lsm1	100	81.955	ENSRNOG00000015375	Lsm1	100	81.955	Rattus_norvegicus
ENSHCOG00000017233	lsm1	100	84.211	ENSRBIG00000027449	LSM1	100	84.211	Rhinopithecus_bieti
ENSHCOG00000017233	lsm1	100	84.211	ENSRROG00000036074	LSM1	100	84.211	Rhinopithecus_roxellana
ENSHCOG00000017233	lsm1	74	42.727	YJL124C	LSM1	63	42.727	Saccharomyces_cerevisiae
ENSHCOG00000017233	lsm1	100	84.962	ENSSHAG00000017260	LSM1	100	84.962	Sarcophilus_harrisii
ENSHCOG00000017233	lsm1	100	84.211	ENSSFOG00015019528	lsm1	100	84.211	Scleropages_formosus
ENSHCOG00000017233	lsm1	100	97.744	ENSSMAG00000004930	lsm1	100	97.744	Scophthalmus_maximus
ENSHCOG00000017233	lsm1	100	96.241	ENSSDUG00000021823	lsm1	100	96.241	Seriola_dumerili
ENSHCOG00000017233	lsm1	100	96.241	ENSSLDG00000012154	lsm1	100	96.241	Seriola_lalandi_dorsalis
ENSHCOG00000017233	lsm1	100	84.211	ENSSPUG00000014878	LSM1	100	84.211	Sphenodon_punctatus
ENSHCOG00000017233	lsm1	100	98.496	ENSSPAG00000020548	lsm1	100	98.496	Stegastes_partitus
ENSHCOG00000017233	lsm1	100	82.707	ENSSSCG00000039058	LSM1	100	82.707	Sus_scrofa
ENSHCOG00000017233	lsm1	100	83.459	ENSTGUG00000004793	LSM1	100	83.459	Taeniopygia_guttata
ENSHCOG00000017233	lsm1	100	93.985	ENSTRUG00000025239	lsm1	100	93.985	Takifugu_rubripes
ENSHCOG00000017233	lsm1	100	90.977	ENSTNIG00000004055	lsm1	100	90.977	Tetraodon_nigroviridis
ENSHCOG00000017233	lsm1	88	82.906	ENSTBEG00000015884	LSM1	100	82.906	Tupaia_belangeri
ENSHCOG00000017233	lsm1	100	84.211	ENSTTRG00000004482	LSM1	100	84.211	Tursiops_truncatus
ENSHCOG00000017233	lsm1	100	84.211	ENSUAMG00000004103	LSM1	100	84.211	Ursus_americanus
ENSHCOG00000017233	lsm1	100	84.211	ENSUMAG00000009132	LSM1	100	84.211	Ursus_maritimus
ENSHCOG00000017233	lsm1	58	89.610	ENSVPAG00000011593	LSM1	100	89.610	Vicugna_pacos
ENSHCOG00000017233	lsm1	61	64.198	ENSVVUG00000014880	-	86	64.198	Vulpes_vulpes
ENSHCOG00000017233	lsm1	100	84.211	ENSVVUG00000020191	LSM1	100	84.211	Vulpes_vulpes
ENSHCOG00000017233	lsm1	100	79.562	ENSXETG00000009004	lsm1	100	79.562	Xenopus_tropicalis
ENSHCOG00000017233	lsm1	100	94.737	ENSXCOG00000015631	lsm1	100	94.737	Xiphophorus_couchianus
ENSHCOG00000017233	lsm1	100	94.737	ENSXMAG00000026637	lsm1	100	94.737	Xiphophorus_maculatus