EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000017425 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: probable ribonuclease ZC3H12C
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 5461 bases
Position: chrKV879731.1:804443-809903
Accession: 109522303
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000026453	RNase_Zc3h12a	PF11977.8	3.3e-65	1	1
ENSHCOP00000014143	RNase_Zc3h12a	PF11977.8	6.8e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000021661	-	573	-	ENSHCOP00000014143	190 (aa)	-	-
ENSHCOT00000021638	-	1512	XM_019880730	ENSHCOP00000026453	503 (aa)	XP_019736289	-

Gene Model

Click here to download ENSHCOG00000017425's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000017425's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000017425	-	75	48.276	ENSHCOG00000007306	-	92	46.753
ENSHCOG00000017425	-	98	41.839	ENSHCOG00000004255	si:dkey-206d17.12	96	52.869
ENSHCOG00000017425	-	84	66.667	ENSHCOG00000008878	-	68	58.989

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000017425	-	98	62.955	ENSACIG00000005689	-	74	78.723	Amphilophus_citrinellus
ENSHCOG00000017425	-	76	61.184	ENSAPLG00000003874	ZC3H12B	99	74.828	Anas_platyrhynchos
ENSHCOG00000017425	-	91	64.000	ENSAMXG00000005320	-	52	67.241	Astyanax_mexicanus
ENSHCOG00000017425	-	76	59.091	ENSCSAG00000011955	-	66	73.182	Chlorocebus_sabaeus
ENSHCOG00000017425	-	76	61.379	ENSECAG00000020993	ZC3H12B	66	71.171	Equus_caballus
ENSHCOG00000017425	-	76	61.184	ENSFALG00000004293	ZC3H12B	69	74.205	Ficedula_albicollis
ENSHCOG00000017425	-	96	64.811	ENSFHEG00000014717	-	67	74.016	Fundulus_heteroclitus
ENSHCOG00000017425	-	87	72.121	ENSGAFG00000004701	-	52	71.850	Gambusia_affinis
ENSHCOG00000017425	-	96	63.203	ENSHBUG00000003376	-	86	78.322	Haplochromis_burtoni
ENSHCOG00000017425	-	91	72.093	ENSMALG00000016807	-	89	71.895	Monopterus_albus
ENSHCOG00000017425	-	76	60.690	ENSMUSG00000035045	Zc3h12b	66	88.571	Mus_musculus
ENSHCOG00000017425	-	89	71.429	ENSORLG00000009188	-	55	71.429	Oryzias_latipes
ENSHCOG00000017425	-	89	71.429	ENSORLG00020019033	-	83	74.262	Oryzias_latipes_hni
ENSHCOG00000017425	-	89	71.429	ENSORLG00015020619	-	88	74.262	Oryzias_latipes_hsok
ENSHCOG00000017425	-	89	73.469	ENSOMEG00000018642	-	62	73.469	Oryzias_melastigma
ENSHCOG00000017425	-	78	76.510	ENSPLAG00000011687	-	77	78.448	Poecilia_latipinna
ENSHCOG00000017425	-	97	66.197	ENSPNYG00000007151	-	84	78.322	Pundamilia_nyererei
ENSHCOG00000017425	-	76	69.655	ENSPNYG00000015874	-	78	83.254	Pundamilia_nyererei
ENSHCOG00000017425	-	77	72.297	ENSPNAG00000017483	-	51	70.752	Pygocentrus_nattereri
ENSHCOG00000017425	-	76	61.379	ENSRNOG00000011508	Zc3h12b	67	74.091	Rattus_norvegicus
ENSHCOG00000017425	-	77	62.500	ENSSDUG00000014078	zc3h12b	86	71.739	Seriola_dumerili
ENSHCOG00000017425	-	72	66.038	ENSTNIG00000015684	-	67	66.667	Tetraodon_nigroviridis
ENSHCOG00000017425	-	96	61.923	ENSXCOG00000007996	-	86	76.496	Xiphophorus_couchianus