EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000017557 (Gene tree)
Gene ID: 109517255
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine and arginine rich splicing factor 5
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 4832 bases
Position: chrKV880001.1:2353209-2358040
Accession: 109517255
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000026522	RRM_1	PF00076.22	1.6e-33	1	2
ENSHCOP00000026522	RRM_1	PF00076.22	1.6e-33	2	2
ENSHCOP00000026522	RRM_3	PF08777.11	4.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000021853	-	1373	XM_019872289	ENSHCOP00000026522	302 (aa)	XP_019727848	UPI00094EFB11

Gene Model

Click here to download ENSHCOG00000017557's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03040	Spliceosome	KEGG
hcq05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000017557's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000017557	srsf5a	61	30.508	ENSHCOG00000012571	rbm14b	91	30.508
ENSHCOG00000017557	srsf5a	85	33.460	ENSHCOG00000018918	srsf1a	66	42.135
ENSHCOG00000017557	srsf5a	67	34.928	ENSHCOG00000008016	-	65	37.079
ENSHCOG00000017557	srsf5a	61	69.681	ENSHCOG00000005592	srsf5b	64	69.681
ENSHCOG00000017557	srsf5a	60	62.295	ENSHCOG00000002740	srsf6a	56	60.440
ENSHCOG00000017557	srsf5a	62	63.441	ENSHCOG00000012540	srsf4	66	63.388

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000017557	srsf5a	100	76.129	ENSAPOG00000017395	srsf5a	62	89.785	Acanthochromis_polyacanthus
ENSHCOG00000017557	srsf5a	85	77.821	ENSACIG00000011892	srsf5a	96	85.075	Amphilophus_citrinellus
ENSHCOG00000017557	srsf5a	80	86.364	ENSAOCG00000014967	srsf5a	81	85.950	Amphiprion_ocellaris
ENSHCOG00000017557	srsf5a	80	86.364	ENSAPEG00000009297	srsf5a	81	85.950	Amphiprion_percula
ENSHCOG00000017557	srsf5a	62	90.909	ENSATEG00000000198	srsf5a	65	90.909	Anabas_testudineus
ENSHCOG00000017557	srsf5a	62	76.064	ENSAPLG00000002469	-	70	75.000	Anas_platyrhynchos
ENSHCOG00000017557	srsf5a	62	76.344	ENSACAG00000029015	-	68	75.401	Anolis_carolinensis
ENSHCOG00000017557	srsf5a	62	87.435	ENSACLG00000027166	srsf5a	65	87.958	Astatotilapia_calliptera
ENSHCOG00000017557	srsf5a	73	79.909	ENSAMXG00000030476	srsf5a	67	85.484	Astyanax_mexicanus
ENSHCOG00000017557	srsf5a	62	78.610	ENSCPBG00000021518	-	70	78.075	Chrysemys_picta_bellii
ENSHCOG00000017557	srsf5a	63	56.784	ENSCSAVG00000011376	-	78	58.673	Ciona_savignyi
ENSHCOG00000017557	srsf5a	62	89.637	ENSCSEG00000008109	srsf5a	62	87.565	Cynoglossus_semilaevis
ENSHCOG00000017557	srsf5a	61	80.423	ENSCVAG00000016982	srsf5a	97	78.358	Cyprinodon_variegatus
ENSHCOG00000017557	srsf5a	83	78.571	ENSDARG00000029818	srsf5a	100	80.000	Danio_rerio
ENSHCOG00000017557	srsf5a	62	82.902	ENSELUG00000020439	srsf5a	62	84.456	Esox_lucius
ENSHCOG00000017557	srsf5a	62	74.074	ENSFALG00000005098	-	64	75.806	Ficedula_albicollis
ENSHCOG00000017557	srsf5a	61	78.000	ENSFHEG00000003955	srsf5a	97	73.793	Fundulus_heteroclitus
ENSHCOG00000017557	srsf5a	62	87.634	ENSGMOG00000000869	srsf5a	94	86.022	Gadus_morhua
ENSHCOG00000017557	srsf5a	62	76.882	ENSGALG00000033259	SRSF5A	63	74.731	Gallus_gallus
ENSHCOG00000017557	srsf5a	62	75.269	ENSGAFG00000018237	srsf5a	54	75.269	Gambusia_affinis
ENSHCOG00000017557	srsf5a	62	78.610	ENSGAGG00000007312	-	70	78.075	Gopherus_agassizii
ENSHCOG00000017557	srsf5a	62	87.895	ENSHBUG00000014048	srsf5a	64	88.421	Haplochromis_burtoni
ENSHCOG00000017557	srsf5a	70	84.112	ENSIPUG00000003439	srsf5a	69	86.842	Ictalurus_punctatus
ENSHCOG00000017557	srsf5a	62	83.511	ENSKMAG00000014937	srsf5a	79	66.418	Kryptolebias_marmoratus
ENSHCOG00000017557	srsf5a	62	83.590	ENSLBEG00000017153	srsf5a	74	84.103	Labrus_bergylta
ENSHCOG00000017557	srsf5a	62	82.796	ENSLACG00000017874	-	70	81.720	Latimeria_chalumnae
ENSHCOG00000017557	srsf5a	62	86.022	ENSLOCG00000014075	srsf5a	61	86.022	Lepisosteus_oculatus
ENSHCOG00000017557	srsf5a	100	76.159	ENSMAMG00000000192	srsf5a	65	89.785	Mastacembelus_armatus
ENSHCOG00000017557	srsf5a	62	87.895	ENSMZEG00005010485	srsf5a	64	88.421	Maylandia_zebra
ENSHCOG00000017557	srsf5a	89	61.993	ENSMGAG00000011888	-	96	74.405	Meleagris_gallopavo
ENSHCOG00000017557	srsf5a	62	88.710	ENSMMOG00000009793	srsf5a	61	88.710	Mola_mola
ENSHCOG00000017557	srsf5a	62	84.409	ENSMALG00000021194	srsf5a	63	83.871	Monopterus_albus
ENSHCOG00000017557	srsf5a	62	88.360	ENSNBRG00000000771	srsf5a	64	88.889	Neolamprologus_brichardi
ENSHCOG00000017557	srsf5a	62	88.360	ENSONIG00000019583	srsf5a	64	88.889	Oreochromis_niloticus
ENSHCOG00000017557	srsf5a	62	88.830	ENSORLG00000009268	srsf5a	67	86.559	Oryzias_latipes
ENSHCOG00000017557	srsf5a	62	88.830	ENSORLG00020003281	srsf5	67	86.559	Oryzias_latipes_hni
ENSHCOG00000017557	srsf5a	62	89.362	ENSORLG00015023075	srsf5	67	86.559	Oryzias_latipes_hsok
ENSHCOG00000017557	srsf5a	62	87.634	ENSOMEG00000000628	srsf5a	66	87.634	Oryzias_melastigma
ENSHCOG00000017557	srsf5a	62	87.097	ENSPKIG00000002054	srsf5a	68	87.097	Paramormyrops_kingsleyae
ENSHCOG00000017557	srsf5a	62	78.075	ENSPSIG00000008238	-	69	77.540	Pelodiscus_sinensis
ENSHCOG00000017557	srsf5a	62	82.105	ENSPMGG00000020125	srsf5a	55	81.183	Periophthalmus_magnuspinnatus
ENSHCOG00000017557	srsf5a	62	83.770	ENSPFOG00000022993	srsf5a	60	83.770	Poecilia_formosa
ENSHCOG00000017557	srsf5a	61	83.684	ENSPLAG00000005508	srsf5a	59	83.684	Poecilia_latipinna
ENSHCOG00000017557	srsf5a	62	83.770	ENSPMEG00000016339	srsf5a	60	83.770	Poecilia_mexicana
ENSHCOG00000017557	srsf5a	62	83.333	ENSPREG00000018091	srsf5a	61	83.333	Poecilia_reticulata
ENSHCOG00000017557	srsf5a	62	87.895	ENSPNYG00000021245	srsf5a	64	88.421	Pundamilia_nyererei
ENSHCOG00000017557	srsf5a	62	84.946	ENSPNAG00000021333	srsf5a	66	83.871	Pygocentrus_nattereri
ENSHCOG00000017557	srsf5a	62	88.172	ENSSFOG00015008377	srsf5	66	88.172	Scleropages_formosus
ENSHCOG00000017557	srsf5a	62	85.000	ENSSMAG00000010899	srsf5a	66	85.000	Scophthalmus_maximus
ENSHCOG00000017557	srsf5a	62	89.785	ENSSDUG00000006103	srsf5a	63	89.247	Seriola_dumerili
ENSHCOG00000017557	srsf5a	62	90.323	ENSSLDG00000004146	srsf5a	63	89.785	Seriola_lalandi_dorsalis
ENSHCOG00000017557	srsf5a	62	73.118	ENSSPUG00000002052	-	68	73.262	Sphenodon_punctatus
ENSHCOG00000017557	srsf5a	80	84.711	ENSSPAG00000002821	srsf5a	63	89.785	Stegastes_partitus
ENSHCOG00000017557	srsf5a	62	76.882	ENSTGUG00000011492	-	68	75.806	Taeniopygia_guttata
ENSHCOG00000017557	srsf5a	62	84.896	ENSTRUG00000022908	srsf5a	65	85.417	Takifugu_rubripes
ENSHCOG00000017557	srsf5a	65	77.387	ENSXETG00000017937	srsf5a	72	80.851	Xenopus_tropicalis
ENSHCOG00000017557	srsf5a	93	73.310	ENSXCOG00000015338	srsf5a	77	82.305	Xiphophorus_couchianus
ENSHCOG00000017557	srsf5a	62	84.456	ENSXMAG00000012823	srsf5a	61	82.902	Xiphophorus_maculatus