EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000017604 (Gene tree)
Gene ID: 109529313
Gene Symbol: bms1
Alias: bms1l|im:7152071|wu:fb37d08
Full Name: BMS1%2C ribosome biogenesis factor
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 14853 bases
Position: chrKV880364.1:651956-666808
Accession: 109529313
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000026497	AARP2CN	PF08142.12	1.6e-31	1	1
ENSHCOP00000026488	AARP2CN	PF08142.12	1.7e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000021706	-	3546	XM_019892639	ENSHCOP00000026488	1181 (aa)	XP_019748198	-
ENSHCOT00000027594	-	3507	-	ENSHCOP00000026497	1168 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000017604's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000017604's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000017604	bms1	98	66.154	ENSG00000165733	BMS1	89	67.805	Homo_sapiens
ENSHCOG00000017604	bms1	88	76.945	ENSAPOG00000002296	bms1	99	77.945	Acanthochromis_polyacanthus
ENSHCOG00000017604	bms1	55	65.432	ENSAMEG00000016834	BMS1	89	67.370	Ailuropoda_melanoleuca
ENSHCOG00000017604	bms1	99	74.874	ENSACIG00000002588	bms1	99	75.417	Amphilophus_citrinellus
ENSHCOG00000017604	bms1	99	79.066	ENSAOCG00000018088	bms1	99	79.282	Amphiprion_ocellaris
ENSHCOG00000017604	bms1	99	78.702	ENSAPEG00000014673	bms1	99	79.305	Amphiprion_percula
ENSHCOG00000017604	bms1	99	78.383	ENSATEG00000023465	bms1	99	79.125	Anabas_testudineus
ENSHCOG00000017604	bms1	93	67.279	ENSAPLG00000003759	BMS1	88	70.599	Anas_platyrhynchos
ENSHCOG00000017604	bms1	99	66.927	ENSACAG00000004537	-	88	68.395	Anolis_carolinensis
ENSHCOG00000017604	bms1	96	66.925	ENSANAG00000023432	BMS1	89	66.938	Aotus_nancymaae
ENSHCOG00000017604	bms1	99	77.975	ENSACLG00000001294	bms1	99	78.075	Astatotilapia_calliptera
ENSHCOG00000017604	bms1	52	76.083	ENSAMXG00000011236	bms1	98	72.233	Astyanax_mexicanus
ENSHCOG00000017604	bms1	99	66.732	ENSBTAG00000012878	BMS1	89	67.695	Bos_taurus
ENSHCOG00000017604	bms1	86	53.535	WBGene00022021	Y61A9LA.10	98	50.217	Caenorhabditis_elegans
ENSHCOG00000017604	bms1	97	66.667	ENSCJAG00000021705	BMS1	89	67.264	Callithrix_jacchus
ENSHCOG00000017604	bms1	99	67.636	ENSCAFG00000007114	BMS1	89	67.097	Canis_familiaris
ENSHCOG00000017604	bms1	99	67.636	ENSCAFG00020025282	BMS1	89	67.097	Canis_lupus_dingo
ENSHCOG00000017604	bms1	98	66.472	ENSCHIG00000023251	BMS1	89	67.532	Capra_hircus
ENSHCOG00000017604	bms1	99	57.065	ENSCAPG00000008652	BMS1	89	65.341	Cavia_aperea
ENSHCOG00000017604	bms1	99	59.984	ENSCPOG00000000502	BMS1	89	66.667	Cavia_porcellus
ENSHCOG00000017604	bms1	98	56.369	ENSCCAG00000024969	-	88	57.912	Cebus_capucinus
ENSHCOG00000017604	bms1	98	66.219	ENSCATG00000030625	-	89	67.419	Cercocebus_atys
ENSHCOG00000017604	bms1	89	46.708	ENSCATG00000008695	-	80	57.650	Cercocebus_atys
ENSHCOG00000017604	bms1	96	66.731	ENSCLAG00000002446	BMS1	89	66.793	Chinchilla_lanigera
ENSHCOG00000017604	bms1	98	66.860	ENSCSAG00000011118	BMS1	89	67.480	Chlorocebus_sabaeus
ENSHCOG00000017604	bms1	99	64.839	ENSCHOG00000011055	BMS1	89	66.775	Choloepus_hoffmanni
ENSHCOG00000017604	bms1	97	67.685	ENSCPBG00000025581	BMS1	87	68.336	Chrysemys_picta_bellii
ENSHCOG00000017604	bms1	84	61.578	ENSCING00000003181	-	99	55.844	Ciona_intestinalis
ENSHCOG00000017604	bms1	74	53.052	ENSCSAVG00000004113	-	92	52.523	Ciona_savignyi
ENSHCOG00000017604	bms1	98	66.926	ENSCANG00000011609	BMS1	89	67.258	Colobus_angolensis_palliatus
ENSHCOG00000017604	bms1	99	60.938	ENSCGRG00001019461	Bms1	99	61.111	Cricetulus_griseus_chok1gshd
ENSHCOG00000017604	bms1	99	60.938	ENSCGRG00000009016	Bms1	99	61.111	Cricetulus_griseus_crigri
ENSHCOG00000017604	bms1	99	75.475	ENSCSEG00000002469	bms1	99	74.979	Cynoglossus_semilaevis
ENSHCOG00000017604	bms1	99	78.729	ENSCVAG00000008371	bms1	99	78.824	Cyprinodon_variegatus
ENSHCOG00000017604	bms1	99	71.102	ENSDARG00000054154	bms1	99	72.104	Danio_rerio
ENSHCOG00000017604	bms1	99	64.972	ENSDNOG00000015761	BMS1	89	67.585	Dasypus_novemcinctus
ENSHCOG00000017604	bms1	87	60.934	FBgn0036686	CG7728	99	48.059	Drosophila_melanogaster
ENSHCOG00000017604	bms1	83	64.854	ENSETEG00000009554	BMS1	78	64.672	Echinops_telfairi
ENSHCOG00000017604	bms1	99	60.392	ENSEASG00005006894	BMS1	89	67.590	Equus_asinus_asinus
ENSHCOG00000017604	bms1	99	60.642	ENSECAG00000001358	BMS1	89	67.427	Equus_caballus
ENSHCOG00000017604	bms1	99	70.612	ENSELUG00000001756	bms1	99	71.394	Esox_lucius
ENSHCOG00000017604	bms1	99	61.310	ENSFCAG00000011220	BMS1	89	67.264	Felis_catus
ENSHCOG00000017604	bms1	99	65.185	ENSFALG00000006882	BMS1	87	68.167	Ficedula_albicollis
ENSHCOG00000017604	bms1	99	60.218	ENSFDAG00000001422	BMS1	89	66.558	Fukomys_damarensis
ENSHCOG00000017604	bms1	99	79.304	ENSFHEG00000003367	bms1	99	79.275	Fundulus_heteroclitus
ENSHCOG00000017604	bms1	99	70.008	ENSGMOG00000000718	bms1	99	69.623	Gadus_morhua
ENSHCOG00000017604	bms1	99	67.366	ENSGALG00000002624	BMS1	88	68.608	Gallus_gallus
ENSHCOG00000017604	bms1	99	79.903	ENSGACG00000015334	bms1	89	79.903	Gasterosteus_aculeatus
ENSHCOG00000017604	bms1	97	67.700	ENSGAGG00000003467	BMS1	95	66.667	Gopherus_agassizii
ENSHCOG00000017604	bms1	99	77.965	ENSHBUG00000022628	bms1	99	78.122	Haplochromis_burtoni
ENSHCOG00000017604	bms1	99	60.063	ENSHGLG00000000477	BMS1	89	66.935	Heterocephalus_glaber_female
ENSHCOG00000017604	bms1	99	60.142	ENSHGLG00100002176	BMS1	89	66.935	Heterocephalus_glaber_male
ENSHCOG00000017604	bms1	100	69.396	ENSIPUG00000017855	bms1	99	69.451	Ictalurus_punctatus
ENSHCOG00000017604	bms1	98	66.862	ENSSTOG00000015063	BMS1	89	67.961	Ictidomys_tridecemlineatus
ENSHCOG00000017604	bms1	99	61.129	ENSJJAG00000017328	Bms1	89	67.317	Jaculus_jaculus
ENSHCOG00000017604	bms1	64	72.917	ENSKMAG00000021982	bms1	96	73.263	Kryptolebias_marmoratus
ENSHCOG00000017604	bms1	99	75.705	ENSLBEG00000028208	bms1	99	76.631	Labrus_bergylta
ENSHCOG00000017604	bms1	99	57.356	ENSLACG00000001600	BMS1	89	65.953	Latimeria_chalumnae
ENSHCOG00000017604	bms1	53	75.753	ENSLOCG00000012914	bms1	99	71.301	Lepisosteus_oculatus
ENSHCOG00000017604	bms1	99	64.241	ENSLAFG00000006250	BMS1	89	66.667	Loxodonta_africana
ENSHCOG00000017604	bms1	88	66.411	ENSMFAG00000037771	BMS1	98	67.041	Macaca_fascicularis
ENSHCOG00000017604	bms1	88	60.038	ENSMMUG00000007426	-	86	61.647	Macaca_mulatta
ENSHCOG00000017604	bms1	83	54.102	ENSMLEG00000029084	-	79	56.959	Mandrillus_leucophaeus
ENSHCOG00000017604	bms1	99	77.852	ENSMAMG00000020855	bms1	99	77.833	Mastacembelus_armatus
ENSHCOG00000017604	bms1	99	77.975	ENSMZEG00005005663	bms1	99	78.075	Maylandia_zebra
ENSHCOG00000017604	bms1	92	68.226	ENSMGAG00000001170	BMS1	87	68.608	Meleagris_gallopavo
ENSHCOG00000017604	bms1	99	60.924	ENSMAUG00000002195	Bms1	99	60.798	Mesocricetus_auratus
ENSHCOG00000017604	bms1	97	65.840	ENSMICG00000009977	BMS1	89	66.938	Microcebus_murinus
ENSHCOG00000017604	bms1	98	66.148	ENSMOCG00000002038	Bms1	89	66.452	Microtus_ochrogaster
ENSHCOG00000017604	bms1	99	78.682	ENSMMOG00000000977	bms1	99	78.287	Mola_mola
ENSHCOG00000017604	bms1	99	65.492	ENSMODG00000001177	BMS1	89	67.200	Monodelphis_domestica
ENSHCOG00000017604	bms1	99	78.081	ENSMALG00000009680	bms1	99	79.285	Monopterus_albus
ENSHCOG00000017604	bms1	83	60.634	MGP_CAROLIEiJ_G0028785	-	76	75.921	Mus_caroli
ENSHCOG00000017604	bms1	99	60.000	ENSMUSG00000030138	Bms1	90	66.071	Mus_musculus
ENSHCOG00000017604	bms1	95	66.469	MGP_PahariEiJ_G0022539	Bms1	90	66.613	Mus_pahari
ENSHCOG00000017604	bms1	99	59.704	MGP_SPRETEiJ_G0029816	Bms1	90	66.071	Mus_spretus
ENSHCOG00000017604	bms1	98	67.052	ENSMPUG00000017276	BMS1	89	67.537	Mustela_putorius_furo
ENSHCOG00000017604	bms1	99	60.186	ENSMLUG00000003260	BMS1	89	67.480	Myotis_lucifugus
ENSHCOG00000017604	bms1	99	57.752	ENSNGAG00000015258	Bms1	99	57.673	Nannospalax_galili
ENSHCOG00000017604	bms1	98	66.472	ENSNLEG00000015791	BMS1	89	65.858	Nomascus_leucogenys
ENSHCOG00000017604	bms1	87	74.940	ENSOPRG00000005195	BMS1	80	75.616	Ochotona_princeps
ENSHCOG00000017604	bms1	99	60.532	ENSODEG00000005554	BMS1	89	67.235	Octodon_degus
ENSHCOG00000017604	bms1	99	78.326	ENSONIG00000007227	bms1	99	78.392	Oreochromis_niloticus
ENSHCOG00000017604	bms1	99	66.731	ENSOANG00000000662	-	88	67.311	Ornithorhynchus_anatinus
ENSHCOG00000017604	bms1	96	67.261	ENSOCUG00000005354	BMS1	88	67.101	Oryctolagus_cuniculus
ENSHCOG00000017604	bms1	99	78.319	ENSORLG00000014655	bms1	99	78.505	Oryzias_latipes
ENSHCOG00000017604	bms1	52	82.190	ENSORLG00020016246	bms1	99	75.725	Oryzias_latipes_hni
ENSHCOG00000017604	bms1	52	81.699	ENSORLG00015014183	bms1	99	76.617	Oryzias_latipes_hsok
ENSHCOG00000017604	bms1	99	78.523	ENSOMEG00000015042	bms1	99	78.589	Oryzias_melastigma
ENSHCOG00000017604	bms1	98	66.286	ENSOGAG00000006511	BMS1	89	67.642	Otolemur_garnettii
ENSHCOG00000017604	bms1	98	65.957	ENSOARG00000003900	BMS1	89	67.695	Ovis_aries
ENSHCOG00000017604	bms1	98	66.538	ENSPPAG00000027837	BMS1	88	66.792	Pan_paniscus
ENSHCOG00000017604	bms1	99	61.250	ENSPPRG00000001311	BMS1	89	67.293	Panthera_pardus
ENSHCOG00000017604	bms1	99	60.296	ENSPTIG00000009652	BMS1	89	67.542	Panthera_tigris_altaica
ENSHCOG00000017604	bms1	98	66.538	ENSPTRG00000002441	BMS1	89	68.019	Pan_troglodytes
ENSHCOG00000017604	bms1	98	73.642	ENSPKIG00000008165	bms1	97	70.926	Paramormyrops_kingsleyae
ENSHCOG00000017604	bms1	96	66.796	ENSPSIG00000006481	BMS1	94	66.359	Pelodiscus_sinensis
ENSHCOG00000017604	bms1	55	51.915	ENSPEMG00000022467	Bms1	88	66.730	Peromyscus_maniculatus_bairdii
ENSHCOG00000017604	bms1	97	66.453	ENSPCIG00000001339	BMS1	87	72.676	Phascolarctos_cinereus
ENSHCOG00000017604	bms1	96	78.905	ENSPFOG00000015180	bms1	99	75.820	Poecilia_formosa
ENSHCOG00000017604	bms1	99	77.419	ENSPMEG00000023176	bms1	94	77.787	Poecilia_mexicana
ENSHCOG00000017604	bms1	99	77.106	ENSPREG00000002695	bms1	99	77.656	Poecilia_reticulata
ENSHCOG00000017604	bms1	55	66.603	ENSPPYG00000002836	-	82	66.855	Pongo_abelii
ENSHCOG00000017604	bms1	73	74.150	ENSPCAG00000014528	BMS1	76	65.392	Procavia_capensis
ENSHCOG00000017604	bms1	94	65.672	ENSPCOG00000023834	-	87	66.595	Propithecus_coquereli
ENSHCOG00000017604	bms1	99	63.722	ENSPVAG00000000725	BMS1	90	67.320	Pteropus_vampyrus
ENSHCOG00000017604	bms1	99	76.091	ENSPNYG00000018866	bms1	99	74.876	Pundamilia_nyererei
ENSHCOG00000017604	bms1	97	75.428	ENSPNAG00000000676	bms1	90	77.814	Pygocentrus_nattereri
ENSHCOG00000017604	bms1	79	66.602	ENSRNOG00000006576	Bms1	86	67.959	Rattus_norvegicus
ENSHCOG00000017604	bms1	99	64.231	ENSRROG00000040101	BMS1	89	66.829	Rhinopithecus_roxellana
ENSHCOG00000017604	bms1	96	67.524	ENSSBOG00000035778	BMS1	89	67.752	Saimiri_boliviensis_boliviensis
ENSHCOG00000017604	bms1	99	64.351	ENSSHAG00000005062	BMS1	88	66.129	Sarcophilus_harrisii
ENSHCOG00000017604	bms1	54	76.205	ENSSFOG00015022313	bms1	99	71.846	Scleropages_formosus
ENSHCOG00000017604	bms1	100	76.849	ENSSMAG00000019966	bms1	99	78.057	Scophthalmus_maximus
ENSHCOG00000017604	bms1	99	78.904	ENSSDUG00000016875	bms1	99	78.969	Seriola_dumerili
ENSHCOG00000017604	bms1	99	78.110	ENSSLDG00000015199	bms1	99	78.990	Seriola_lalandi_dorsalis
ENSHCOG00000017604	bms1	66	60.721	ENSSARG00000014407	BMS1	85	64.008	Sorex_araneus
ENSHCOG00000017604	bms1	99	68.599	ENSSPUG00000014454	BMS1	89	68.821	Sphenodon_punctatus
ENSHCOG00000017604	bms1	98	67.442	ENSSSCG00000010198	BMS1	89	68.130	Sus_scrofa
ENSHCOG00000017604	bms1	99	65.666	ENSTGUG00000006302	-	95	67.358	Taeniopygia_guttata
ENSHCOG00000017604	bms1	99	71.514	ENSTRUG00000008028	bms1	99	71.793	Takifugu_rubripes
ENSHCOG00000017604	bms1	99	72.186	ENSTNIG00000006216	bms1	89	73.231	Tetraodon_nigroviridis
ENSHCOG00000017604	bms1	66	67.677	ENSTBEG00000001673	-	63	68.136	Tupaia_belangeri
ENSHCOG00000017604	bms1	99	65.019	ENSTTRG00000007983	BMS1	88	67.752	Tursiops_truncatus
ENSHCOG00000017604	bms1	99	60.911	ENSUAMG00000023996	BMS1	89	67.700	Ursus_americanus
ENSHCOG00000017604	bms1	55	65.426	ENSUMAG00000016523	BMS1	89	67.374	Ursus_maritimus
ENSHCOG00000017604	bms1	78	72.931	ENSVPAG00000007477	BMS1	81	72.985	Vicugna_pacos
ENSHCOG00000017604	bms1	99	67.636	ENSVVUG00000021305	BMS1	91	67.419	Vulpes_vulpes
ENSHCOG00000017604	bms1	98	61.102	ENSXETG00000008158	bms1	92	64.717	Xenopus_tropicalis
ENSHCOG00000017604	bms1	99	76.331	ENSXCOG00000000506	bms1	96	89.163	Xiphophorus_couchianus
ENSHCOG00000017604	bms1	99	77.806	ENSXMAG00000014236	bms1	99	78.125	Xiphophorus_maculatus