EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000017669 (Gene tree)
Gene ID: 109518555
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 5918 bases
Position: chrKV880052.1:799290-805207
Accession: 109518555
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000014339	DND1_DSRM	PF14709.7	6e-25	1	1
ENSHCOP00000014339	RRM_1	PF00076.22	5.2e-38	1	3
ENSHCOP00000014339	RRM_1	PF00076.22	5.2e-38	2	3
ENSHCOP00000014339	RRM_1	PF00076.22	5.2e-38	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000021925	-	3511	XM_019874459	ENSHCOP00000014339	611 (aa)	XP_019730018	UPI00094E760A

Gene Model

Click here to download ENSHCOG00000017669's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000017669's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000017669	a1cf	90	49.283	ENSHCOG00000002074	rbm47	81	47.670
ENSHCOG00000017669	a1cf	51	49.518	ENSHCOG00000012998	rbm46	75	51.568

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000017669	a1cf	100	72.638	ENSG00000148584	A1CF	100	83.168	Homo_sapiens
ENSHCOG00000017669	a1cf	100	74.795	ENSAPOG00000008259	a1cf	100	73.376	Acanthochromis_polyacanthus
ENSHCOG00000017669	a1cf	100	71.941	ENSAMEG00000000523	A1CF	100	69.771	Ailuropoda_melanoleuca
ENSHCOG00000017669	a1cf	100	75.281	ENSACIG00000008632	a1cf	100	74.639	Amphilophus_citrinellus
ENSHCOG00000017669	a1cf	100	76.423	ENSAOCG00000023744	a1cf	93	84.257	Amphiprion_ocellaris
ENSHCOG00000017669	a1cf	100	77.073	ENSAPEG00000009537	a1cf	100	76.175	Amphiprion_percula
ENSHCOG00000017669	a1cf	100	76.367	ENSATEG00000013720	a1cf	100	74.598	Anabas_testudineus
ENSHCOG00000017669	a1cf	100	73.083	ENSAPLG00000002964	A1CF	95	72.241	Anas_platyrhynchos
ENSHCOG00000017669	a1cf	92	71.454	ENSACAG00000015269	A1CF	94	68.966	Anolis_carolinensis
ENSHCOG00000017669	a1cf	100	72.313	ENSANAG00000019974	A1CF	100	69.494	Aotus_nancymaae
ENSHCOG00000017669	a1cf	100	75.566	ENSACLG00000017428	a1cf	100	74.757	Astatotilapia_calliptera
ENSHCOG00000017669	a1cf	100	69.677	ENSAMXG00000018180	a1cf	100	67.097	Astyanax_mexicanus
ENSHCOG00000017669	a1cf	100	72.358	ENSBTAG00000021195	A1CF	100	72.389	Bos_taurus
ENSHCOG00000017669	a1cf	100	72.964	ENSCJAG00000005045	A1CF	100	70.147	Callithrix_jacchus
ENSHCOG00000017669	a1cf	100	71.895	ENSCAFG00000015581	A1CF	100	69.885	Canis_familiaris
ENSHCOG00000017669	a1cf	100	71.895	ENSCAFG00020026421	A1CF	98	75.896	Canis_lupus_dingo
ENSHCOG00000017669	a1cf	100	73.496	ENSCHIG00000020411	A1CF	100	70.358	Capra_hircus
ENSHCOG00000017669	a1cf	94	72.884	ENSTSYG00000001755	A1CF	100	69.031	Carlito_syrichta
ENSHCOG00000017669	a1cf	100	73.231	ENSCAPG00000017386	A1CF	90	72.843	Cavia_aperea
ENSHCOG00000017669	a1cf	100	72.476	ENSCPOG00000009807	A1CF	95	71.601	Cavia_porcellus
ENSHCOG00000017669	a1cf	100	72.920	ENSCCAG00000018168	A1CF	100	70.098	Cebus_capucinus
ENSHCOG00000017669	a1cf	100	71.941	ENSCATG00000043715	A1CF	99	71.012	Cercocebus_atys
ENSHCOG00000017669	a1cf	100	72.033	ENSCLAG00000010424	A1CF	95	71.134	Chinchilla_lanigera
ENSHCOG00000017669	a1cf	100	72.594	ENSCSAG00000007032	A1CF	100	69.935	Chlorocebus_sabaeus
ENSHCOG00000017669	a1cf	98	69.294	ENSCHOG00000009089	A1CF	94	68.889	Choloepus_hoffmanni
ENSHCOG00000017669	a1cf	100	73.083	ENSCPBG00000026464	A1CF	95	72.414	Chrysemys_picta_bellii
ENSHCOG00000017669	a1cf	100	72.757	ENSCANG00000038032	A1CF	100	70.098	Colobus_angolensis_palliatus
ENSHCOG00000017669	a1cf	100	72.195	ENSCGRG00001017413	A1cf	100	69.870	Cricetulus_griseus_chok1gshd
ENSHCOG00000017669	a1cf	100	72.195	ENSCGRG00000017332	A1cf	100	69.381	Cricetulus_griseus_crigri
ENSHCOG00000017669	a1cf	100	76.985	ENSCSEG00000002361	a1cf	100	74.878	Cynoglossus_semilaevis
ENSHCOG00000017669	a1cf	100	75.241	ENSCVAG00000010520	a1cf	100	73.473	Cyprinodon_variegatus
ENSHCOG00000017669	a1cf	100	73.899	ENSDARG00000002968	a1cf	93	74.472	Danio_rerio
ENSHCOG00000017669	a1cf	100	72.520	ENSDNOG00000002829	A1CF	100	69.707	Dasypus_novemcinctus
ENSHCOG00000017669	a1cf	80	81.884	ENSETEG00000012527	A1CF	73	83.333	Echinops_telfairi
ENSHCOG00000017669	a1cf	100	72.447	ENSEASG00005012924	A1CF	100	69.643	Equus_asinus_asinus
ENSHCOG00000017669	a1cf	100	72.123	ENSECAG00000010424	A1CF	100	69.318	Equus_caballus
ENSHCOG00000017669	a1cf	79	63.636	ENSEEUG00000000013	A1CF	100	61.570	Erinaceus_europaeus
ENSHCOG00000017669	a1cf	100	75.530	ENSELUG00000003159	a1cf	100	72.920	Esox_lucius
ENSHCOG00000017669	a1cf	100	71.778	ENSFCAG00000011179	A1CF	100	69.935	Felis_catus
ENSHCOG00000017669	a1cf	100	72.104	ENSFALG00000013183	A1CF	94	71.379	Ficedula_albicollis
ENSHCOG00000017669	a1cf	100	71.220	ENSFDAG00000019371	A1CF	95	70.619	Fukomys_damarensis
ENSHCOG00000017669	a1cf	100	69.132	ENSFHEG00000019652	a1cf	96	85.156	Fundulus_heteroclitus
ENSHCOG00000017669	a1cf	100	70.521	ENSGMOG00000018943	a1cf	100	69.218	Gadus_morhua
ENSHCOG00000017669	a1cf	96	73.639	ENSGALG00000003765	A1CF	92	72.613	Gallus_gallus
ENSHCOG00000017669	a1cf	100	69.903	ENSGAFG00000014868	a1cf	100	68.123	Gambusia_affinis
ENSHCOG00000017669	a1cf	100	76.175	ENSGACG00000010241	a1cf	100	74.716	Gasterosteus_aculeatus
ENSHCOG00000017669	a1cf	95	73.150	ENSGAGG00000016508	A1CF	91	72.080	Gopherus_agassizii
ENSHCOG00000017669	a1cf	100	72.638	ENSGGOG00000009670	A1CF	100	69.821	Gorilla_gorilla
ENSHCOG00000017669	a1cf	100	76.726	ENSHBUG00000021959	a1cf	100	75.441	Haplochromis_burtoni
ENSHCOG00000017669	a1cf	100	71.870	ENSHGLG00000008955	A1CF	95	71.134	Heterocephalus_glaber_female
ENSHCOG00000017669	a1cf	100	71.220	ENSHGLG00100000518	A1CF	95	70.447	Heterocephalus_glaber_male
ENSHCOG00000017669	a1cf	90	77.536	ENSIPUG00000010367	a1cf	99	75.000	Ictalurus_punctatus
ENSHCOG00000017669	a1cf	100	75.840	ENSKMAG00000006568	a1cf	100	74.404	Kryptolebias_marmoratus
ENSHCOG00000017669	a1cf	99	77.346	ENSLBEG00000020994	a1cf	94	77.119	Labrus_bergylta
ENSHCOG00000017669	a1cf	100	71.987	ENSLACG00000008061	A1CF	100	68.679	Latimeria_chalumnae
ENSHCOG00000017669	a1cf	100	75.325	ENSLOCG00000006302	a1cf	100	71.382	Lepisosteus_oculatus
ENSHCOG00000017669	a1cf	100	71.870	ENSLAFG00000015462	A1CF	100	70.358	Loxodonta_africana
ENSHCOG00000017669	a1cf	100	71.941	ENSMFAG00000035948	A1CF	99	71.012	Macaca_fascicularis
ENSHCOG00000017669	a1cf	100	71.941	ENSMMUG00000007077	A1CF	100	69.281	Macaca_mulatta
ENSHCOG00000017669	a1cf	100	71.778	ENSMNEG00000031454	A1CF	99	71.429	Macaca_nemestrina
ENSHCOG00000017669	a1cf	100	72.757	ENSMLEG00000037223	A1CF	100	70.098	Mandrillus_leucophaeus
ENSHCOG00000017669	a1cf	100	76.052	ENSMAMG00000010402	a1cf	100	75.243	Mastacembelus_armatus
ENSHCOG00000017669	a1cf	100	77.325	ENSMZEG00005013245	a1cf	100	75.530	Maylandia_zebra
ENSHCOG00000017669	a1cf	100	73.127	ENSMGAG00000001507	A1CF	95	72.117	Meleagris_gallopavo
ENSHCOG00000017669	a1cf	100	71.870	ENSMAUG00000007422	A1cf	100	69.218	Mesocricetus_auratus
ENSHCOG00000017669	a1cf	100	70.388	ENSMICG00000003377	A1CF	100	68.395	Microcebus_murinus
ENSHCOG00000017669	a1cf	100	72.683	ENSMOCG00000021536	A1cf	100	70.358	Microtus_ochrogaster
ENSHCOG00000017669	a1cf	100	66.613	ENSMMOG00000009422	a1cf	100	65.478	Mola_mola
ENSHCOG00000017669	a1cf	92	73.712	ENSMODG00000016478	A1CF	99	72.469	Monodelphis_domestica
ENSHCOG00000017669	a1cf	100	71.452	ENSMALG00000012992	a1cf	100	70.867	Monopterus_albus
ENSHCOG00000017669	a1cf	100	72.403	MGP_CAROLIEiJ_G0022873	A1cf	100	70.455	Mus_caroli
ENSHCOG00000017669	a1cf	100	72.403	ENSMUSG00000052595	A1cf	99	76.276	Mus_musculus
ENSHCOG00000017669	a1cf	100	72.447	MGP_PahariEiJ_G0014366	A1cf	100	69.805	Mus_pahari
ENSHCOG00000017669	a1cf	100	72.195	MGP_SPRETEiJ_G0023792	A1cf	100	70.244	Mus_spretus
ENSHCOG00000017669	a1cf	100	67.863	ENSMPUG00000016971	A1CF	100	65.033	Mustela_putorius_furo
ENSHCOG00000017669	a1cf	100	72.195	ENSMLUG00000016071	A1CF	100	69.593	Myotis_lucifugus
ENSHCOG00000017669	a1cf	100	72.358	ENSNGAG00000015136	A1cf	100	69.870	Nannospalax_galili
ENSHCOG00000017669	a1cf	100	77.207	ENSNBRG00000001712	a1cf	100	75.923	Neolamprologus_brichardi
ENSHCOG00000017669	a1cf	100	72.683	ENSNLEG00000012028	A1CF	100	70.033	Nomascus_leucogenys
ENSHCOG00000017669	a1cf	94	73.057	ENSMEUG00000015909	A1CF	94	71.978	Notamacropus_eugenii
ENSHCOG00000017669	a1cf	89	65.441	ENSOPRG00000010667	A1CF	100	63.251	Ochotona_princeps
ENSHCOG00000017669	a1cf	100	76.565	ENSONIG00000019105	a1cf	100	75.281	Oreochromis_niloticus
ENSHCOG00000017669	a1cf	79	71.753	ENSOANG00000007360	A1CF	99	69.691	Ornithorhynchus_anatinus
ENSHCOG00000017669	a1cf	100	70.779	ENSOCUG00000011587	A1CF	100	68.293	Oryctolagus_cuniculus
ENSHCOG00000017669	a1cf	100	73.139	ENSORLG00000013342	a1cf	100	70.874	Oryzias_latipes
ENSHCOG00000017669	a1cf	100	74.475	ENSORLG00020000586	a1cf	100	72.698	Oryzias_latipes_hni
ENSHCOG00000017669	a1cf	100	74.475	ENSORLG00015018569	a1cf	100	72.698	Oryzias_latipes_hsok
ENSHCOG00000017669	a1cf	100	74.798	ENSOMEG00000013531	a1cf	100	72.698	Oryzias_melastigma
ENSHCOG00000017669	a1cf	100	73.083	ENSOGAG00000012884	A1CF	100	70.752	Otolemur_garnettii
ENSHCOG00000017669	a1cf	100	73.008	ENSOARG00000013695	A1CF	100	69.870	Ovis_aries
ENSHCOG00000017669	a1cf	97	71.549	ENSPPAG00000028115	A1CF	99	74.609	Pan_paniscus
ENSHCOG00000017669	a1cf	100	72.594	ENSPPRG00000012180	A1CF	100	70.752	Panthera_pardus
ENSHCOG00000017669	a1cf	100	72.594	ENSPTIG00000021223	A1CF	100	70.752	Panthera_tigris_altaica
ENSHCOG00000017669	a1cf	100	72.638	ENSPTRG00000002508	A1CF	100	69.821	Pan_troglodytes
ENSHCOG00000017669	a1cf	100	71.941	ENSPANG00000021988	A1CF	99	71.012	Papio_anubis
ENSHCOG00000017669	a1cf	100	75.530	ENSPKIG00000025176	a1cf	100	73.246	Paramormyrops_kingsleyae
ENSHCOG00000017669	a1cf	100	72.594	ENSPSIG00000010318	A1CF	95	71.552	Pelodiscus_sinensis
ENSHCOG00000017669	a1cf	98	67.333	ENSPMGG00000013359	a1cf	89	70.696	Periophthalmus_magnuspinnatus
ENSHCOG00000017669	a1cf	100	72.520	ENSPEMG00000015021	A1cf	100	69.707	Peromyscus_maniculatus_bairdii
ENSHCOG00000017669	a1cf	100	72.431	ENSPCIG00000002175	A1CF	95	71.724	Phascolarctos_cinereus
ENSHCOG00000017669	a1cf	100	77.010	ENSPFOG00000007437	-	100	75.080	Poecilia_formosa
ENSHCOG00000017669	a1cf	100	77.010	ENSPFOG00000006683	a1cf	100	75.080	Poecilia_formosa
ENSHCOG00000017669	a1cf	100	76.045	ENSPLAG00000000026	a1cf	100	74.116	Poecilia_latipinna
ENSHCOG00000017669	a1cf	100	76.045	ENSPLAG00000001210	-	100	74.116	Poecilia_latipinna
ENSHCOG00000017669	a1cf	100	69.614	ENSPMEG00000015529	-	100	67.685	Poecilia_mexicana
ENSHCOG00000017669	a1cf	100	68.810	ENSPMEG00000000921	a1cf	100	66.881	Poecilia_mexicana
ENSHCOG00000017669	a1cf	100	76.367	ENSPREG00000016298	a1cf	100	74.437	Poecilia_reticulata
ENSHCOG00000017669	a1cf	100	71.707	ENSPPYG00000002819	A1CF	100	69.055	Pongo_abelii
ENSHCOG00000017669	a1cf	80	55.193	ENSPCAG00000006463	A1CF	62	61.183	Procavia_capensis
ENSHCOG00000017669	a1cf	100	71.753	ENSPCOG00000024172	A1CF	100	69.593	Propithecus_coquereli
ENSHCOG00000017669	a1cf	100	77.849	ENSPNYG00000017944	a1cf	100	76.565	Pundamilia_nyererei
ENSHCOG00000017669	a1cf	100	75.606	ENSPNAG00000007704	a1cf	100	73.506	Pygocentrus_nattereri
ENSHCOG00000017669	a1cf	100	71.753	ENSRNOG00000033195	A1cf	100	68.943	Rattus_norvegicus
ENSHCOG00000017669	a1cf	100	67.967	ENSRBIG00000042892	A1CF	100	66.983	Rhinopithecus_bieti
ENSHCOG00000017669	a1cf	100	72.757	ENSRROG00000041398	A1CF	100	70.098	Rhinopithecus_roxellana
ENSHCOG00000017669	a1cf	100	73.008	ENSSBOG00000021930	A1CF	100	70.195	Saimiri_boliviensis_boliviensis
ENSHCOG00000017669	a1cf	100	73.409	ENSSHAG00000005096	A1CF	95	72.241	Sarcophilus_harrisii
ENSHCOG00000017669	a1cf	100	75.243	ENSSFOG00015011774	a1cf	93	77.670	Scleropages_formosus
ENSHCOG00000017669	a1cf	100	75.955	ENSSMAG00000013271	a1cf	100	75.481	Scophthalmus_maximus
ENSHCOG00000017669	a1cf	100	77.760	ENSSDUG00000013930	a1cf	100	75.812	Seriola_dumerili
ENSHCOG00000017669	a1cf	100	71.104	ENSSLDG00000004290	a1cf	100	68.831	Seriola_lalandi_dorsalis
ENSHCOG00000017669	a1cf	95	63.356	ENSSARG00000005940	A1CF	95	61.750	Sorex_araneus
ENSHCOG00000017669	a1cf	95	72.089	ENSSPUG00000006797	A1CF	86	73.614	Sphenodon_punctatus
ENSHCOG00000017669	a1cf	100	73.659	ENSSSCG00000010431	A1CF	100	70.847	Sus_scrofa
ENSHCOG00000017669	a1cf	100	72.285	ENSTGUG00000005090	A1CF	95	71.575	Taeniopygia_guttata
ENSHCOG00000017669	a1cf	100	74.598	ENSTRUG00000001982	a1cf	100	72.830	Takifugu_rubripes
ENSHCOG00000017669	a1cf	100	74.359	ENSTNIG00000003580	a1cf	100	72.596	Tetraodon_nigroviridis
ENSHCOG00000017669	a1cf	95	68.322	ENSTTRG00000013190	A1CF	89	67.332	Tursiops_truncatus
ENSHCOG00000017669	a1cf	100	72.801	ENSUAMG00000020065	A1CF	100	69.281	Ursus_americanus
ENSHCOG00000017669	a1cf	100	72.964	ENSUMAG00000011162	A1CF	100	69.935	Ursus_maritimus
ENSHCOG00000017669	a1cf	87	68.577	ENSVPAG00000006130	A1CF	75	71.459	Vicugna_pacos
ENSHCOG00000017669	a1cf	100	71.732	ENSVVUG00000002504	A1CF	99	72.438	Vulpes_vulpes
ENSHCOG00000017669	a1cf	100	68.352	ENSXETG00000006611	a1cf	95	66.724	Xenopus_tropicalis
ENSHCOG00000017669	a1cf	100	76.861	ENSXCOG00000003302	a1cf	100	74.919	Xiphophorus_couchianus
ENSHCOG00000017669	a1cf	100	77.670	ENSXMAG00000016703	a1cf	100	75.728	Xiphophorus_maculatus