EuRBPDB

Description
Ensembl ID
ENSHCOG00000017877 (Gene tree)
Gene ID
109529312
Gene Symbol
trub1
Alias
zgc:195155
Full Name
TruB pseudouridine synthase family member 1
Gene Type
protein_coding
Species
Hippocampus_comes
Status
putative
Strand
Plus strand
Length
4996 bases
Position
chrKV880364.1:290688-295683
Accession
109529312
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein ID
Domain
Pfam ID
E-value
Domain number
Total number
ENSHCOP00000014461TruB_NPF01509.181.1e-4711
ENSHCOP00000014448TruB_NPF01509.181.4e-3511
Transcripts
Transcript ID
Name
Length
RefSeq ID
Protein ID
Length
RefSeq ID
UniportKB ID
ENSHCOT00000022078-732-ENSHCOP00000014448243 (aa)--
ENSHCOT00000022083-831XM_019892638ENSHCOP00000014461276 (aa)XP_019748197-
Gene Model
Protein-Protein Interaction (PPI)
Paralogs
Ensembl ID
Gene Symbol
Coverage
Identiy
Paralog
Gene Symbol
Coverage
Identiy
ENSHCOG00000017877trub17330.435ENSHCOG00000017748trub26132.020
Orthologs
Ensembl ID
Gene Symbol
Coverage
Identiy
Ortholog
Gene Symbol
Coverage
Identiy
Species
ENSHCOG00000017877trub18968.571ENSG00000165832TRUB17068.571Homo_sapiens
ENSHCOG00000017877trub18887.705ENSAPOG00000020565trub19884.015Acanthochromis_polyacanthus
ENSHCOG00000017877trub18967.206ENSAMEG00000014931TRUB17067.206Ailuropoda_melanoleuca
ENSHCOG00000017877trub19781.513ENSACIG00000003060trub18981.513Amphilophus_citrinellus
ENSHCOG00000017877trub18887.295ENSAOCG00000017188trub19883.643Amphiprion_ocellaris
ENSHCOG00000017877trub19485.824ENSAPEG00000015209trub19884.015Amphiprion_percula
ENSHCOG00000017877trub18986.939ENSATEG00000023291trub18886.939Anabas_testudineus
ENSHCOG00000017877trub18869.262ENSAPLG00000006808TRUB18769.262Anas_platyrhynchos
ENSHCOG00000017877trub18967.347ENSACAG00000009282TRUB18867.347Anolis_carolinensis
ENSHCOG00000017877trub18968.163ENSANAG00000022870TRUB17068.163Aotus_nancymaae
ENSHCOG00000017877trub19684.848ENSACLG00000000823trub19584.848Astatotilapia_calliptera
ENSHCOG00000017877trub19077.510ENSAMXG00000015845trub18377.510Astyanax_mexicanus
ENSHCOG00000017877trub18968.980ENSBTAG00000012955TRUB17068.980Bos_taurus
ENSHCOG00000017877trub18968.163ENSCJAG00000047815TRUB17068.163Callithrix_jacchus
ENSHCOG00000017877trub18968.571ENSCAFG00000011688TRUB17068.571Canis_familiaris
ENSHCOG00000017877trub18968.571ENSCAFG00020013237TRUB17068.571Canis_lupus_dingo
ENSHCOG00000017877trub18968.571ENSCHIG00000020884TRUB17368.571Capra_hircus
ENSHCOG00000017877trub18966.939ENSTSYG00000000446TRUB17066.939Carlito_syrichta
ENSHCOG00000017877trub17660.190ENSCAPG00000017088TRUB18260.190Cavia_aperea
ENSHCOG00000017877trub17064.062ENSCPOG00000040236-7764.062Cavia_porcellus
ENSHCOG00000017877trub17163.077ENSCPOG00000030129-7563.077Cavia_porcellus
ENSHCOG00000017877trub18968.163ENSCCAG00000028842TRUB17068.163Cebus_capucinus
ENSHCOG00000017877trub18968.163ENSCATG00000033431TRUB17068.163Cercocebus_atys
ENSHCOG00000017877trub17162.564ENSCLAG00000008664TRUB18062.564Chinchilla_lanigera
ENSHCOG00000017877trub18968.163ENSCSAG00000004891TRUB17068.163Chlorocebus_sabaeus
ENSHCOG00000017877trub18860.494ENSCHOG00000011931TRUB17060.494Choloepus_hoffmanni
ENSHCOG00000017877trub18971.020ENSCPBG00000003051TRUB18471.020Chrysemys_picta_bellii
ENSHCOG00000017877trub18968.163ENSCANG00000029445TRUB17068.163Colobus_angolensis_palliatus
ENSHCOG00000017877trub18956.977ENSCGRG00001010322-7156.604Cricetulus_griseus_chok1gshd
ENSHCOG00000017877trub18064.224ENSCGRG00001016772-7864.103Cricetulus_griseus_chok1gshd
ENSHCOG00000017877trub18963.953ENSCGRG00000010806Trub18163.774Cricetulus_griseus_crigri
ENSHCOG00000017877trub19580.077ENSCSEG00000011261trub18480.077Cynoglossus_semilaevis
ENSHCOG00000017877trub19278.431ENSCVAG00000008791trub17878.431Cyprinodon_variegatus
ENSHCOG00000017877trub19674.532ENSDARG00000053805trub19982.353Danio_rerio
ENSHCOG00000017877trub18966.122ENSDNOG00000001069TRUB17066.122Dasypus_novemcinctus
ENSHCOG00000017877trub18667.227ENSDORG00000010431Trub17166.939Dipodomys_ordii
ENSHCOG00000017877trub16565.693ENSETEG00000009183TRUB15462.000Echinops_telfairi
ENSHCOG00000017877trub18966.939ENSEASG00005014739TRUB17066.939Equus_asinus_asinus
ENSHCOG00000017877trub18966.939ENSECAG00000007177TRUB17066.939Equus_caballus
ENSHCOG00000017877trub18959.592ENSEEUG00000013993TRUB17257.752Erinaceus_europaeus
ENSHCOG00000017877trub19976.190ENSELUG00000000502trub19576.190Esox_lucius
ENSHCOG00000017877trub19366.926ENSFCAG00000031927TRUB17466.926Felis_catus
ENSHCOG00000017877trub17867.907ENSFALG00000002232TRUB18367.907Ficedula_albicollis
ENSHCOG00000017877trub17164.103ENSFDAG00000008140TRUB18064.103Fukomys_damarensis
ENSHCOG00000017877trub19779.926ENSFHEG00000004016trub19279.926Fundulus_heteroclitus
ENSHCOG00000017877trub18967.611ENSGALG00000009091TRUB18767.611Gallus_gallus
ENSHCOG00000017877trub19281.176ENSGAFG00000009193trub18980.000Gambusia_affinis
ENSHCOG00000017877trub17484.729ENSGACG00000015387trub19984.729Gasterosteus_aculeatus
ENSHCOG00000017877trub19369.261ENSGAGG00000009758TRUB17369.261Gopherus_agassizii
ENSHCOG00000017877trub18968.571ENSGGOG00000004583TRUB17068.571Gorilla_gorilla
ENSHCOG00000017877trub19683.835ENSHBUG00000016787trub19683.835Haplochromis_burtoni
ENSHCOG00000017877trub19762.687ENSHGLG00000015314TRUB17662.687Heterocephalus_glaber_female
ENSHCOG00000017877trub17162.564ENSHGLG00100009183TRUB18262.564Heterocephalus_glaber_male
ENSHCOG00000017877trub19274.704ENSIPUG00000017559trub18974.704Ictalurus_punctatus
ENSHCOG00000017877trub18967.755ENSSTOG00000003641TRUB17367.755Ictidomys_tridecemlineatus
ENSHCOG00000017877trub18967.347ENSJJAG00000011800Trub17267.347Jaculus_jaculus
ENSHCOG00000017877trub19680.451ENSKMAG00000006232trub19680.451Kryptolebias_marmoratus
ENSHCOG00000017877trub19584.906ENSLBEG00000026722trub19384.906Labrus_bergylta
ENSHCOG00000017877trub19370.817ENSLACG00000014885TRUB18670.817Latimeria_chalumnae
ENSHCOG00000017877trub19474.903ENSLOCG00000012979trub18874.903Lepisosteus_oculatus
ENSHCOG00000017877trub19366.023ENSLAFG00000015452TRUB17466.154Loxodonta_africana
ENSHCOG00000017877trub18968.163ENSMFAG00000031767TRUB17068.163Macaca_fascicularis
ENSHCOG00000017877trub18968.163ENSMMUG00000001902TRUB17068.163Macaca_mulatta
ENSHCOG00000017877trub18962.857ENSMNEG00000044646TRUB16963.265Macaca_nemestrina
ENSHCOG00000017877trub18968.163ENSMLEG00000042655TRUB17068.163Mandrillus_leucophaeus
ENSHCOG00000017877trub19684.848ENSMZEG00005024095trub19584.848Maylandia_zebra
ENSHCOG00000017877trub18968.421ENSMGAG00000011135TRUB18568.421Meleagris_gallopavo
ENSHCOG00000017877trub18962.016ENSMAUG00000011101Trub17861.887Mesocricetus_auratus
ENSHCOG00000017877trub18968.163ENSMICG00000016324TRUB17068.163Microcebus_murinus
ENSHCOG00000017877trub18767.364ENSMOCG00000017759Trub17467.073Microtus_ochrogaster
ENSHCOG00000017877trub18868.443ENSMODG00000009676TRUB17165.637Monodelphis_domestica
ENSHCOG00000017877trub18766.390MGP_CAROLIEiJ_G0023100Trub17665.775Mus_caroli
ENSHCOG00000017877trub18765.560ENSMUSG00000025086Trub17664.706Mus_musculus
ENSHCOG00000017877trub18965.714MGP_PahariEiJ_G0014588Trub17265.714Mus_pahari
ENSHCOG00000017877trub18765.560MGP_SPRETEiJ_G0024021Trub17664.706Mus_spretus
ENSHCOG00000017877trub18968.571ENSMPUG00000003556TRUB17068.571Mustela_putorius_furo
ENSHCOG00000017877trub18966.939ENSMLUG00000017686TRUB17266.939Myotis_lucifugus
ENSHCOG00000017877trub19365.234ENSNGAG00000018682Trub17365.234Nannospalax_galili
ENSHCOG00000017877trub19286.561ENSNBRG00000023393trub19086.561Neolamprologus_brichardi
ENSHCOG00000017877trub18968.571ENSNLEG00000016345TRUB17068.571Nomascus_leucogenys
ENSHCOG00000017877trub17369.652ENSMEUG00000006603TRUB18066.047Notamacropus_eugenii
ENSHCOG00000017877trub18967.755ENSOPRG00000009371TRUB17167.755Ochotona_princeps
ENSHCOG00000017877trub18965.714ENSODEG00000010854TRUB17065.714Octodon_degus
ENSHCOG00000017877trub19783.026ENSONIG00000007249trub19883.643Oreochromis_niloticus
ENSHCOG00000017877trub18966.397ENSOANG00000001556TRUB18465.234Ornithorhynchus_anatinus
ENSHCOG00000017877trub19364.591ENSOCUG00000009456TRUB17464.591Oryctolagus_cuniculus
ENSHCOG00000017877trub19478.030ENSORLG00000029719trub110076.344Oryzias_latipes
ENSHCOG00000017877trub19478.030ENSORLG00020016767trub19976.344Oryzias_latipes_hni
ENSHCOG00000017877trub19180.400ENSORLG00015014728trub19578.491Oryzias_latipes_hsok
ENSHCOG00000017877trub19478.927ENSOMEG00000014556trub19278.927Oryzias_melastigma
ENSHCOG00000017877trub18968.163ENSOGAG00000015895TRUB17068.163Otolemur_garnettii
ENSHCOG00000017877trub18967.063ENSOARG00000015591TRUB17267.063Ovis_aries
ENSHCOG00000017877trub18968.571ENSPPAG00000043645TRUB17068.571Pan_paniscus
ENSHCOG00000017877trub19366.537ENSPPRG00000007096TRUB17466.537Panthera_pardus
ENSHCOG00000017877trub19366.537ENSPTIG00000006378TRUB17466.537Panthera_tigris_altaica
ENSHCOG00000017877trub18968.571ENSPTRG00000002964TRUB17068.571Pan_troglodytes
ENSHCOG00000017877trub18968.163ENSPANG00000020712TRUB17068.163Papio_anubis
ENSHCOG00000017877trub17472.626ENSPKIG00000003852trub17772.626Paramormyrops_kingsleyae
ENSHCOG00000017877trub18971.545ENSPSIG00000012877TRUB18471.545Pelodiscus_sinensis
ENSHCOG00000017877trub19675.849ENSPMGG00000000075trub19178.346Periophthalmus_magnuspinnatus
ENSHCOG00000017877trub19366.016ENSPEMG00000011156Trub17267.755Peromyscus_maniculatus_bairdii
ENSHCOG00000017877trub18868.443ENSPCIG00000009729TRUB17065.504Phascolarctos_cinereus
ENSHCOG00000017877trub19979.121ENSPFOG00000009950trub19979.121Poecilia_formosa
ENSHCOG00000017877trub110078.777ENSPLAG00000013855trub19778.777Poecilia_latipinna
ENSHCOG00000017877trub110078.777ENSPMEG00000009064trub110078.777Poecilia_mexicana
ENSHCOG00000017877trub110079.137ENSPREG00000003343trub110079.137Poecilia_reticulata
ENSHCOG00000017877trub18968.163ENSPPYG00000002676TRUB17068.163Pongo_abelii
ENSHCOG00000017877trub18961.633ENSPCAG00000008427TRUB17061.633Procavia_capensis
ENSHCOG00000017877trub18962.857ENSPCOG00000024360TRUB16862.041Propithecus_coquereli
ENSHCOG00000017877trub17369.307ENSPVAG00000007575TRUB17769.307Pteropus_vampyrus
ENSHCOG00000017877trub19684.470ENSPNYG00000018614trub19584.470Pundamilia_nyererei
ENSHCOG00000017877trub19176.126ENSPNAG00000006881trub18376.126Pygocentrus_nattereri
ENSHCOG00000017877trub18965.306ENSRNOG00000017321Trub17265.306Rattus_norvegicus
ENSHCOG00000017877trub18958.704ENSRBIG00000033423TRUB16858.704Rhinopithecus_bieti
ENSHCOG00000017877trub18968.163ENSRROG00000033902TRUB17068.163Rhinopithecus_roxellana
ENSHCOG00000017877trub18968.163ENSSBOG00000024237TRUB17068.163Saimiri_boliviensis_boliviensis
ENSHCOG00000017877trub17768.372ENSSHAG00000009346TRUB17268.372Sarcophilus_harrisii
ENSHCOG00000017877trub19672.662ENSSFOG00015022124trub19572.662Scleropages_formosus
ENSHCOG00000017877trub19587.170ENSSMAG00000001020trub19487.170Scophthalmus_maximus
ENSHCOG00000017877trub19982.246ENSSDUG00000016414trub19982.545Seriola_dumerili
ENSHCOG00000017877trub19784.387ENSSLDG00000015486trub19784.387Seriola_lalandi_dorsalis
ENSHCOG00000017877trub19070.683ENSSPUG00000001642TRUB18670.683Sphenodon_punctatus
ENSHCOG00000017877trub110082.014ENSSPAG00000001217trub19982.545Stegastes_partitus
ENSHCOG00000017877trub18966.531ENSSSCG00000010653TRUB17166.531Sus_scrofa
ENSHCOG00000017877trub18869.262ENSTGUG00000010971TRUB19067.194Taeniopygia_guttata
ENSHCOG00000017877trub17657.820ENSTBEG00000002880TRUB18357.820Tupaia_belangeri
ENSHCOG00000017877trub17368.812ENSTTRG00000005767TRUB17768.812Tursiops_truncatus
ENSHCOG00000017877trub18968.571ENSUAMG00000024876TRUB17068.571Ursus_americanus
ENSHCOG00000017877trub18968.571ENSUMAG00000002411TRUB17368.571Ursus_maritimus
ENSHCOG00000017877trub18968.571ENSVPAG00000005507TRUB17068.571Vicugna_pacos
ENSHCOG00000017877trub18968.571ENSVVUG00000010085TRUB15968.571Vulpes_vulpes
ENSHCOG00000017877trub18967.347ENSXETG00000023828trub18867.347Xenopus_tropicalis
ENSHCOG00000017877trub19182.540ENSXCOG00000017847trub18982.540Xiphophorus_couchianus
ENSHCOG00000017877trub19979.562ENSXMAG00000014701trub19979.562Xiphophorus_maculatus