EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000017907 (Gene tree)
Gene ID: 109527987
Gene Symbol: vars2
Alias: si:ch211-152p11.2
Full Name: valine--tRNA ligase%2C mitochondrial-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 21215 bases
Position: chrKV880315.1:1209895-1231109
Accession: 109527987
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000014397	Anticodon_1	PF08264.13	1.1e-35	1	1
ENSHCOP00000014365	Anticodon_1	PF08264.13	1.2e-35	1	1
ENSHCOP00000014397	tRNA-synt_1	PF00133.22	2.3e-123	1	1
ENSHCOP00000014365	tRNA-synt_1	PF00133.22	1.1e-116	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000022006	-	2256	XM_019890235	ENSHCOP00000014397	751 (aa)	XP_019745794	-
ENSHCOT00000021965	-	2334	-	ENSHCOP00000014365	777 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000017907's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000017907's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000017907	vars2	99	44.652	ENSHCOG00000012198	vars	61	43.931

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000017907	vars2	99	77.955	ENSAPOG00000007396	vars2	70	77.955	Acanthochromis_polyacanthus
ENSHCOG00000017907	vars2	94	51.831	ENSAMEG00000012997	VARS2	66	49.393	Ailuropoda_melanoleuca
ENSHCOG00000017907	vars2	97	78.308	ENSACIG00000004344	vars2	69	78.308	Amphilophus_citrinellus
ENSHCOG00000017907	vars2	99	77.556	ENSAOCG00000000476	vars2	70	77.556	Amphiprion_ocellaris
ENSHCOG00000017907	vars2	99	77.424	ENSAPEG00000008646	vars2	68	77.424	Amphiprion_percula
ENSHCOG00000017907	vars2	99	79.786	ENSATEG00000012291	vars2	69	79.786	Anabas_testudineus
ENSHCOG00000017907	vars2	95	51.796	ENSACAG00000022093	VARS2	68	49.668	Anolis_carolinensis
ENSHCOG00000017907	vars2	94	51.058	ENSANAG00000038018	VARS2	68	48.452	Aotus_nancymaae
ENSHCOG00000017907	vars2	97	76.119	ENSACLG00000018673	vars2	69	76.119	Astatotilapia_calliptera
ENSHCOG00000017907	vars2	97	69.074	ENSAMXG00000017773	vars2	67	72.182	Astyanax_mexicanus
ENSHCOG00000017907	vars2	94	52.180	ENSBTAG00000010698	VARS2	69	49.800	Bos_taurus
ENSHCOG00000017907	vars2	94	50.845	ENSCJAG00000019826	VARS2	69	48.865	Callithrix_jacchus
ENSHCOG00000017907	vars2	94	52.550	ENSCAFG00000000454	VARS2	68	50.000	Canis_familiaris
ENSHCOG00000017907	vars2	81	57.496	ENSCAFG00020019387	VARS2	62	56.905	Canis_lupus_dingo
ENSHCOG00000017907	vars2	94	51.408	ENSCHIG00000007847	VARS2	69	49.535	Capra_hircus
ENSHCOG00000017907	vars2	94	52.113	ENSTSYG00000009904	VARS2	69	49.733	Carlito_syrichta
ENSHCOG00000017907	vars2	94	51.058	ENSCAPG00000017770	VARS2	77	49.187	Cavia_aperea
ENSHCOG00000017907	vars2	94	50.776	ENSCPOG00000021834	VARS2	68	48.928	Cavia_porcellus
ENSHCOG00000017907	vars2	94	51.268	ENSCCAG00000037907	VARS2	68	49.059	Cebus_capucinus
ENSHCOG00000017907	vars2	95	51.821	ENSCATG00000032554	VARS2	69	49.402	Cercocebus_atys
ENSHCOG00000017907	vars2	94	50.710	ENSCLAG00000002889	VARS2	69	48.128	Chinchilla_lanigera
ENSHCOG00000017907	vars2	94	51.972	ENSCSAG00000008327	VARS2	69	49.535	Chlorocebus_sabaeus
ENSHCOG00000017907	vars2	97	53.352	ENSCPBG00000021502	VARS2	71	53.352	Chrysemys_picta_bellii
ENSHCOG00000017907	vars2	94	51.408	ENSCANG00000014991	VARS2	68	48.871	Colobus_angolensis_palliatus
ENSHCOG00000017907	vars2	99	50.335	ENSCGRG00001021535	Vars2	70	49.478	Cricetulus_griseus_chok1gshd
ENSHCOG00000017907	vars2	99	50.335	ENSCGRG00000014112	Vars2	70	49.478	Cricetulus_griseus_crigri
ENSHCOG00000017907	vars2	80	85.915	ENSCSEG00000015432	vars2	60	85.915	Cynoglossus_semilaevis
ENSHCOG00000017907	vars2	90	77.226	ENSCVAG00000017765	vars2	94	77.226	Cyprinodon_variegatus
ENSHCOG00000017907	vars2	99	68.598	ENSDARG00000056717	vars2	70	68.598	Danio_rerio
ENSHCOG00000017907	vars2	94	51.622	ENSDORG00000008516	Vars2	81	49.264	Dipodomys_ordii
ENSHCOG00000017907	vars2	91	44.541	ENSETEG00000014844	VARS2	67	43.228	Echinops_telfairi
ENSHCOG00000017907	vars2	95	51.329	ENSEASG00005019997	VARS2	64	56.281	Equus_asinus_asinus
ENSHCOG00000017907	vars2	94	52.321	ENSECAG00000018202	VARS2	68	50.202	Equus_caballus
ENSHCOG00000017907	vars2	98	68.568	ENSELUG00000017824	vars2	69	68.568	Esox_lucius
ENSHCOG00000017907	vars2	94	53.116	ENSFCAG00000010531	VARS2	68	50.607	Felis_catus
ENSHCOG00000017907	vars2	94	50.845	ENSFDAG00000017216	VARS2	68	48.853	Fukomys_damarensis
ENSHCOG00000017907	vars2	91	70.972	ENSFHEG00000013932	vars2	66	70.972	Fundulus_heteroclitus
ENSHCOG00000017907	vars2	95	68.289	ENSGMOG00000018960	vars2	73	68.289	Gadus_morhua
ENSHCOG00000017907	vars2	99	75.100	ENSGAFG00000004737	vars2	80	75.100	Gambusia_affinis
ENSHCOG00000017907	vars2	96	77.317	ENSGACG00000001464	vars2	72	77.317	Gasterosteus_aculeatus
ENSHCOG00000017907	vars2	98	53.992	ENSGAGG00000011652	VARS2	73	53.992	Gopherus_agassizii
ENSHCOG00000017907	vars2	94	51.268	ENSGGOG00000014587	VARS2	69	48.738	Gorilla_gorilla
ENSHCOG00000017907	vars2	97	75.102	ENSHBUG00000002448	vars2	70	75.102	Haplochromis_burtoni
ENSHCOG00000017907	vars2	94	49.929	ENSHGLG00000012886	VARS2	66	48.327	Heterocephalus_glaber_female
ENSHCOG00000017907	vars2	94	49.859	ENSHGLG00100016535	VARS2	69	48.262	Heterocephalus_glaber_male
ENSHCOG00000017907	vars2	97	69.672	ENSIPUG00000015573	Vars2	68	69.672	Ictalurus_punctatus
ENSHCOG00000017907	vars2	95	50.980	ENSSTOG00000009924	VARS2	70	48.105	Ictidomys_tridecemlineatus
ENSHCOG00000017907	vars2	99	50.602	ENSJJAG00000011144	Vars2	68	50.736	Jaculus_jaculus
ENSHCOG00000017907	vars2	98	73.056	ENSKMAG00000001393	vars2	68	73.315	Kryptolebias_marmoratus
ENSHCOG00000017907	vars2	97	75.782	ENSLBEG00000011949	vars2	69	75.782	Labrus_bergylta
ENSHCOG00000017907	vars2	97	54.150	ENSLACG00000001576	-	74	51.488	Latimeria_chalumnae
ENSHCOG00000017907	vars2	94	51.127	ENSLAFG00000015183	VARS2	68	49.057	Loxodonta_africana
ENSHCOG00000017907	vars2	94	51.831	ENSMFAG00000042367	VARS2	69	49.402	Macaca_fascicularis
ENSHCOG00000017907	vars2	94	51.972	ENSMMUG00000018609	VARS2	69	49.535	Macaca_mulatta
ENSHCOG00000017907	vars2	94	52.254	ENSMNEG00000043163	VARS2	69	49.668	Macaca_nemestrina
ENSHCOG00000017907	vars2	95	51.821	ENSMLEG00000041728	VARS2	67	49.402	Mandrillus_leucophaeus
ENSHCOG00000017907	vars2	99	75.401	ENSMAMG00000020339	vars2	68	76.119	Mastacembelus_armatus
ENSHCOG00000017907	vars2	97	75.984	ENSMZEG00005017669	vars2	69	75.984	Maylandia_zebra
ENSHCOG00000017907	vars2	56	50.000	ENSMGAG00000008005	-	99	50.119	Meleagris_gallopavo
ENSHCOG00000017907	vars2	99	50.602	ENSMAUG00000018946	Vars2	68	50.602	Mesocricetus_auratus
ENSHCOG00000017907	vars2	76	56.969	ENSMICG00000005365	VARS2	63	56.969	Microcebus_murinus
ENSHCOG00000017907	vars2	84	59.677	ENSMOCG00000014607	Vars2	63	59.677	Microtus_ochrogaster
ENSHCOG00000017907	vars2	99	73.656	ENSMMOG00000012122	vars2	70	73.656	Mola_mola
ENSHCOG00000017907	vars2	94	52.039	ENSMODG00000015848	VARS2	68	49.801	Monodelphis_domestica
ENSHCOG00000017907	vars2	98	76.223	ENSMALG00000009217	vars2	73	76.223	Monopterus_albus
ENSHCOG00000017907	vars2	94	52.750	MGP_CAROLIEiJ_G0021529	Vars2	97	55.575	Mus_caroli
ENSHCOG00000017907	vars2	94	52.468	ENSMUSG00000038838	Vars2	98	55.363	Mus_musculus
ENSHCOG00000017907	vars2	94	52.045	MGP_PahariEiJ_G0020523	Vars2	93	56.703	Mus_pahari
ENSHCOG00000017907	vars2	94	52.327	MGP_SPRETEiJ_G0022436	Vars2	97	55.226	Mus_spretus
ENSHCOG00000017907	vars2	94	52.975	ENSMPUG00000011643	VARS2	68	50.538	Mustela_putorius_furo
ENSHCOG00000017907	vars2	94	51.685	ENSMLUG00000002356	VARS2	63	51.685	Myotis_lucifugus
ENSHCOG00000017907	vars2	94	52.113	ENSNGAG00000020607	Vars2	67	52.113	Nannospalax_galili
ENSHCOG00000017907	vars2	97	49.658	ENSNLEG00000005625	VARS2	66	49.795	Nomascus_leucogenys
ENSHCOG00000017907	vars2	81	53.788	ENSMEUG00000014475	VARS2	67	52.658	Notamacropus_eugenii
ENSHCOG00000017907	vars2	94	48.798	ENSOPRG00000000682	VARS2	69	46.917	Ochotona_princeps
ENSHCOG00000017907	vars2	94	50.141	ENSODEG00000017965	VARS2	69	48.327	Octodon_degus
ENSHCOG00000017907	vars2	97	48.725	ENSONIG00000004734	vars2	73	48.725	Oreochromis_niloticus
ENSHCOG00000017907	vars2	94	45.084	ENSOANG00000000398	-	85	45.989	Ornithorhynchus_anatinus
ENSHCOG00000017907	vars2	97	73.469	ENSORLG00000010632	vars2	67	73.469	Oryzias_latipes
ENSHCOG00000017907	vars2	97	73.061	ENSORLG00020018584	vars2	67	73.061	Oryzias_latipes_hni
ENSHCOG00000017907	vars2	97	72.925	ENSORLG00015010408	vars2	67	72.925	Oryzias_latipes_hsok
ENSHCOG00000017907	vars2	97	74.014	ENSOMEG00000008360	vars2	68	74.014	Oryzias_melastigma
ENSHCOG00000017907	vars2	94	51.690	ENSOGAG00000006087	VARS2	67	49.270	Otolemur_garnettii
ENSHCOG00000017907	vars2	94	51.408	ENSOARG00000010844	VARS2	68	49.535	Ovis_aries
ENSHCOG00000017907	vars2	95	50.904	ENSPPAG00000041141	VARS2	69	48.871	Pan_paniscus
ENSHCOG00000017907	vars2	94	52.975	ENSPPRG00000006751	VARS2	63	52.975	Panthera_pardus
ENSHCOG00000017907	vars2	94	52.833	ENSPTIG00000017799	VARS2	68	52.833	Panthera_tigris_altaica
ENSHCOG00000017907	vars2	95	50.904	ENSPTRG00000034497	VARS2	69	48.871	Pan_troglodytes
ENSHCOG00000017907	vars2	95	51.821	ENSPANG00000018481	VARS2	67	51.961	Papio_anubis
ENSHCOG00000017907	vars2	97	67.263	ENSPKIG00000011372	vars2	67	67.263	Paramormyrops_kingsleyae
ENSHCOG00000017907	vars2	63	64.361	ENSPSIG00000006206	VARS2	69	64.198	Pelodiscus_sinensis
ENSHCOG00000017907	vars2	97	71.099	ENSPMGG00000000465	vars2	70	71.099	Periophthalmus_magnuspinnatus
ENSHCOG00000017907	vars2	95	51.821	ENSPEMG00000014691	Vars2	71	50.067	Peromyscus_maniculatus_bairdii
ENSHCOG00000017907	vars2	94	52.408	ENSPCIG00000015040	VARS2	71	49.098	Phascolarctos_cinereus
ENSHCOG00000017907	vars2	99	72.400	ENSPFOG00000017616	vars2	69	72.400	Poecilia_formosa
ENSHCOG00000017907	vars2	99	71.979	ENSPLAG00000019778	vars2	70	71.979	Poecilia_latipinna
ENSHCOG00000017907	vars2	99	71.979	ENSPMEG00000011123	vars2	70	71.979	Poecilia_mexicana
ENSHCOG00000017907	vars2	97	70.941	ENSPREG00000014998	vars2	71	70.941	Poecilia_reticulata
ENSHCOG00000017907	vars2	94	52.039	ENSPPYG00000016424	VARS2	69	49.134	Pongo_abelii
ENSHCOG00000017907	vars2	95	50.140	ENSPCOG00000014839	VARS2	67	48.011	Propithecus_coquereli
ENSHCOG00000017907	vars2	94	51.622	ENSPVAG00000004197	VARS2	68	50.135	Pteropus_vampyrus
ENSHCOG00000017907	vars2	86	80.292	ENSPNYG00000010314	vars2	72	80.292	Pundamilia_nyererei
ENSHCOG00000017907	vars2	97	69.482	ENSPNAG00000026793	vars2	68	69.482	Pygocentrus_nattereri
ENSHCOG00000017907	vars2	94	51.622	ENSRNOG00000000833	Vars2	68	50.405	Rattus_norvegicus
ENSHCOG00000017907	vars2	94	51.268	ENSRBIG00000032725	VARS2	69	48.738	Rhinopithecus_bieti
ENSHCOG00000017907	vars2	94	51.127	ENSRROG00000043847	VARS2	69	48.606	Rhinopithecus_roxellana
ENSHCOG00000017907	vars2	95	49.592	ENSSBOG00000033240	VARS2	67	47.520	Saimiri_boliviensis_boliviensis
ENSHCOG00000017907	vars2	93	53.058	ENSSHAG00000009307	VARS2	65	53.058	Sarcophilus_harrisii
ENSHCOG00000017907	vars2	97	67.623	ENSSFOG00015016187	vars2	67	67.623	Scleropages_formosus
ENSHCOG00000017907	vars2	99	75.067	ENSSMAG00000020842	vars2	70	74.614	Scophthalmus_maximus
ENSHCOG00000017907	vars2	99	78.296	ENSSDUG00000011598	vars2	70	78.296	Seriola_dumerili
ENSHCOG00000017907	vars2	99	77.480	ENSSLDG00000015492	vars2	70	77.480	Seriola_lalandi_dorsalis
ENSHCOG00000017907	vars2	81	57.869	ENSSPUG00000014700	VARS2	63	58.401	Sphenodon_punctatus
ENSHCOG00000017907	vars2	99	74.531	ENSSPAG00000004654	vars2	69	74.531	Stegastes_partitus
ENSHCOG00000017907	vars2	98	50.817	ENSSSCG00000001384	VARS2	69	50.000	Sus_scrofa
ENSHCOG00000017907	vars2	97	71.683	ENSTRUG00000005264	vars2	69	71.526	Takifugu_rubripes
ENSHCOG00000017907	vars2	97	68.407	ENSTNIG00000005916	vars2	67	68.681	Tetraodon_nigroviridis
ENSHCOG00000017907	vars2	84	57.927	ENSTTRG00000012243	VARS2	60	57.927	Tursiops_truncatus
ENSHCOG00000017907	vars2	94	52.131	ENSUAMG00000026124	VARS2	78	49.461	Ursus_americanus
ENSHCOG00000017907	vars2	94	52.273	ENSUMAG00000019894	VARS2	65	52.273	Ursus_maritimus
ENSHCOG00000017907	vars2	94	52.408	ENSVVUG00000010754	VARS2	62	52.408	Vulpes_vulpes
ENSHCOG00000017907	vars2	93	52.557	ENSXETG00000003036	vars2	72	52.557	Xenopus_tropicalis
ENSHCOG00000017907	vars2	96	76.349	ENSXCOG00000003455	vars2	69	76.349	Xiphophorus_couchianus
ENSHCOG00000017907	vars2	97	75.646	ENSXMAG00000013523	vars2	68	75.646	Xiphophorus_maculatus