EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000017921 (Gene tree)
Gene ID: 109523400
Gene Symbol: smarcal1
Alias: im:7145331|si:ch211-239d11.1
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 15379 bases
Position: chrKV880190.1:3043927-3059305
Accession: 109523400
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000014538	ResIII	PF04851.15	8.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000022192	-	2829	XM_019882536	ENSHCOP00000014538	839 (aa)	XP_019738095	-

Gene Model

Click here to download ENSHCOG00000017921's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000017921's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000017921	smarcal1	79	61.169	ENSG00000138375	SMARCAL1	99	67.081	Homo_sapiens
ENSHCOG00000017921	smarcal1	98	71.771	ENSAPOG00000020156	SMARCAL1	95	72.165	Acanthochromis_polyacanthus
ENSHCOG00000017921	smarcal1	95	72.896	ENSACIG00000001500	smarcal1	97	72.896	Amphilophus_citrinellus
ENSHCOG00000017921	smarcal1	98	71.724	ENSAOCG00000014266	SMARCAL1	97	71.954	Amphiprion_ocellaris
ENSHCOG00000017921	smarcal1	98	72.184	ENSAPEG00000015861	SMARCAL1	95	72.414	Amphiprion_percula
ENSHCOG00000017921	smarcal1	98	72.520	ENSATEG00000020624	SMARCAL1	96	72.520	Anabas_testudineus
ENSHCOG00000017921	smarcal1	87	60.544	ENSAPLG00000009864	SMARCAL1	76	60.162	Anas_platyrhynchos
ENSHCOG00000017921	smarcal1	98	63.528	ENSACAG00000004612	SMARCAL1	95	63.718	Anolis_carolinensis
ENSHCOG00000017921	smarcal1	98	71.445	ENSACLG00000015990	SMARCAL1	96	71.561	Astatotilapia_calliptera
ENSHCOG00000017921	smarcal1	98	65.141	ENSAMXG00000003350	smarcal1	95	65.141	Astyanax_mexicanus
ENSHCOG00000017921	smarcal1	82	64.774	ENSCPBG00000013599	SMARCAL1	70	64.774	Chrysemys_picta_bellii
ENSHCOG00000017921	smarcal1	76	47.418	ENSCING00000009308	-	99	47.418	Ciona_intestinalis
ENSHCOG00000017921	smarcal1	97	70.058	ENSCSEG00000010785	SMARCAL1	98	70.023	Cynoglossus_semilaevis
ENSHCOG00000017921	smarcal1	98	72.183	ENSCVAG00000018780	SMARCAL1	95	72.183	Cyprinodon_variegatus
ENSHCOG00000017921	smarcal1	67	55.456	ENSEBUG00000011906	SMARCAL1	99	48.476	Eptatretus_burgeri
ENSHCOG00000017921	smarcal1	81	74.669	ENSELUG00000010440	-	66	74.020	Esox_lucius
ENSHCOG00000017921	smarcal1	87	59.401	ENSFALG00000003981	SMARCAL1	74	59.401	Ficedula_albicollis
ENSHCOG00000017921	smarcal1	98	71.864	ENSFHEG00000008380	SMARCAL1	95	71.864	Fundulus_heteroclitus
ENSHCOG00000017921	smarcal1	62	74.232	ENSGMOG00000010034	smarcal1	95	74.232	Gadus_morhua
ENSHCOG00000017921	smarcal1	91	58.225	ENSGALG00000011475	RPL37A	78	58.225	Gallus_gallus
ENSHCOG00000017921	smarcal1	89	79.626	ENSGACG00000006073	SMARCAL1	99	82.276	Gasterosteus_aculeatus
ENSHCOG00000017921	smarcal1	79	65.309	ENSGAGG00000015660	SMARCAL1	72	65.309	Gopherus_agassizii
ENSHCOG00000017921	smarcal1	98	71.445	ENSHBUG00000002973	smarcal1	96	71.445	Haplochromis_burtoni
ENSHCOG00000017921	smarcal1	98	68.519	ENSKMAG00000012023	SMARCAL1	98	68.866	Kryptolebias_marmoratus
ENSHCOG00000017921	smarcal1	93	68.140	ENSLBEG00000003493	smarcal1	100	68.140	Labrus_bergylta
ENSHCOG00000017921	smarcal1	96	71.726	ENSLBEG00000022915	smarcal1	100	71.726	Labrus_bergylta
ENSHCOG00000017921	smarcal1	80	60.268	ENSLACG00000010974	SMARCAL1	78	55.925	Latimeria_chalumnae
ENSHCOG00000017921	smarcal1	95	61.383	ENSLOCG00000009637	smarcal1	99	61.383	Lepisosteus_oculatus
ENSHCOG00000017921	smarcal1	98	72.929	ENSMAMG00000000828	SMARCAL1	97	72.929	Mastacembelus_armatus
ENSHCOG00000017921	smarcal1	98	71.329	ENSMZEG00005007660	SMARCAL1	96	71.445	Maylandia_zebra
ENSHCOG00000017921	smarcal1	87	59.730	ENSMGAG00000011658	SMARCAL1	78	59.730	Meleagris_gallopavo
ENSHCOG00000017921	smarcal1	95	68.596	ENSMMOG00000003842	smarcal1	94	68.596	Mola_mola
ENSHCOG00000017921	smarcal1	82	60.288	ENSMODG00000015544	SMARCAL1	72	60.288	Monodelphis_domestica
ENSHCOG00000017921	smarcal1	95	72.482	ENSNBRG00000016273	smarcal1	97	72.482	Neolamprologus_brichardi
ENSHCOG00000017921	smarcal1	77	63.247	ENSMEUG00000004395	SMARCAL1	74	63.247	Notamacropus_eugenii
ENSHCOG00000017921	smarcal1	98	71.544	ENSONIG00000009036	smarcal1	98	80.867	Oreochromis_niloticus
ENSHCOG00000017921	smarcal1	98	68.765	ENSORLG00000016455	SMARCAL1	95	68.765	Oryzias_latipes
ENSHCOG00000017921	smarcal1	98	68.287	ENSORLG00020001610	SMARCAL1	95	68.287	Oryzias_latipes_hni
ENSHCOG00000017921	smarcal1	98	68.531	ENSORLG00015001865	SMARCAL1	95	68.531	Oryzias_latipes_hsok
ENSHCOG00000017921	smarcal1	98	70.813	ENSOMEG00000001845	smarcal1	95	70.813	Oryzias_melastigma
ENSHCOG00000017921	smarcal1	98	70.520	ENSPMGG00000019092	SMARCAL1	95	70.520	Periophthalmus_magnuspinnatus
ENSHCOG00000017921	smarcal1	80	61.686	ENSPCIG00000022514	SMARCAL1	73	62.064	Phascolarctos_cinereus
ENSHCOG00000017921	smarcal1	98	71.212	ENSPFOG00000000560	SMARCAL1	95	71.714	Poecilia_formosa
ENSHCOG00000017921	smarcal1	98	71.127	ENSPMEG00000018146	SMARCAL1	95	71.479	Poecilia_mexicana
ENSHCOG00000017921	smarcal1	59	82.870	ENSPREG00000009591	SMARCAL1	93	82.870	Poecilia_reticulata
ENSHCOG00000017921	smarcal1	98	65.643	ENSPNAG00000014900	smarcal1	90	65.525	Pygocentrus_nattereri
ENSHCOG00000017921	smarcal1	81	57.933	ENSSHAG00000013538	SMARCAL1	95	51.091	Sarcophilus_harrisii
ENSHCOG00000017921	smarcal1	98	70.668	ENSSMAG00000010427	SMARCAL1	95	70.668	Scophthalmus_maximus
ENSHCOG00000017921	smarcal1	98	71.705	ENSSDUG00000017470	SMARCAL1	93	72.229	Seriola_dumerili
ENSHCOG00000017921	smarcal1	98	71.995	ENSSLDG00000007224	SMARCAL1	95	72.520	Seriola_lalandi_dorsalis
ENSHCOG00000017921	smarcal1	91	59.791	ENSSPUG00000015369	SMARCAL1	74	59.791	Sphenodon_punctatus
ENSHCOG00000017921	smarcal1	95	74.097	ENSSPAG00000003742	smarcal1	99	73.742	Stegastes_partitus
ENSHCOG00000017921	smarcal1	81	59.118	ENSSSCG00000035501	SMARCAL1	75	58.971	Sus_scrofa
ENSHCOG00000017921	smarcal1	81	61.961	ENSTGUG00000005079	SMARCAL1	99	61.961	Taeniopygia_guttata
ENSHCOG00000017921	smarcal1	98	63.423	ENSTRUG00000010701	SMARCAL1	96	63.423	Takifugu_rubripes
ENSHCOG00000017921	smarcal1	79	52.853	ENSTTRG00000009001	SMARCAL1	70	52.853	Tursiops_truncatus
ENSHCOG00000017921	smarcal1	98	55.161	ENSXETG00000000465	smarcal1	95	55.161	Xenopus_tropicalis