EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000018509 (Gene tree)
Gene ID: 109508270
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 11924 bases
Position: chrKV880521.1:168866-180789
Accession: 109508270
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000014976	CPSF_A	PF03178.15	8.8e-92	1	1
ENSHCOP00000014961	CPSF_A	PF03178.15	9.5e-79	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000022747	-	6401	-	ENSHCOP00000014961	1447 (aa)	-	-
ENSHCOT00000022707	-	1209	-	ENSHCOP00000014948	402 (aa)	-	-
ENSHCOT00000022756	-	6449	XM_019858151	ENSHCOP00000014976	1463 (aa)	XP_019713710	UPI00094EF465

Gene Model

Click here to download ENSHCOG00000018509's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000018509's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000018509	cpsf1	100	76.746	ENSG00000071894	CPSF1	100	77.778	Homo_sapiens
ENSHCOG00000018509	cpsf1	100	89.198	ENSAPOG00000019621	cpsf1	100	89.402	Acanthochromis_polyacanthus
ENSHCOG00000018509	cpsf1	97	76.053	ENSAMEG00000005557	CPSF1	99	75.913	Ailuropoda_melanoleuca
ENSHCOG00000018509	cpsf1	100	86.413	ENSACIG00000006112	cpsf1	100	86.073	Amphilophus_citrinellus
ENSHCOG00000018509	cpsf1	100	87.060	ENSAOCG00000007120	cpsf1	100	87.060	Amphiprion_ocellaris
ENSHCOG00000018509	cpsf1	100	88.008	ENSAPEG00000005755	cpsf1	100	87.940	Amphiprion_percula
ENSHCOG00000018509	cpsf1	100	89.756	ENSATEG00000011097	cpsf1	100	89.756	Anabas_testudineus
ENSHCOG00000018509	cpsf1	93	72.794	ENSACAG00000009655	CPSF1	100	72.906	Anolis_carolinensis
ENSHCOG00000018509	cpsf1	100	76.934	ENSANAG00000036514	CPSF1	100	77.085	Aotus_nancymaae
ENSHCOG00000018509	cpsf1	99	89.293	ENSACLG00000012231	cpsf1	99	89.440	Astatotilapia_calliptera
ENSHCOG00000018509	cpsf1	100	77.242	ENSAMXG00000008485	cpsf1	100	76.970	Astyanax_mexicanus
ENSHCOG00000018509	cpsf1	100	75.683	ENSBTAG00000008355	CPSF1	100	76.690	Bos_taurus
ENSHCOG00000018509	cpsf1	100	31.586	WBGene00022301	cpsf-1	99	40.395	Caenorhabditis_elegans
ENSHCOG00000018509	cpsf1	100	76.934	ENSCJAG00000021421	CPSF1	100	77.085	Callithrix_jacchus
ENSHCOG00000018509	cpsf1	97	77.231	ENSCAFG00000001600	CPSF1	100	76.558	Canis_familiaris
ENSHCOG00000018509	cpsf1	100	76.762	ENSCAFG00020020821	CPSF1	100	76.829	Canis_lupus_dingo
ENSHCOG00000018509	cpsf1	100	73.177	ENSCHIG00000015833	CPSF1	100	73.040	Capra_hircus
ENSHCOG00000018509	cpsf1	100	77.137	ENSTSYG00000028560	CPSF1	100	78.704	Carlito_syrichta
ENSHCOG00000018509	cpsf1	97	76.804	ENSCAPG00000014921	CPSF1	99	76.681	Cavia_aperea
ENSHCOG00000018509	cpsf1	100	76.255	ENSCPOG00000011448	CPSF1	100	76.136	Cavia_porcellus
ENSHCOG00000018509	cpsf1	100	77.001	ENSCCAG00000037658	CPSF1	100	77.982	Cebus_capucinus
ENSHCOG00000018509	cpsf1	100	76.730	ENSCATG00000037234	CPSF1	100	77.778	Cercocebus_atys
ENSHCOG00000018509	cpsf1	100	77.325	ENSCLAG00000012166	CPSF1	100	77.205	Chinchilla_lanigera
ENSHCOG00000018509	cpsf1	100	76.866	ENSCSAG00000008502	CPSF1	100	76.934	Chlorocebus_sabaeus
ENSHCOG00000018509	cpsf1	99	78.684	ENSCPBG00000018910	CPSF1	96	78.255	Chrysemys_picta_bellii
ENSHCOG00000018509	cpsf1	96	48.138	ENSCING00000000514	-	100	48.138	Ciona_intestinalis
ENSHCOG00000018509	cpsf1	99	48.618	ENSCSAVG00000002293	-	99	53.241	Ciona_savignyi
ENSHCOG00000018509	cpsf1	98	74.169	ENSCANG00000032760	CPSF1	100	78.241	Colobus_angolensis_palliatus
ENSHCOG00000018509	cpsf1	100	77.189	ENSCGRG00001016344	Cpsf1	100	77.069	Cricetulus_griseus_chok1gshd
ENSHCOG00000018509	cpsf1	100	75.492	ENSCGRG00000003118	Cpsf1	100	75.373	Cricetulus_griseus_crigri
ENSHCOG00000018509	cpsf1	100	84.908	ENSCSEG00000013464	cpsf1	99	87.208	Cynoglossus_semilaevis
ENSHCOG00000018509	cpsf1	86	84.170	ENSCVAG00000014059	cpsf1	100	81.019	Cyprinodon_variegatus
ENSHCOG00000018509	cpsf1	100	84.057	ENSDARG00000034178	cpsf1	100	84.125	Danio_rerio
ENSHCOG00000018509	cpsf1	58	80.870	ENSDNOG00000043654	CPSF1	94	80.870	Dasypus_novemcinctus
ENSHCOG00000018509	cpsf1	97	77.481	ENSDORG00000006278	Cpsf1	99	77.481	Dipodomys_ordii
ENSHCOG00000018509	cpsf1	100	43.808	FBgn0024698	Cpsf160	100	43.696	Drosophila_melanogaster
ENSHCOG00000018509	cpsf1	81	83.893	ENSETEG00000006022	CPSF1	83	83.893	Echinops_telfairi
ENSHCOG00000018509	cpsf1	100	77.100	ENSEASG00005010774	CPSF1	100	76.980	Equus_asinus_asinus
ENSHCOG00000018509	cpsf1	100	77.033	ENSECAG00000022209	CPSF1	100	76.913	Equus_caballus
ENSHCOG00000018509	cpsf1	100	77.131	ENSEEUG00000000471	CPSF1	100	76.975	Erinaceus_europaeus
ENSHCOG00000018509	cpsf1	100	84.331	ENSELUG00000012271	cpsf1	100	84.468	Esox_lucius
ENSHCOG00000018509	cpsf1	100	77.393	ENSFDAG00000016060	CPSF1	100	77.273	Fukomys_damarensis
ENSHCOG00000018509	cpsf1	100	86.391	ENSFHEG00000016801	cpsf1	100	86.391	Fundulus_heteroclitus
ENSHCOG00000018509	cpsf1	100	85.153	ENSGMOG00000000796	cpsf1	100	85.047	Gadus_morhua
ENSHCOG00000018509	cpsf1	96	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
ENSHCOG00000018509	cpsf1	100	86.505	ENSGACG00000008703	cpsf1	100	86.370	Gasterosteus_aculeatus
ENSHCOG00000018509	cpsf1	100	75.289	ENSGAGG00000004276	CPSF1	98	79.167	Gopherus_agassizii
ENSHCOG00000018509	cpsf1	100	76.986	ENSGGOG00000016185	CPSF1	100	77.778	Gorilla_gorilla
ENSHCOG00000018509	cpsf1	100	87.935	ENSHBUG00000018900	cpsf1	100	87.730	Haplochromis_burtoni
ENSHCOG00000018509	cpsf1	100	77.393	ENSHGLG00000016139	CPSF1	100	77.273	Heterocephalus_glaber_female
ENSHCOG00000018509	cpsf1	100	77.325	ENSHGLG00100009750	CPSF1	100	77.205	Heterocephalus_glaber_male
ENSHCOG00000018509	cpsf1	100	80.881	ENSIPUG00000011259	cpsf1	100	80.814	Ictalurus_punctatus
ENSHCOG00000018509	cpsf1	97	76.762	ENSSTOG00000009957	CPSF1	99	76.971	Ictidomys_tridecemlineatus
ENSHCOG00000018509	cpsf1	100	77.211	ENSJJAG00000023002	Cpsf1	100	77.294	Jaculus_jaculus
ENSHCOG00000018509	cpsf1	91	92.163	ENSKMAG00000001940	cpsf1	99	92.163	Kryptolebias_marmoratus
ENSHCOG00000018509	cpsf1	100	88.564	ENSLBEG00000003601	cpsf1	100	89.184	Labrus_bergylta
ENSHCOG00000018509	cpsf1	87	77.605	ENSLACG00000000233	CPSF1	92	77.605	Latimeria_chalumnae
ENSHCOG00000018509	cpsf1	100	80.514	ENSLOCG00000008484	cpsf1	100	80.920	Lepisosteus_oculatus
ENSHCOG00000018509	cpsf1	97	77.161	ENSLAFG00000022601	CPSF1	99	77.107	Loxodonta_africana
ENSHCOG00000018509	cpsf1	100	76.866	ENSMFAG00000037013	CPSF1	100	77.778	Macaca_fascicularis
ENSHCOG00000018509	cpsf1	100	76.866	ENSMMUG00000007380	CPSF1	100	79.233	Macaca_mulatta
ENSHCOG00000018509	cpsf1	97	77.426	ENSMNEG00000043564	CPSF1	100	77.778	Macaca_nemestrina
ENSHCOG00000018509	cpsf1	100	76.866	ENSMLEG00000043010	CPSF1	100	77.778	Mandrillus_leucophaeus
ENSHCOG00000018509	cpsf1	100	89.606	ENSMAMG00000003803	cpsf1	100	89.538	Mastacembelus_armatus
ENSHCOG00000018509	cpsf1	100	84.973	ENSMZEG00005001168	cpsf1	100	84.768	Maylandia_zebra
ENSHCOG00000018509	cpsf1	100	77.137	ENSMAUG00000003601	Cpsf1	100	77.220	Mesocricetus_auratus
ENSHCOG00000018509	cpsf1	100	76.782	ENSMICG00000015767	CPSF1	100	76.782	Microcebus_murinus
ENSHCOG00000018509	cpsf1	100	76.850	ENSMOCG00000022758	Cpsf1	100	76.934	Microtus_ochrogaster
ENSHCOG00000018509	cpsf1	100	87.508	ENSMMOG00000021245	cpsf1	100	87.780	Mola_mola
ENSHCOG00000018509	cpsf1	100	77.575	ENSMODG00000010755	CPSF1	100	77.470	Monodelphis_domestica
ENSHCOG00000018509	cpsf1	100	89.116	ENSMALG00000020545	cpsf1	100	89.524	Monopterus_albus
ENSHCOG00000018509	cpsf1	100	77.257	MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.341	Mus_caroli
ENSHCOG00000018509	cpsf1	100	77.189	ENSMUSG00000034022	Cpsf1	100	77.273	Mus_musculus
ENSHCOG00000018509	cpsf1	100	77.189	MGP_PahariEiJ_G0019946	Cpsf1	100	77.273	Mus_pahari
ENSHCOG00000018509	cpsf1	100	77.257	MGP_SPRETEiJ_G0020839	Cpsf1	100	77.341	Mus_spretus
ENSHCOG00000018509	cpsf1	94	77.625	ENSMPUG00000006419	CPSF1	93	77.408	Mustela_putorius_furo
ENSHCOG00000018509	cpsf1	100	76.918	ENSNGAG00000022460	Cpsf1	100	77.001	Nannospalax_galili
ENSHCOG00000018509	cpsf1	100	82.799	ENSNBRG00000000813	cpsf1	100	82.457	Neolamprologus_brichardi
ENSHCOG00000018509	cpsf1	86	69.369	ENSNLEG00000010633	-	100	77.778	Nomascus_leucogenys
ENSHCOG00000018509	cpsf1	82	84.884	ENSMEUG00000014922	CPSF1	85	84.884	Notamacropus_eugenii
ENSHCOG00000018509	cpsf1	62	87.895	ENSOPRG00000004693	-	70	87.895	Ochotona_princeps
ENSHCOG00000018509	cpsf1	100	77.393	ENSODEG00000013995	CPSF1	100	77.273	Octodon_degus
ENSHCOG00000018509	cpsf1	100	87.992	ENSONIG00000007676	cpsf1	100	87.788	Oreochromis_niloticus
ENSHCOG00000018509	cpsf1	59	78.571	ENSOANG00000010716	CPSF1	89	78.571	Ornithorhynchus_anatinus
ENSHCOG00000018509	cpsf1	100	88.003	ENSORLG00000013544	cpsf1	100	87.935	Oryzias_latipes
ENSHCOG00000018509	cpsf1	100	88.071	ENSORLG00020021693	cpsf1	100	88.003	Oryzias_latipes_hni
ENSHCOG00000018509	cpsf1	100	88.071	ENSORLG00015009979	cpsf1	100	88.003	Oryzias_latipes_hsok
ENSHCOG00000018509	cpsf1	100	88.147	ENSOMEG00000011849	cpsf1	100	88.215	Oryzias_melastigma
ENSHCOG00000018509	cpsf1	100	77.069	ENSOGAG00000000315	CPSF1	100	77.153	Otolemur_garnettii
ENSHCOG00000018509	cpsf1	100	77.001	ENSPPAG00000019280	CPSF1	100	79.630	Pan_paniscus
ENSHCOG00000018509	cpsf1	100	77.001	ENSPTRG00000049288	-	100	79.630	Pan_troglodytes
ENSHCOG00000018509	cpsf1	100	75.717	ENSPTRG00000051253	-	100	79.630	Pan_troglodytes
ENSHCOG00000018509	cpsf1	97	77.496	ENSPANG00000015005	CPSF1	100	77.778	Papio_anubis
ENSHCOG00000018509	cpsf1	100	83.899	ENSPKIG00000002582	cpsf1	100	84.057	Paramormyrops_kingsleyae
ENSHCOG00000018509	cpsf1	100	77.778	ENSPCIG00000009035	CPSF1	100	77.673	Phascolarctos_cinereus
ENSHCOG00000018509	cpsf1	100	87.627	ENSPFOG00000012870	cpsf1	100	87.288	Poecilia_formosa
ENSHCOG00000018509	cpsf1	100	87.840	ENSPREG00000016307	cpsf1	100	88.111	Poecilia_reticulata
ENSHCOG00000018509	cpsf1	100	69.810	ENSPPYG00000018973	CPSF1	100	70.102	Pongo_abelii
ENSHCOG00000018509	cpsf1	90	84.091	ENSPCAG00000011541	CPSF1	93	84.091	Procavia_capensis
ENSHCOG00000018509	cpsf1	100	73.978	ENSPCOG00000020001	CPSF1	100	77.778	Propithecus_coquereli
ENSHCOG00000018509	cpsf1	91	86.571	ENSPVAG00000006761	CPSF1	91	86.571	Pteropus_vampyrus
ENSHCOG00000018509	cpsf1	100	89.463	ENSPNYG00000004906	cpsf1	100	89.395	Pundamilia_nyererei
ENSHCOG00000018509	cpsf1	100	79.918	ENSPNAG00000024395	cpsf1	100	79.646	Pygocentrus_nattereri
ENSHCOG00000018509	cpsf1	100	77.158	ENSRNOG00000030705	Cpsf1	100	77.242	Rattus_norvegicus
ENSHCOG00000018509	cpsf1	100	76.798	ENSRBIG00000044907	CPSF1	100	78.241	Rhinopithecus_bieti
ENSHCOG00000018509	cpsf1	100	76.798	ENSRROG00000044861	CPSF1	100	78.241	Rhinopithecus_roxellana
ENSHCOG00000018509	cpsf1	97	77.356	ENSSBOG00000027177	CPSF1	99	77.512	Saimiri_boliviensis_boliviensis
ENSHCOG00000018509	cpsf1	100	77.507	ENSSHAG00000006500	CPSF1	100	77.402	Sarcophilus_harrisii
ENSHCOG00000018509	cpsf1	100	81.935	ENSSFOG00015004606	cpsf1	100	84.582	Scleropages_formosus
ENSHCOG00000018509	cpsf1	100	89.341	ENSSMAG00000020547	cpsf1	100	89.274	Scophthalmus_maximus
ENSHCOG00000018509	cpsf1	100	88.123	ENSSDUG00000001100	cpsf1	100	88.464	Seriola_dumerili
ENSHCOG00000018509	cpsf1	100	88.328	ENSSLDG00000003619	cpsf1	100	88.259	Seriola_lalandi_dorsalis
ENSHCOG00000018509	cpsf1	89	74.232	ENSSARG00000003643	CPSF1	92	74.074	Sorex_araneus
ENSHCOG00000018509	cpsf1	96	79.802	ENSSPUG00000014396	CPSF1	99	79.228	Sphenodon_punctatus
ENSHCOG00000018509	cpsf1	100	89.402	ENSSPAG00000005349	cpsf1	100	89.470	Stegastes_partitus
ENSHCOG00000018509	cpsf1	100	76.220	ENSSSCG00000005906	CPSF1	100	76.303	Sus_scrofa
ENSHCOG00000018509	cpsf1	96	87.571	ENSTRUG00000013134	cpsf1	99	87.350	Takifugu_rubripes
ENSHCOG00000018509	cpsf1	100	86.226	ENSTNIG00000014027	cpsf1	100	86.158	Tetraodon_nigroviridis
ENSHCOG00000018509	cpsf1	78	70.462	ENSTBEG00000001756	CPSF1	91	70.132	Tupaia_belangeri
ENSHCOG00000018509	cpsf1	90	82.383	ENSTTRG00000001937	CPSF1	90	82.383	Tursiops_truncatus
ENSHCOG00000018509	cpsf1	97	77.583	ENSUAMG00000006476	CPSF1	98	77.442	Ursus_americanus
ENSHCOG00000018509	cpsf1	100	86.475	ENSXCOG00000003608	cpsf1	100	86.134	Xiphophorus_couchianus
ENSHCOG00000018509	cpsf1	100	85.861	ENSXMAG00000005798	cpsf1	100	85.597	Xiphophorus_maculatus