EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000018606 (Gene tree)
Gene ID: 109510771
Gene Symbol: sbds
Alias: zgc:56700
Full Name: SBDS%2C ribosome maturation factor
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 4430 bases
Position: chrKV880533.1:869061-873490
Accession: 109510771
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000015071	SBDS	PF01172.18	2.5e-33	1	1
ENSHCOP00000015071	SBDS_C	PF09377.10	2.5e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000027925	-	3367	XM_019861333	ENSHCOP00000015071	249 (aa)	XP_019716892	UPI00094EAE3A

Gene Model

Click here to download ENSHCOG00000018606's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000018606's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000018606	sbds	100	81.526	ENSG00000126524	SBDS	97	89.157	Homo_sapiens
ENSHCOG00000018606	sbds	100	90.763	ENSAPOG00000014285	sbds	100	90.763	Acanthochromis_polyacanthus
ENSHCOG00000018606	sbds	100	82.329	ENSAMEG00000018167	SBDS	99	82.329	Ailuropoda_melanoleuca
ENSHCOG00000018606	sbds	100	90.079	ENSACIG00000007308	sbds	100	90.079	Amphilophus_citrinellus
ENSHCOG00000018606	sbds	100	91.968	ENSAOCG00000016770	sbds	100	91.968	Amphiprion_ocellaris
ENSHCOG00000018606	sbds	100	91.566	ENSAPEG00000015897	sbds	100	91.566	Amphiprion_percula
ENSHCOG00000018606	sbds	100	89.960	ENSATEG00000006901	sbds	100	89.960	Anabas_testudineus
ENSHCOG00000018606	sbds	93	75.758	ENSANAG00000024342	-	95	79.518	Aotus_nancymaae
ENSHCOG00000018606	sbds	83	79.612	ENSANAG00000037501	-	99	79.612	Aotus_nancymaae
ENSHCOG00000018606	sbds	100	90.361	ENSACLG00000018750	sbds	100	90.361	Astatotilapia_calliptera
ENSHCOG00000018606	sbds	100	85.542	ENSAMXG00000005361	sbds	99	85.542	Astyanax_mexicanus
ENSHCOG00000018606	sbds	100	81.124	ENSBTAG00000004051	SBDS	99	81.124	Bos_taurus
ENSHCOG00000018606	sbds	98	54.472	WBGene00021063	sbds-1	97	54.472	Caenorhabditis_elegans
ENSHCOG00000018606	sbds	100	81.124	ENSCJAG00000041007	SBDS	99	81.124	Callithrix_jacchus
ENSHCOG00000018606	sbds	100	80.478	ENSCAFG00000010797	SBDS	99	80.478	Canis_familiaris
ENSHCOG00000018606	sbds	100	82.329	ENSCAFG00020005357	SBDS	99	82.329	Canis_lupus_dingo
ENSHCOG00000018606	sbds	100	81.526	ENSCHIG00000026854	SBDS	99	81.526	Capra_hircus
ENSHCOG00000018606	sbds	100	81.526	ENSTSYG00000033822	SBDS	99	81.526	Carlito_syrichta
ENSHCOG00000018606	sbds	65	76.074	ENSCAPG00000006634	SBDS	99	76.074	Cavia_aperea
ENSHCOG00000018606	sbds	100	80.723	ENSCPOG00000036143	SBDS	99	80.723	Cavia_porcellus
ENSHCOG00000018606	sbds	100	81.526	ENSCCAG00000020671	SBDS	93	89.157	Cebus_capucinus
ENSHCOG00000018606	sbds	100	81.526	ENSCATG00000039026	SBDS	99	81.526	Cercocebus_atys
ENSHCOG00000018606	sbds	99	56.048	ENSCLAG00000002113	-	99	56.048	Chinchilla_lanigera
ENSHCOG00000018606	sbds	100	81.124	ENSCLAG00000005721	-	99	81.124	Chinchilla_lanigera
ENSHCOG00000018606	sbds	100	81.526	ENSCSAG00000018275	SBDS	99	81.526	Chlorocebus_sabaeus
ENSHCOG00000018606	sbds	100	76.707	ENSCHOG00000003795	SBDS	99	76.707	Choloepus_hoffmanni
ENSHCOG00000018606	sbds	100	82.731	ENSCPBG00000014893	SBDS	99	82.731	Chrysemys_picta_bellii
ENSHCOG00000018606	sbds	99	66.935	ENSCSAVG00000011811	-	99	66.935	Ciona_savignyi
ENSHCOG00000018606	sbds	100	81.124	ENSCANG00000032368	SBDS	99	81.124	Colobus_angolensis_palliatus
ENSHCOG00000018606	sbds	65	77.301	ENSCGRG00001019886	Sbds	99	77.301	Cricetulus_griseus_chok1gshd
ENSHCOG00000018606	sbds	83	79.612	ENSCGRG00000009211	Sbds	99	79.612	Cricetulus_griseus_crigri
ENSHCOG00000018606	sbds	100	89.960	ENSCSEG00000005798	sbds	100	89.960	Cynoglossus_semilaevis
ENSHCOG00000018606	sbds	100	88.755	ENSCVAG00000001053	sbds	100	88.755	Cyprinodon_variegatus
ENSHCOG00000018606	sbds	100	83.936	ENSDARG00000027803	sbds	99	83.936	Danio_rerio
ENSHCOG00000018606	sbds	100	81.526	ENSDNOG00000041174	SBDS	99	81.526	Dasypus_novemcinctus
ENSHCOG00000018606	sbds	100	81.928	ENSDORG00000026218	Sbds	99	81.928	Dipodomys_ordii
ENSHCOG00000018606	sbds	91	61.404	FBgn0035714	CG8549	98	60.324	Drosophila_melanogaster
ENSHCOG00000018606	sbds	83	63.107	ENSEBUG00000015780	sbds	92	63.107	Eptatretus_burgeri
ENSHCOG00000018606	sbds	100	81.526	ENSEASG00005008821	SBDS	99	81.526	Equus_asinus_asinus
ENSHCOG00000018606	sbds	100	81.526	ENSECAG00000008202	SBDS	99	81.526	Equus_caballus
ENSHCOG00000018606	sbds	84	63.942	ENSEEUG00000004768	SBDS	100	63.942	Erinaceus_europaeus
ENSHCOG00000018606	sbds	100	85.944	ENSELUG00000008382	sbds	99	85.944	Esox_lucius
ENSHCOG00000018606	sbds	100	81.928	ENSFCAG00000022142	SBDS	99	81.928	Felis_catus
ENSHCOG00000018606	sbds	100	83.534	ENSFALG00000013808	SBDS	99	83.534	Ficedula_albicollis
ENSHCOG00000018606	sbds	100	80.723	ENSFDAG00000018947	-	99	80.723	Fukomys_damarensis
ENSHCOG00000018606	sbds	100	85.944	ENSFHEG00000000708	sbds	100	85.944	Fundulus_heteroclitus
ENSHCOG00000018606	sbds	100	85.542	ENSGMOG00000018356	sbds	99	85.542	Gadus_morhua
ENSHCOG00000018606	sbds	100	81.928	ENSGALG00000027989	SBDS	99	81.928	Gallus_gallus
ENSHCOG00000018606	sbds	92	85.217	ENSGAFG00000014204	sbds	100	85.217	Gambusia_affinis
ENSHCOG00000018606	sbds	100	86.747	ENSGACG00000012697	sbds	100	86.747	Gasterosteus_aculeatus
ENSHCOG00000018606	sbds	86	82.160	ENSGAGG00000022402	SBDS	99	82.160	Gopherus_agassizii
ENSHCOG00000018606	sbds	96	62.917	ENSGGOG00000040023	-	92	62.917	Gorilla_gorilla
ENSHCOG00000018606	sbds	100	90.361	ENSHBUG00000002660	sbds	100	90.361	Haplochromis_burtoni
ENSHCOG00000018606	sbds	100	79.116	ENSHGLG00000009671	SBDS	99	79.116	Heterocephalus_glaber_female
ENSHCOG00000018606	sbds	100	79.116	ENSHGLG00100011332	SBDS	99	79.116	Heterocephalus_glaber_male
ENSHCOG00000018606	sbds	100	85.542	ENSIPUG00000006536	sbds	99	85.542	Ictalurus_punctatus
ENSHCOG00000018606	sbds	100	78.313	ENSJJAG00000012033	-	99	78.313	Jaculus_jaculus
ENSHCOG00000018606	sbds	100	58.730	ENSJJAG00000003934	-	99	59.200	Jaculus_jaculus
ENSHCOG00000018606	sbds	100	91.165	ENSKMAG00000018542	sbds	100	91.165	Kryptolebias_marmoratus
ENSHCOG00000018606	sbds	100	88.353	ENSLBEG00000016687	sbds	100	88.353	Labrus_bergylta
ENSHCOG00000018606	sbds	100	69.565	ENSLACG00000018916	SBDS	99	69.565	Latimeria_chalumnae
ENSHCOG00000018606	sbds	100	85.141	ENSLOCG00000004073	sbds	99	85.141	Lepisosteus_oculatus
ENSHCOG00000018606	sbds	100	81.928	ENSLAFG00000008763	SBDS	99	81.928	Loxodonta_africana
ENSHCOG00000018606	sbds	100	81.526	ENSMFAG00000032620	SBDS	99	81.526	Macaca_fascicularis
ENSHCOG00000018606	sbds	100	81.526	ENSMMUG00000045653	SBDS	99	81.526	Macaca_mulatta
ENSHCOG00000018606	sbds	100	81.526	ENSMNEG00000031523	SBDS	99	81.526	Macaca_nemestrina
ENSHCOG00000018606	sbds	100	64.427	ENSMLEG00000036826	SBDS	99	64.427	Mandrillus_leucophaeus
ENSHCOG00000018606	sbds	100	91.165	ENSMAMG00000016062	sbds	100	91.165	Mastacembelus_armatus
ENSHCOG00000018606	sbds	100	90.361	ENSMZEG00005024385	sbds	100	90.361	Maylandia_zebra
ENSHCOG00000018606	sbds	100	81.928	ENSMGAG00000002119	SBDS	99	81.928	Meleagris_gallopavo
ENSHCOG00000018606	sbds	100	65.863	ENSMAUG00000022214	-	100	65.863	Mesocricetus_auratus
ENSHCOG00000018606	sbds	100	81.526	ENSMICG00000014366	SBDS	99	81.526	Microcebus_murinus
ENSHCOG00000018606	sbds	100	81.124	ENSMOCG00000011739	Sbds	99	81.124	Microtus_ochrogaster
ENSHCOG00000018606	sbds	100	80.400	ENSMMOG00000005061	sbds	100	80.400	Mola_mola
ENSHCOG00000018606	sbds	100	81.928	ENSMODG00000006644	SBDS	99	81.928	Monodelphis_domestica
ENSHCOG00000018606	sbds	100	86.345	ENSMALG00000010219	sbds	100	86.345	Monopterus_albus
ENSHCOG00000018606	sbds	100	81.124	MGP_CAROLIEiJ_G0027800	Sbds	98	90.476	Mus_caroli
ENSHCOG00000018606	sbds	100	81.526	ENSMUSG00000025337	Sbds	98	90.476	Mus_musculus
ENSHCOG00000018606	sbds	100	81.124	MGP_PahariEiJ_G0024384	Sbds	98	90.476	Mus_pahari
ENSHCOG00000018606	sbds	100	81.526	MGP_SPRETEiJ_G0028798	Sbds	98	90.476	Mus_spretus
ENSHCOG00000018606	sbds	67	81.437	ENSMPUG00000016192	SBDS	96	81.437	Mustela_putorius_furo
ENSHCOG00000018606	sbds	73	76.243	ENSMLUG00000013575	SBDS	99	76.243	Myotis_lucifugus
ENSHCOG00000018606	sbds	100	81.928	ENSNGAG00000012093	Sbds	99	81.928	Nannospalax_galili
ENSHCOG00000018606	sbds	100	90.361	ENSNBRG00000017027	sbds	100	90.361	Neolamprologus_brichardi
ENSHCOG00000018606	sbds	100	81.526	ENSNLEG00000013288	SBDS	99	81.526	Nomascus_leucogenys
ENSHCOG00000018606	sbds	100	81.124	ENSOPRG00000008721	SBDS	99	81.124	Ochotona_princeps
ENSHCOG00000018606	sbds	100	72.289	ENSODEG00000019253	-	84	72.289	Octodon_degus
ENSHCOG00000018606	sbds	100	60.643	ENSODEG00000000137	-	84	63.454	Octodon_degus
ENSHCOG00000018606	sbds	100	63.454	ENSODEG00000001116	-	99	63.454	Octodon_degus
ENSHCOG00000018606	sbds	100	90.361	ENSONIG00000005874	sbds	100	90.361	Oreochromis_niloticus
ENSHCOG00000018606	sbds	83	79.612	ENSOANG00000007674	-	99	80.392	Ornithorhynchus_anatinus
ENSHCOG00000018606	sbds	100	81.928	ENSOCUG00000003170	SBDS	99	81.928	Oryctolagus_cuniculus
ENSHCOG00000018606	sbds	100	86.747	ENSORLG00000023489	sbds	100	86.747	Oryzias_latipes
ENSHCOG00000018606	sbds	100	86.345	ENSORLG00020019282	sbds	100	86.345	Oryzias_latipes_hni
ENSHCOG00000018606	sbds	100	86.345	ENSORLG00015008005	sbds	100	86.345	Oryzias_latipes_hsok
ENSHCOG00000018606	sbds	100	87.149	ENSOMEG00000022747	sbds	100	87.149	Oryzias_melastigma
ENSHCOG00000018606	sbds	100	69.880	ENSOGAG00000015036	-	99	69.880	Otolemur_garnettii
ENSHCOG00000018606	sbds	100	81.124	ENSOGAG00000009011	-	99	81.124	Otolemur_garnettii
ENSHCOG00000018606	sbds	100	81.526	ENSOARG00000010609	SBDS	99	81.526	Ovis_aries
ENSHCOG00000018606	sbds	100	80.723	ENSPPAG00000043889	-	99	80.723	Pan_paniscus
ENSHCOG00000018606	sbds	100	81.928	ENSPPRG00000002307	SBDS	99	81.928	Panthera_pardus
ENSHCOG00000018606	sbds	100	81.928	ENSPTIG00000021308	SBDS	99	81.928	Panthera_tigris_altaica
ENSHCOG00000018606	sbds	100	68.273	ENSPTRG00000047744	-	99	68.273	Pan_troglodytes
ENSHCOG00000018606	sbds	100	68.273	ENSPTRG00000050835	-	99	68.273	Pan_troglodytes
ENSHCOG00000018606	sbds	100	81.526	ENSPTRG00000019254	SBDS	99	81.526	Pan_troglodytes
ENSHCOG00000018606	sbds	86	79.545	ENSPTRG00000048174	-	98	79.545	Pan_troglodytes
ENSHCOG00000018606	sbds	100	81.928	ENSPANG00000004078	SBDS	99	81.928	Papio_anubis
ENSHCOG00000018606	sbds	100	87.952	ENSPKIG00000006489	sbds	99	87.952	Paramormyrops_kingsleyae
ENSHCOG00000018606	sbds	83	81.643	ENSPSIG00000014603	SBDS	99	81.643	Pelodiscus_sinensis
ENSHCOG00000018606	sbds	100	90.763	ENSPMGG00000004246	sbds	100	90.763	Periophthalmus_magnuspinnatus
ENSHCOG00000018606	sbds	100	81.928	ENSPEMG00000008728	Sbds	99	81.928	Peromyscus_maniculatus_bairdii
ENSHCOG00000018606	sbds	100	81.526	ENSPCIG00000029718	SBDS	99	81.526	Phascolarctos_cinereus
ENSHCOG00000018606	sbds	100	87.550	ENSPFOG00000015837	sbds	100	87.550	Poecilia_formosa
ENSHCOG00000018606	sbds	100	87.952	ENSPLAG00000003641	sbds	100	87.952	Poecilia_latipinna
ENSHCOG00000018606	sbds	100	87.550	ENSPMEG00000019483	sbds	100	87.550	Poecilia_mexicana
ENSHCOG00000018606	sbds	100	87.550	ENSPREG00000018758	sbds	100	87.550	Poecilia_reticulata
ENSHCOG00000018606	sbds	100	81.526	ENSPPYG00000017513	SBDS	99	81.526	Pongo_abelii
ENSHCOG00000018606	sbds	100	81.526	ENSPCOG00000021098	SBDS	99	81.526	Propithecus_coquereli
ENSHCOG00000018606	sbds	100	81.928	ENSPVAG00000009369	SBDS	99	81.928	Pteropus_vampyrus
ENSHCOG00000018606	sbds	100	89.960	ENSPNYG00000022403	sbds	100	89.960	Pundamilia_nyererei
ENSHCOG00000018606	sbds	100	87.149	ENSPNAG00000001120	sbds	99	87.149	Pygocentrus_nattereri
ENSHCOG00000018606	sbds	100	81.526	ENSRNOG00000000888	Sbds	99	81.526	Rattus_norvegicus
ENSHCOG00000018606	sbds	100	81.526	ENSRBIG00000035557	SBDS	99	81.526	Rhinopithecus_bieti
ENSHCOG00000018606	sbds	100	67.871	ENSRROG00000041986	-	99	67.871	Rhinopithecus_roxellana
ENSHCOG00000018606	sbds	100	81.526	ENSRROG00000040842	-	99	81.526	Rhinopithecus_roxellana
ENSHCOG00000018606	sbds	96	43.089	YLR022C	-	96	43.089	Saccharomyces_cerevisiae
ENSHCOG00000018606	sbds	93	79.654	ENSSBOG00000022460	SBDS	99	79.654	Saimiri_boliviensis_boliviensis
ENSHCOG00000018606	sbds	100	70.281	ENSSHAG00000010263	SBDS	99	70.281	Sarcophilus_harrisii
ENSHCOG00000018606	sbds	100	87.952	ENSSFOG00015001108	sbds	99	87.952	Scleropages_formosus
ENSHCOG00000018606	sbds	100	89.157	ENSSMAG00000020506	sbds	100	89.157	Scophthalmus_maximus
ENSHCOG00000018606	sbds	100	90.361	ENSSDUG00000001528	sbds	100	90.361	Seriola_dumerili
ENSHCOG00000018606	sbds	100	89.960	ENSSLDG00000003659	sbds	100	89.960	Seriola_lalandi_dorsalis
ENSHCOG00000018606	sbds	61	86.928	ENSSARG00000013132	-	100	86.928	Sorex_araneus
ENSHCOG00000018606	sbds	73	88.372	ENSSARG00000001899	-	73	88.372	Sorex_araneus
ENSHCOG00000018606	sbds	100	80.723	ENSSPUG00000002699	SBDS	99	80.723	Sphenodon_punctatus
ENSHCOG00000018606	sbds	100	91.566	ENSSPAG00000016419	sbds	100	84.000	Stegastes_partitus
ENSHCOG00000018606	sbds	100	81.526	ENSSSCG00000007732	SBDS	99	81.526	Sus_scrofa
ENSHCOG00000018606	sbds	66	81.707	ENSTGUG00000003426	SBDS	99	81.707	Taeniopygia_guttata
ENSHCOG00000018606	sbds	100	90.763	ENSTRUG00000021443	sbds	100	90.763	Takifugu_rubripes
ENSHCOG00000018606	sbds	100	89.960	ENSTNIG00000019000	sbds	100	89.960	Tetraodon_nigroviridis
ENSHCOG00000018606	sbds	84	70.673	ENSTBEG00000001178	SBDS	100	70.673	Tupaia_belangeri
ENSHCOG00000018606	sbds	100	63.052	ENSTTRG00000003921	SBDS	99	63.052	Tursiops_truncatus
ENSHCOG00000018606	sbds	100	82.329	ENSUAMG00000001326	SBDS	99	82.329	Ursus_americanus
ENSHCOG00000018606	sbds	100	82.329	ENSUMAG00000015353	SBDS	99	82.329	Ursus_maritimus
ENSHCOG00000018606	sbds	100	82.329	ENSVVUG00000016478	SBDS	99	82.329	Vulpes_vulpes
ENSHCOG00000018606	sbds	100	81.526	ENSXETG00000010093	sbds	99	81.526	Xenopus_tropicalis
ENSHCOG00000018606	sbds	100	79.920	ENSXCOG00000010639	sbds	100	79.920	Xiphophorus_couchianus
ENSHCOG00000018606	sbds	100	87.952	ENSXMAG00000006065	sbds	100	87.952	Xiphophorus_maculatus