EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000018663 (Gene tree)
Gene ID: -
Gene Symbol: snrpf
Alias: snrpfl
Full Name: small nuclear ribonucleoprotein polypeptide F
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 1530 bases
Position: chrKV880389.1:87429-88958
Accession: ZDB-GENE-040930-9
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000015111	LSM	PF01423.22	1.1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000022928	-	387	-	ENSHCOP00000015111	128 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000018663's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000018663's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000018663	snrpf	52	42.424	ENSHCOG00000005591	lsm6	74	42.424

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000018663	snrpf	55	85.714	ENSG00000139343	SNRPF	73	85.714	Homo_sapiens
ENSHCOG00000018663	snrpf	55	74.648	ENSAMEG00000018718	-	74	74.648	Ailuropoda_melanoleuca
ENSHCOG00000018663	snrpf	55	85.714	ENSAMEG00000002166	-	74	85.714	Ailuropoda_melanoleuca
ENSHCOG00000018663	snrpf	55	87.324	ENSACIG00000013216	snrpf	75	87.324	Amphilophus_citrinellus
ENSHCOG00000018663	snrpf	55	87.324	ENSAOCG00000015108	snrpf	75	87.324	Amphiprion_ocellaris
ENSHCOG00000018663	snrpf	55	87.324	ENSAPEG00000022022	snrpf	75	87.324	Amphiprion_percula
ENSHCOG00000018663	snrpf	55	88.571	ENSATEG00000022625	snrpf	68	88.571	Anabas_testudineus
ENSHCOG00000018663	snrpf	55	84.286	ENSACAG00000014073	SNRPF	72	84.286	Anolis_carolinensis
ENSHCOG00000018663	snrpf	55	60.000	ENSANAG00000025860	-	68	60.000	Aotus_nancymaae
ENSHCOG00000018663	snrpf	55	85.714	ENSANAG00000032845	SNRPF	73	85.714	Aotus_nancymaae
ENSHCOG00000018663	snrpf	53	77.941	ENSANAG00000020297	-	56	77.941	Aotus_nancymaae
ENSHCOG00000018663	snrpf	55	87.324	ENSACLG00000016066	snrpf	75	87.324	Astatotilapia_calliptera
ENSHCOG00000018663	snrpf	54	86.957	ENSAMXG00000007421	snrpf	73	86.957	Astyanax_mexicanus
ENSHCOG00000018663	snrpf	55	78.571	ENSBTAG00000050012	-	78	78.571	Bos_taurus
ENSHCOG00000018663	snrpf	55	85.714	ENSBTAG00000016271	SNRPF	73	85.714	Bos_taurus
ENSHCOG00000018663	snrpf	54	65.217	WBGene00004918	snr-5	73	65.217	Caenorhabditis_elegans
ENSHCOG00000018663	snrpf	55	85.714	ENSCJAG00000002705	-	73	85.714	Callithrix_jacchus
ENSHCOG00000018663	snrpf	55	80.000	ENSCAFG00000031151	-	73	80.000	Canis_familiaris
ENSHCOG00000018663	snrpf	55	85.714	ENSCAFG00000006395	-	57	85.714	Canis_familiaris
ENSHCOG00000018663	snrpf	52	83.582	ENSCAFG00020013161	-	64	83.582	Canis_lupus_dingo
ENSHCOG00000018663	snrpf	55	80.000	ENSCAFG00020010823	-	73	80.000	Canis_lupus_dingo
ENSHCOG00000018663	snrpf	55	81.429	ENSTSYG00000036502	-	73	81.429	Carlito_syrichta
ENSHCOG00000018663	snrpf	55	72.857	ENSTSYG00000030635	-	72	72.857	Carlito_syrichta
ENSHCOG00000018663	snrpf	56	80.556	ENSTSYG00000031636	-	55	80.556	Carlito_syrichta
ENSHCOG00000018663	snrpf	55	85.714	ENSCAPG00000007242	SNRPF	74	85.714	Cavia_aperea
ENSHCOG00000018663	snrpf	55	85.714	ENSCPOG00000013898	SNRPF	73	85.714	Cavia_porcellus
ENSHCOG00000018663	snrpf	55	78.571	ENSCCAG00000033627	-	50	78.571	Cebus_capucinus
ENSHCOG00000018663	snrpf	55	85.714	ENSCCAG00000037378	-	73	85.714	Cebus_capucinus
ENSHCOG00000018663	snrpf	55	85.714	ENSCCAG00000017356	-	73	85.714	Cebus_capucinus
ENSHCOG00000018663	snrpf	55	85.714	ENSCLAG00000007200	SNRPF	73	85.714	Chinchilla_lanigera
ENSHCOG00000018663	snrpf	58	82.432	ENSCSAG00000003602	-	54	82.432	Chlorocebus_sabaeus
ENSHCOG00000018663	snrpf	54	85.507	ENSCHOG00000009392	SNRPF	97	85.507	Choloepus_hoffmanni
ENSHCOG00000018663	snrpf	54	78.261	ENSCPBG00000001985	-	74	78.261	Chrysemys_picta_bellii
ENSHCOG00000018663	snrpf	55	77.143	ENSCPBG00000026463	-	73	77.143	Chrysemys_picta_bellii
ENSHCOG00000018663	snrpf	55	78.571	ENSCPBG00000006227	-	73	78.571	Chrysemys_picta_bellii
ENSHCOG00000018663	snrpf	61	76.923	ENSCPBG00000024287	-	57	76.923	Chrysemys_picta_bellii
ENSHCOG00000018663	snrpf	55	81.429	ENSCSAVG00000007498	-	72	81.429	Ciona_savignyi
ENSHCOG00000018663	snrpf	55	85.714	ENSCGRG00001017100	-	73	85.714	Cricetulus_griseus_chok1gshd
ENSHCOG00000018663	snrpf	55	77.465	ENSCGRG00000018878	-	80	77.465	Cricetulus_griseus_crigri
ENSHCOG00000018663	snrpf	55	85.714	ENSCGRG00000000336	-	73	85.714	Cricetulus_griseus_crigri
ENSHCOG00000018663	snrpf	55	87.143	ENSCSEG00000004748	snrpf	73	87.143	Cynoglossus_semilaevis
ENSHCOG00000018663	snrpf	55	88.571	ENSCVAG00000000397	snrpf	50	88.571	Cyprinodon_variegatus
ENSHCOG00000018663	snrpf	55	86.111	ENSDARG00000105037	snrpf	74	86.111	Danio_rerio
ENSHCOG00000018663	snrpf	55	84.286	ENSDNOG00000048989	-	56	84.286	Dasypus_novemcinctus
ENSHCOG00000018663	snrpf	54	76.812	ENSDNOG00000049373	-	54	76.812	Dasypus_novemcinctus
ENSHCOG00000018663	snrpf	55	75.714	ENSDORG00000025351	-	88	75.714	Dipodomys_ordii
ENSHCOG00000018663	snrpf	55	71.429	FBgn0000426	SmF	72	71.429	Drosophila_melanogaster
ENSHCOG00000018663	snrpf	55	85.714	ENSETEG00000001558	-	73	85.714	Echinops_telfairi
ENSHCOG00000018663	snrpf	75	64.286	ENSEBUG00000001793	-	97	64.286	Eptatretus_burgeri
ENSHCOG00000018663	snrpf	55	85.714	ENSECAG00000019817	SNRPF	51	85.714	Equus_caballus
ENSHCOG00000018663	snrpf	55	85.714	ENSEEUG00000013509	SNRPF	74	85.714	Erinaceus_europaeus
ENSHCOG00000018663	snrpf	55	85.714	ENSELUG00000007737	RUXF	72	85.714	Esox_lucius
ENSHCOG00000018663	snrpf	55	85.714	ENSELUG00000003121	RUXF	73	85.714	Esox_lucius
ENSHCOG00000018663	snrpf	53	66.176	ENSFCAG00000021942	-	74	66.176	Felis_catus
ENSHCOG00000018663	snrpf	56	61.111	ENSFCAG00000031148	-	60	61.111	Felis_catus
ENSHCOG00000018663	snrpf	55	85.714	ENSFCAG00000029966	-	73	85.714	Felis_catus
ENSHCOG00000018663	snrpf	55	85.714	ENSFALG00000010799	SNRPF	73	85.714	Ficedula_albicollis
ENSHCOG00000018663	snrpf	55	85.714	ENSFDAG00000002831	-	73	85.714	Fukomys_damarensis
ENSHCOG00000018663	snrpf	55	88.571	ENSFHEG00000003240	snrpf	55	88.571	Fundulus_heteroclitus
ENSHCOG00000018663	snrpf	55	88.571	ENSGMOG00000007741	snrpf	74	88.571	Gadus_morhua
ENSHCOG00000018663	snrpf	55	85.714	ENSGALG00000011409	SNRPF	73	85.714	Gallus_gallus
ENSHCOG00000018663	snrpf	55	88.732	ENSGAFG00000016187	snrpf	74	88.732	Gambusia_affinis
ENSHCOG00000018663	snrpf	55	87.143	ENSGACG00000020055	snrpf	74	87.143	Gasterosteus_aculeatus
ENSHCOG00000018663	snrpf	55	77.465	ENSGAGG00000022991	-	74	77.465	Gopherus_agassizii
ENSHCOG00000018663	snrpf	61	70.513	ENSGAGG00000014132	-	88	68.750	Gopherus_agassizii
ENSHCOG00000018663	snrpf	59	73.333	ENSGAGG00000020974	-	57	73.333	Gopherus_agassizii
ENSHCOG00000018663	snrpf	55	85.714	ENSGGOG00000001127	-	75	84.507	Gorilla_gorilla
ENSHCOG00000018663	snrpf	55	62.857	ENSGGOG00000039936	-	68	62.857	Gorilla_gorilla
ENSHCOG00000018663	snrpf	55	60.000	ENSGGOG00000039564	-	74	60.000	Gorilla_gorilla
ENSHCOG00000018663	snrpf	55	85.714	ENSHGLG00000009108	SNRPF	73	85.714	Heterocephalus_glaber_female
ENSHCOG00000018663	snrpf	55	84.286	ENSHGLG00000021172	-	73	84.286	Heterocephalus_glaber_female
ENSHCOG00000018663	snrpf	55	85.714	ENSHGLG00100008103	-	74	85.714	Heterocephalus_glaber_male
ENSHCOG00000018663	snrpf	55	84.286	ENSHGLG00100019596	-	73	84.286	Heterocephalus_glaber_male
ENSHCOG00000018663	snrpf	55	88.571	ENSIPUG00000018994	snrpf	75	87.324	Ictalurus_punctatus
ENSHCOG00000018663	snrpf	55	85.714	ENSSTOG00000010434	-	73	85.714	Ictidomys_tridecemlineatus
ENSHCOG00000018663	snrpf	55	74.286	ENSJJAG00000010502	-	75	74.286	Jaculus_jaculus
ENSHCOG00000018663	snrpf	55	67.143	ENSJJAG00000004558	-	75	67.143	Jaculus_jaculus
ENSHCOG00000018663	snrpf	55	85.915	ENSJJAG00000011272	-	74	85.915	Jaculus_jaculus
ENSHCOG00000018663	snrpf	55	87.324	ENSKMAG00000013566	snrpf	74	87.324	Kryptolebias_marmoratus
ENSHCOG00000018663	snrpf	55	87.143	ENSLBEG00000008800	snrpf	73	87.143	Labrus_bergylta
ENSHCOG00000018663	snrpf	55	85.714	ENSLACG00000002456	-	54	85.714	Latimeria_chalumnae
ENSHCOG00000018663	snrpf	55	85.714	ENSLOCG00000015744	snrpf	73	85.714	Lepisosteus_oculatus
ENSHCOG00000018663	snrpf	55	85.714	ENSLAFG00000017426	SNRPF	73	85.714	Loxodonta_africana
ENSHCOG00000018663	snrpf	55	85.915	ENSMAMG00000016593	snrpf	75	85.915	Mastacembelus_armatus
ENSHCOG00000018663	snrpf	55	87.324	ENSMZEG00005014701	snrpf	75	87.324	Maylandia_zebra
ENSHCOG00000018663	snrpf	55	85.714	ENSMGAG00000011453	-	57	85.714	Meleagris_gallopavo
ENSHCOG00000018663	snrpf	55	81.429	ENSMAUG00000008799	-	73	81.429	Mesocricetus_auratus
ENSHCOG00000018663	snrpf	54	59.420	ENSMAUG00000010289	-	72	59.420	Mesocricetus_auratus
ENSHCOG00000018663	snrpf	55	85.714	ENSMICG00000012153	-	73	85.714	Microcebus_murinus
ENSHCOG00000018663	snrpf	58	77.027	ENSMICG00000030494	-	54	77.027	Microcebus_murinus
ENSHCOG00000018663	snrpf	51	70.769	ENSMOCG00000020220	-	74	70.769	Microtus_ochrogaster
ENSHCOG00000018663	snrpf	55	75.714	ENSMOCG00000022166	-	69	75.714	Microtus_ochrogaster
ENSHCOG00000018663	snrpf	55	85.714	ENSMOCG00000020437	Snrpf	73	85.714	Microtus_ochrogaster
ENSHCOG00000018663	snrpf	54	88.406	ENSMMOG00000007127	snrpf	74	88.406	Mola_mola
ENSHCOG00000018663	snrpf	59	81.579	ENSMODG00000008091	SNRPF	61	81.579	Monodelphis_domestica
ENSHCOG00000018663	snrpf	55	87.324	ENSMALG00000012328	snrpf	75	87.324	Monopterus_albus
ENSHCOG00000018663	snrpf	55	85.714	MGP_CAROLIEiJ_G0015735	-	73	85.714	Mus_caroli
ENSHCOG00000018663	snrpf	55	85.714	ENSMUSG00000020018	Snrpf	73	85.714	Mus_musculus
ENSHCOG00000018663	snrpf	55	85.714	MGP_PahariEiJ_G0031350	Snrpf	73	85.714	Mus_pahari
ENSHCOG00000018663	snrpf	55	85.714	MGP_SPRETEiJ_G0016553	Snrpf	73	85.714	Mus_spretus
ENSHCOG00000018663	snrpf	55	85.714	ENSMPUG00000007176	-	56	85.714	Mustela_putorius_furo
ENSHCOG00000018663	snrpf	55	85.714	ENSMLUG00000013577	-	74	85.714	Myotis_lucifugus
ENSHCOG00000018663	snrpf	55	70.000	ENSMLUG00000026269	-	59	70.000	Myotis_lucifugus
ENSHCOG00000018663	snrpf	55	85.714	ENSMLUG00000029201	-	59	85.714	Myotis_lucifugus
ENSHCOG00000018663	snrpf	55	85.714	ENSMLUG00000027932	-	59	85.714	Myotis_lucifugus
ENSHCOG00000018663	snrpf	55	85.714	ENSMLUG00000026149	-	59	85.714	Myotis_lucifugus
ENSHCOG00000018663	snrpf	55	85.714	ENSNGAG00000024292	-	73	85.714	Nannospalax_galili
ENSHCOG00000018663	snrpf	55	88.571	ENSNBRG00000011682	snrpf	64	88.571	Neolamprologus_brichardi
ENSHCOG00000018663	snrpf	55	85.714	ENSODEG00000010328	-	75	84.507	Octodon_degus
ENSHCOG00000018663	snrpf	55	85.714	ENSOCUG00000010925	SNRPF	56	85.714	Oryctolagus_cuniculus
ENSHCOG00000018663	snrpf	54	86.957	ENSORLG00020008216	snrpf	74	86.957	Oryzias_latipes_hni
ENSHCOG00000018663	snrpf	54	86.957	ENSORLG00015007418	snrpf	74	86.957	Oryzias_latipes_hsok
ENSHCOG00000018663	snrpf	55	85.915	ENSOMEG00000003018	snrpf	75	85.915	Oryzias_melastigma
ENSHCOG00000018663	snrpf	55	84.286	ENSOGAG00000030323	-	73	84.286	Otolemur_garnettii
ENSHCOG00000018663	snrpf	55	85.714	ENSOARG00000011853	-	55	85.714	Ovis_aries
ENSHCOG00000018663	snrpf	55	62.857	ENSPPAG00000037544	-	68	62.857	Pan_paniscus
ENSHCOG00000018663	snrpf	55	60.000	ENSPPAG00000037479	-	74	60.000	Pan_paniscus
ENSHCOG00000018663	snrpf	55	85.714	ENSPPRG00000005875	-	73	85.714	Panthera_pardus
ENSHCOG00000018663	snrpf	53	63.235	ENSPPRG00000007449	-	62	63.235	Panthera_pardus
ENSHCOG00000018663	snrpf	53	63.235	ENSPTIG00000005117	-	73	63.235	Panthera_tigris_altaica
ENSHCOG00000018663	snrpf	55	85.714	ENSPTIG00000007520	SNRPF	73	85.714	Panthera_tigris_altaica
ENSHCOG00000018663	snrpf	55	60.000	ENSPTRG00000047717	-	74	60.000	Pan_troglodytes
ENSHCOG00000018663	snrpf	55	62.857	ENSPTRG00000043814	-	68	62.857	Pan_troglodytes
ENSHCOG00000018663	snrpf	55	88.571	ENSPKIG00000014784	snrpf	69	88.571	Paramormyrops_kingsleyae
ENSHCOG00000018663	snrpf	55	85.714	ENSPSIG00000016462	SNRPF	73	85.714	Pelodiscus_sinensis
ENSHCOG00000018663	snrpf	54	88.406	ENSPMGG00000023548	snrpf	74	88.406	Periophthalmus_magnuspinnatus
ENSHCOG00000018663	snrpf	55	85.714	ENSPEMG00000023326	Snrpf	73	85.714	Peromyscus_maniculatus_bairdii
ENSHCOG00000018663	snrpf	55	87.324	ENSPLAG00000023932	snrpf	75	87.324	Poecilia_latipinna
ENSHCOG00000018663	snrpf	55	87.324	ENSPMEG00000003377	snrpf	75	87.324	Poecilia_mexicana
ENSHCOG00000018663	snrpf	56	86.111	ENSPREG00000022635	snrpf	75	86.111	Poecilia_reticulata
ENSHCOG00000018663	snrpf	55	85.714	ENSPPYG00000004847	-	73	85.714	Pongo_abelii
ENSHCOG00000018663	snrpf	55	85.714	ENSPCOG00000023833	-	73	85.714	Propithecus_coquereli
ENSHCOG00000018663	snrpf	55	85.714	ENSPVAG00000009036	SNRPF	73	85.714	Pteropus_vampyrus
ENSHCOG00000018663	snrpf	55	87.324	ENSPNYG00000021712	snrpf	75	87.324	Pundamilia_nyererei
ENSHCOG00000018663	snrpf	55	85.915	ENSPNAG00000019117	snrpf	75	85.915	Pygocentrus_nattereri
ENSHCOG00000018663	snrpf	55	85.714	ENSRNOG00000005556	Snrpf	73	85.714	Rattus_norvegicus
ENSHCOG00000018663	snrpf	55	82.857	ENSRBIG00000030414	-	73	82.857	Rhinopithecus_bieti
ENSHCOG00000018663	snrpf	55	82.857	ENSRROG00000021975	-	73	82.857	Rhinopithecus_roxellana
ENSHCOG00000018663	snrpf	59	46.753	YPR182W	SMX3	81	46.753	Saccharomyces_cerevisiae
ENSHCOG00000018663	snrpf	55	85.714	ENSSBOG00000036179	-	73	85.714	Saimiri_boliviensis_boliviensis
ENSHCOG00000018663	snrpf	56	68.056	ENSSBOG00000027638	-	75	68.919	Saimiri_boliviensis_boliviensis
ENSHCOG00000018663	snrpf	55	72.857	ENSSBOG00000032297	-	71	72.857	Saimiri_boliviensis_boliviensis
ENSHCOG00000018663	snrpf	55	85.714	ENSSBOG00000012868	-	73	85.714	Saimiri_boliviensis_boliviensis
ENSHCOG00000018663	snrpf	59	82.895	ENSSHAG00000012294	SNRPF	62	82.895	Sarcophilus_harrisii
ENSHCOG00000018663	snrpf	55	88.571	ENSSFOG00015021523	snrpf	94	88.571	Scleropages_formosus
ENSHCOG00000018663	snrpf	55	87.143	ENSSMAG00000005533	snrpf	72	87.143	Scophthalmus_maximus
ENSHCOG00000018663	snrpf	59	84.211	ENSSDUG00000016283	snrpf	82	84.211	Seriola_dumerili
ENSHCOG00000018663	snrpf	55	67.143	ENSSLDG00000003885	-	77	67.143	Seriola_lalandi_dorsalis
ENSHCOG00000018663	snrpf	55	88.571	ENSSLDG00000005119	snrpf	73	88.571	Seriola_lalandi_dorsalis
ENSHCOG00000018663	snrpf	55	84.507	ENSSPUG00000014590	-	75	84.507	Sphenodon_punctatus
ENSHCOG00000018663	snrpf	55	88.571	ENSSPAG00000003283	snrpf	72	88.571	Stegastes_partitus
ENSHCOG00000018663	snrpf	55	85.714	ENSSSCG00000000895	SNRPF	73	85.714	Sus_scrofa
ENSHCOG00000018663	snrpf	55	87.143	ENSTNIG00000012672	snrpf	73	87.143	Tetraodon_nigroviridis
ENSHCOG00000018663	snrpf	55	76.056	ENSUAMG00000001101	-	75	76.056	Ursus_americanus
ENSHCOG00000018663	snrpf	55	85.714	ENSUAMG00000008176	-	81	85.714	Ursus_americanus
ENSHCOG00000018663	snrpf	55	76.056	ENSUMAG00000006177	-	75	76.056	Ursus_maritimus
ENSHCOG00000018663	snrpf	55	85.714	ENSUMAG00000003528	-	77	85.714	Ursus_maritimus
ENSHCOG00000018663	snrpf	55	85.714	ENSVPAG00000008712	-	73	85.714	Vicugna_pacos
ENSHCOG00000018663	snrpf	55	78.571	ENSVVUG00000023821	-	81	78.571	Vulpes_vulpes
ENSHCOG00000018663	snrpf	56	87.500	ENSXCOG00000013860	snrpf	75	87.500	Xiphophorus_couchianus
ENSHCOG00000018663	snrpf	55	87.324	ENSXMAG00000015448	snrpf	75	87.324	Xiphophorus_maculatus