EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000018683 (Gene tree)
Gene ID: -
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 16809 bases
Position: chrKV880399.1:255973-272781
Accession: 109530785
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000027101	Npa1	PF11707.8	1.2e-75	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000022902	-	4548	XM_019894679	ENSHCOP00000027101	1516 (aa)	XP_019750238	-

Gene Model

Click here to download ENSHCOG00000018683's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000018683's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000018683	urb1	97	48.141	ENSG00000142207	URB1	74	47.750	Homo_sapiens
ENSHCOG00000018683	urb1	99	79.310	ENSAPOG00000020308	urb1	74	79.310	Acanthochromis_polyacanthus
ENSHCOG00000018683	urb1	97	52.998	ENSAMEG00000011998	URB1	71	52.031	Ailuropoda_melanoleuca
ENSHCOG00000018683	urb1	95	69.792	ENSACIG00000003248	urb1	74	69.583	Amphilophus_citrinellus
ENSHCOG00000018683	urb1	98	67.622	ENSAOCG00000010364	urb1	78	67.742	Amphiprion_ocellaris
ENSHCOG00000018683	urb1	98	74.319	ENSAPEG00000010758	urb1	77	74.319	Amphiprion_percula
ENSHCOG00000018683	urb1	98	71.747	ENSATEG00000011790	urb1	71	71.747	Anabas_testudineus
ENSHCOG00000018683	urb1	94	57.620	ENSAPLG00000012791	URB1	69	57.411	Anas_platyrhynchos
ENSHCOG00000018683	urb1	97	52.574	ENSACAG00000002817	URB1	70	52.574	Anolis_carolinensis
ENSHCOG00000018683	urb1	96	53.800	ENSANAG00000024617	URB1	71	52.907	Aotus_nancymaae
ENSHCOG00000018683	urb1	99	71.456	ENSACLG00000024865	urb1	74	77.419	Astatotilapia_calliptera
ENSHCOG00000018683	urb1	98	59.459	ENSAMXG00000012306	urb1	70	58.880	Astyanax_mexicanus
ENSHCOG00000018683	urb1	98	52.838	ENSBTAG00000012412	URB1	70	52.055	Bos_taurus
ENSHCOG00000018683	urb1	97	48.337	ENSCJAG00000009118	URB1	74	48.141	Callithrix_jacchus
ENSHCOG00000018683	urb1	97	52.805	ENSCAFG00000008892	URB1	69	51.838	Canis_familiaris
ENSHCOG00000018683	urb1	97	52.805	ENSCAFG00020025994	-	69	51.838	Canis_lupus_dingo
ENSHCOG00000018683	urb1	97	52.519	ENSCAFG00020025987	-	69	51.550	Canis_lupus_dingo
ENSHCOG00000018683	urb1	99	47.018	ENSCHIG00000015645	URB1	73	46.316	Capra_hircus
ENSHCOG00000018683	urb1	96	47.656	ENSTSYG00000013286	URB1	72	47.070	Carlito_syrichta
ENSHCOG00000018683	urb1	94	51.087	ENSCAPG00000015589	URB1	67	50.870	Cavia_aperea
ENSHCOG00000018683	urb1	96	53.191	ENSCPOG00000006748	URB1	69	52.611	Cavia_porcellus
ENSHCOG00000018683	urb1	96	47.945	ENSCCAG00000021299	URB1	72	47.750	Cebus_capucinus
ENSHCOG00000018683	urb1	97	48.431	ENSCATG00000042630	URB1	74	48.039	Cercocebus_atys
ENSHCOG00000018683	urb1	97	52.529	ENSCLAG00000005262	URB1	70	51.946	Chinchilla_lanigera
ENSHCOG00000018683	urb1	97	48.431	ENSCSAG00000009584	URB1	74	48.039	Chlorocebus_sabaeus
ENSHCOG00000018683	urb1	98	55.218	ENSCPBG00000006454	URB1	70	55.218	Chrysemys_picta_bellii
ENSHCOG00000018683	urb1	97	48.039	ENSCANG00000031088	URB1	74	47.647	Colobus_angolensis_palliatus
ENSHCOG00000018683	urb1	95	51.411	ENSCGRG00001010616	Urb1	69	50.097	Cricetulus_griseus_chok1gshd
ENSHCOG00000018683	urb1	94	52.431	ENSCGRG00000015840	Urb1	68	52.008	Cricetulus_griseus_crigri
ENSHCOG00000018683	urb1	98	68.165	ENSCSEG00000012616	urb1	75	65.274	Cynoglossus_semilaevis
ENSHCOG00000018683	urb1	94	63.232	ENSCVAG00000009076	urb1	89	62.998	Cyprinodon_variegatus
ENSHCOG00000018683	urb1	99	61.818	ENSDARG00000060308	urb1	74	59.381	Danio_rerio
ENSHCOG00000018683	urb1	97	53.191	ENSDNOG00000015586	URB1	84	52.805	Dasypus_novemcinctus
ENSHCOG00000018683	urb1	97	53.414	ENSDORG00000006735	Urb1	69	52.811	Dipodomys_ordii
ENSHCOG00000018683	urb1	94	50.775	ENSETEG00000009080	URB1	67	50.000	Echinops_telfairi
ENSHCOG00000018683	urb1	97	52.816	ENSEASG00005007711	URB1	74	52.047	Equus_asinus_asinus
ENSHCOG00000018683	urb1	97	52.418	ENSECAG00000013206	URB1	75	51.451	Equus_caballus
ENSHCOG00000018683	urb1	99	62.454	ENSELUG00000020516	urb1	75	59.453	Esox_lucius
ENSHCOG00000018683	urb1	96	47.568	ENSFCAG00000002177	URB1	71	46.856	Felis_catus
ENSHCOG00000018683	urb1	95	55.394	ENSFALG00000004636	URB1	69	54.979	Ficedula_albicollis
ENSHCOG00000018683	urb1	96	49.222	ENSFDAG00000007288	URB1	69	48.638	Fukomys_damarensis
ENSHCOG00000018683	urb1	99	63.514	ENSFHEG00000000202	urb1	66	69.545	Fundulus_heteroclitus
ENSHCOG00000018683	urb1	89	57.245	ENSGMOG00000001838	urb1	68	56.888	Gadus_morhua
ENSHCOG00000018683	urb1	97	55.094	ENSGALG00000015887	URB1	69	54.906	Gallus_gallus
ENSHCOG00000018683	urb1	99	62.451	ENSGAFG00000020694	urb1	81	60.038	Gambusia_affinis
ENSHCOG00000018683	urb1	97	67.118	ENSGACG00000011703	urb1	73	65.571	Gasterosteus_aculeatus
ENSHCOG00000018683	urb1	97	55.056	ENSGAGG00000022544	URB1	71	55.056	Gopherus_agassizii
ENSHCOG00000018683	urb1	97	48.337	ENSGGOG00000000285	URB1	74	47.945	Gorilla_gorilla
ENSHCOG00000018683	urb1	99	77.419	ENSHBUG00000001904	urb1	74	77.419	Haplochromis_burtoni
ENSHCOG00000018683	urb1	97	52.529	ENSHGLG00000004907	URB1	70	51.946	Heterocephalus_glaber_female
ENSHCOG00000018683	urb1	97	52.724	ENSHGLG00100010749	URB1	71	52.724	Heterocephalus_glaber_male
ENSHCOG00000018683	urb1	98	51.367	ENSIPUG00000014721	urb1	73	50.977	Ictalurus_punctatus
ENSHCOG00000018683	urb1	96	48.039	ENSSTOG00000004539	URB1	73	47.255	Ictidomys_tridecemlineatus
ENSHCOG00000018683	urb1	98	66.405	ENSKMAG00000006001	urb1	84	64.103	Kryptolebias_marmoratus
ENSHCOG00000018683	urb1	98	64.692	ENSLBEG00000027208	urb1	76	66.706	Labrus_bergylta
ENSHCOG00000018683	urb1	99	49.907	ENSLACG00000017059	URB1	75	49.165	Latimeria_chalumnae
ENSHCOG00000018683	urb1	98	64.706	ENSLOCG00000009190	urb1	70	64.706	Lepisosteus_oculatus
ENSHCOG00000018683	urb1	97	48.819	ENSLAFG00000010407	URB1	72	48.047	Loxodonta_africana
ENSHCOG00000018683	urb1	97	47.843	ENSMFAG00000034391	URB1	72	47.451	Macaca_fascicularis
ENSHCOG00000018683	urb1	97	47.843	ENSMMUG00000010295	URB1	74	47.451	Macaca_mulatta
ENSHCOG00000018683	urb1	96	52.800	ENSMNEG00000032981	URB1	71	51.751	Macaca_nemestrina
ENSHCOG00000018683	urb1	96	53.400	ENSMLEG00000041435	URB1	71	52.335	Mandrillus_leucophaeus
ENSHCOG00000018683	urb1	98	70.968	ENSMAMG00000011238	urb1	76	70.968	Mastacembelus_armatus
ENSHCOG00000018683	urb1	99	68.208	ENSMZEG00005011862	urb1	73	67.658	Maylandia_zebra
ENSHCOG00000018683	urb1	94	57.143	ENSMGAG00000014512	URB1	68	56.936	Meleagris_gallopavo
ENSHCOG00000018683	urb1	83	46.573	ENSMAUG00000010516	Urb1	68	45.968	Mesocricetus_auratus
ENSHCOG00000018683	urb1	97	48.824	ENSMICG00000016424	URB1	72	48.235	Microcebus_murinus
ENSHCOG00000018683	urb1	96	46.457	ENSMOCG00000012613	Urb1	71	46.260	Microtus_ochrogaster
ENSHCOG00000018683	urb1	97	52.437	ENSMODG00000021076	URB1	69	52.047	Monodelphis_domestica
ENSHCOG00000018683	urb1	99	68.712	ENSMALG00000017411	urb1	79	68.712	Monopterus_albus
ENSHCOG00000018683	urb1	97	51.823	MGP_CAROLIEiJ_G0020948	Urb1	70	51.248	Mus_caroli
ENSHCOG00000018683	urb1	97	47.093	ENSMUSG00000039929	Urb1	72	46.705	Mus_musculus
ENSHCOG00000018683	urb1	97	46.693	MGP_PahariEiJ_G0016653	Urb1	69	51.550	Mus_pahari
ENSHCOG00000018683	urb1	97	47.093	MGP_SPRETEiJ_G0021854	Urb1	72	46.705	Mus_spretus
ENSHCOG00000018683	urb1	97	53.191	ENSMPUG00000001123	URB1	72	52.031	Mustela_putorius_furo
ENSHCOG00000018683	urb1	96	48.575	ENSNGAG00000001905	Urb1	71	48.219	Nannospalax_galili
ENSHCOG00000018683	urb1	71	62.901	ENSNBRG00000001049	urb1	66	62.901	Neolamprologus_brichardi
ENSHCOG00000018683	urb1	93	47.750	ENSNLEG00000026872	URB1	72	47.358	Nomascus_leucogenys
ENSHCOG00000018683	urb1	87	55.636	ENSMEUG00000010828	URB1	67	44.671	Notamacropus_eugenii
ENSHCOG00000018683	urb1	95	47.059	ENSOPRG00000013482	URB1	71	46.247	Ochotona_princeps
ENSHCOG00000018683	urb1	98	49.027	ENSODEG00000002587	URB1	73	48.638	Octodon_degus
ENSHCOG00000018683	urb1	99	77.419	ENSONIG00000005599	urb1	74	77.419	Oreochromis_niloticus
ENSHCOG00000018683	urb1	97	51.938	ENSOCUG00000009381	URB1	70	51.357	Oryctolagus_cuniculus
ENSHCOG00000018683	urb1	98	70.787	ENSORLG00000003429	urb1	73	62.941	Oryzias_latipes
ENSHCOG00000018683	urb1	98	71.161	ENSORLG00020013785	urb1	73	62.745	Oryzias_latipes_hni
ENSHCOG00000018683	urb1	96	67.892	ENSORLG00015019421	urb1	73	67.311	Oryzias_latipes_hsok
ENSHCOG00000018683	urb1	92	66.627	ENSOMEG00000002094	urb1	92	66.510	Oryzias_melastigma
ENSHCOG00000018683	urb1	98	53.191	ENSOGAG00000017140	URB1	75	48.330	Otolemur_garnettii
ENSHCOG00000018683	urb1	87	47.961	ENSOARG00000013679	URB1	68	47.184	Ovis_aries
ENSHCOG00000018683	urb1	97	48.039	ENSPPAG00000003423	URB1	74	47.647	Pan_paniscus
ENSHCOG00000018683	urb1	96	47.393	ENSPPRG00000023131	URB1	71	46.682	Panthera_pardus
ENSHCOG00000018683	urb1	94	47.070	ENSPTIG00000016125	URB1	75	46.289	Panthera_tigris_altaica
ENSHCOG00000018683	urb1	97	48.039	ENSPTRG00000013852	URB1	74	47.647	Pan_troglodytes
ENSHCOG00000018683	urb1	97	48.431	ENSPANG00000021964	URB1	74	48.039	Papio_anubis
ENSHCOG00000018683	urb1	98	56.452	ENSPKIG00000003683	urb1	73	56.452	Paramormyrops_kingsleyae
ENSHCOG00000018683	urb1	97	46.080	ENSPEMG00000021205	Urb1	72	45.476	Peromyscus_maniculatus_bairdii
ENSHCOG00000018683	urb1	68	43.149	ENSPMAG00000009733	URB1	65	40.395	Petromyzon_marinus
ENSHCOG00000018683	urb1	97	51.569	ENSPCIG00000016350	URB1	71	51.176	Phascolarctos_cinereus
ENSHCOG00000018683	urb1	95	59.745	ENSPLAG00000004371	urb1	74	62.214	Poecilia_latipinna
ENSHCOG00000018683	urb1	99	61.027	ENSPMEG00000006634	urb1	74	60.819	Poecilia_mexicana
ENSHCOG00000018683	urb1	99	60.047	ENSPREG00000013453	urb1	75	59.930	Poecilia_reticulata
ENSHCOG00000018683	urb1	97	48.532	ENSPPYG00000011359	URB1	74	47.554	Pongo_abelii
ENSHCOG00000018683	urb1	97	43.494	ENSPCAG00000007430	URB1	74	43.494	Procavia_capensis
ENSHCOG00000018683	urb1	97	49.216	ENSPCOG00000022695	URB1	72	48.627	Propithecus_coquereli
ENSHCOG00000018683	urb1	99	48.227	ENSPVAG00000000889	URB1	73	48.109	Pteropus_vampyrus
ENSHCOG00000018683	urb1	99	70.874	ENSPNYG00000010589	urb1	76	70.680	Pundamilia_nyererei
ENSHCOG00000018683	urb1	98	58.915	ENSPNAG00000019324	urb1	74	59.038	Pygocentrus_nattereri
ENSHCOG00000018683	urb1	97	50.288	ENSRNOG00000002080	Urb1	69	50.096	Rattus_norvegicus
ENSHCOG00000018683	urb1	97	47.843	ENSRBIG00000033122	URB1	74	47.647	Rhinopithecus_bieti
ENSHCOG00000018683	urb1	98	47.094	ENSRROG00000040237	URB1	74	47.843	Rhinopithecus_roxellana
ENSHCOG00000018683	urb1	97	48.039	ENSSBOG00000027672	URB1	74	47.647	Saimiri_boliviensis_boliviensis
ENSHCOG00000018683	urb1	98	51.711	ENSSHAG00000005140	URB1	70	51.711	Sarcophilus_harrisii
ENSHCOG00000018683	urb1	98	64.740	ENSSFOG00015000339	urb1	76	64.547	Scleropages_formosus
ENSHCOG00000018683	urb1	98	75.723	ENSSMAG00000003782	urb1	70	75.191	Scophthalmus_maximus
ENSHCOG00000018683	urb1	98	76.493	ENSSDUG00000012313	urb1	72	76.493	Seriola_dumerili
ENSHCOG00000018683	urb1	98	75.723	ENSSLDG00000023179	urb1	72	75.723	Seriola_lalandi_dorsalis
ENSHCOG00000018683	urb1	98	56.180	ENSSPUG00000012447	URB1	71	56.180	Sphenodon_punctatus
ENSHCOG00000018683	urb1	98	68.605	ENSSPAG00000006325	urb1	79	67.683	Stegastes_partitus
ENSHCOG00000018683	urb1	98	53.452	ENSSSCG00000032024	URB1	71	52.465	Sus_scrofa
ENSHCOG00000018683	urb1	81	54.779	ENSTGUG00000013442	URB1	86	50.147	Taeniopygia_guttata
ENSHCOG00000018683	urb1	98	69.030	ENSTRUG00000009372	urb1	70	69.030	Takifugu_rubripes
ENSHCOG00000018683	urb1	97	62.573	ENSTNIG00000016277	urb1	75	61.429	Tetraodon_nigroviridis
ENSHCOG00000018683	urb1	78	47.688	ENSTBEG00000010044	URB1	54	47.734	Tupaia_belangeri
ENSHCOG00000018683	urb1	87	50.851	ENSTTRG00000007712	URB1	63	49.787	Tursiops_truncatus
ENSHCOG00000018683	urb1	99	52.418	ENSUAMG00000012231	URB1	72	51.451	Ursus_americanus
ENSHCOG00000018683	urb1	96	54.701	ENSUMAG00000017419	URB1	78	53.797	Ursus_maritimus
ENSHCOG00000018683	urb1	97	52.805	ENSVVUG00000000551	URB1	70	52.233	Vulpes_vulpes
ENSHCOG00000018683	urb1	98	54.613	ENSXETG00000009895	urb1	72	54.613	Xenopus_tropicalis
ENSHCOG00000018683	urb1	99	65.926	ENSXCOG00000005500	urb1	80	62.945	Xiphophorus_couchianus
ENSHCOG00000018683	urb1	99	66.296	ENSXMAG00000007253	urb1	79	63.420	Xiphophorus_maculatus