EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000019882 (Gene tree)
Gene ID: 109527401
Gene Symbol: exosc1
Alias: -
Full Name: exosome component 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 4259 bases
Position: chrKV880294.1:891993-896251
Accession: 109527401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000016170	EXOSC1	PF10447.9	6.9e-17	1	1
ENSHCOP00000016170	ECR1_N	PF14382.6	5.7e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000024275	-	1264	XM_019889323	ENSHCOP00000016170	194 (aa)	XP_019744882	UPI00094E2120

Gene Model

Click here to download ENSHCOG00000019882's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000019882's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000019882	exosc1	98	79.058	ENSG00000171311	EXOSC1	98	79.058	Homo_sapiens
ENSHCOG00000019882	exosc1	100	95.361	ENSAPOG00000007822	exosc1	100	95.361	Acanthochromis_polyacanthus
ENSHCOG00000019882	exosc1	98	79.581	ENSAMEG00000000129	EXOSC1	98	79.581	Ailuropoda_melanoleuca
ENSHCOG00000019882	exosc1	95	95.135	ENSACIG00000018956	exosc1	91	95.135	Amphilophus_citrinellus
ENSHCOG00000019882	exosc1	100	95.876	ENSAOCG00000010699	exosc1	100	95.876	Amphiprion_ocellaris
ENSHCOG00000019882	exosc1	93	85.000	ENSAPEG00000012690	exosc1	97	85.000	Amphiprion_percula
ENSHCOG00000019882	exosc1	100	95.361	ENSATEG00000018683	exosc1	100	95.361	Anabas_testudineus
ENSHCOG00000019882	exosc1	96	76.471	ENSACAG00000002101	EXOSC1	96	76.471	Anolis_carolinensis
ENSHCOG00000019882	exosc1	98	79.058	ENSANAG00000034669	EXOSC1	98	79.058	Aotus_nancymaae
ENSHCOG00000019882	exosc1	100	95.876	ENSACLG00000021243	exosc1	100	95.876	Astatotilapia_calliptera
ENSHCOG00000019882	exosc1	100	91.237	ENSAMXG00000011116	exosc1	100	91.237	Astyanax_mexicanus
ENSHCOG00000019882	exosc1	98	79.581	ENSBTAG00000012699	EXOSC1	98	79.581	Bos_taurus
ENSHCOG00000019882	exosc1	94	35.602	WBGene00012966	exos-1	92	35.602	Caenorhabditis_elegans
ENSHCOG00000019882	exosc1	98	78.534	ENSCJAG00000016586	EXOSC1	98	78.534	Callithrix_jacchus
ENSHCOG00000019882	exosc1	98	79.058	ENSCAFG00000009068	EXOSC1	92	79.058	Canis_familiaris
ENSHCOG00000019882	exosc1	98	79.058	ENSCAFG00020006002	EXOSC1	92	79.058	Canis_lupus_dingo
ENSHCOG00000019882	exosc1	98	79.581	ENSCHIG00000015253	EXOSC1	98	79.581	Capra_hircus
ENSHCOG00000019882	exosc1	98	78.010	ENSTSYG00000000760	EXOSC1	98	78.010	Carlito_syrichta
ENSHCOG00000019882	exosc1	98	79.058	ENSCPOG00000001173	EXOSC1	98	79.058	Cavia_porcellus
ENSHCOG00000019882	exosc1	98	41.969	ENSCCAG00000023986	EXOSC1	98	41.969	Cebus_capucinus
ENSHCOG00000019882	exosc1	98	79.058	ENSCATG00000034114	EXOSC1	98	79.058	Cercocebus_atys
ENSHCOG00000019882	exosc1	98	79.058	ENSCLAG00000002463	EXOSC1	98	79.058	Chinchilla_lanigera
ENSHCOG00000019882	exosc1	98	78.534	ENSCSAG00000005870	EXOSC1	98	78.534	Chlorocebus_sabaeus
ENSHCOG00000019882	exosc1	95	66.848	ENSCHOG00000006477	EXOSC1	98	66.848	Choloepus_hoffmanni
ENSHCOG00000019882	exosc1	55	68.224	ENSCPBG00000011949	EXOSC1	88	68.224	Chrysemys_picta_bellii
ENSHCOG00000019882	exosc1	99	50.777	ENSCING00000022734	-	92	50.777	Ciona_intestinalis
ENSHCOG00000019882	exosc1	99	53.368	ENSCSAVG00000010865	-	98	53.368	Ciona_savignyi
ENSHCOG00000019882	exosc1	98	79.058	ENSCANG00000034159	EXOSC1	98	79.058	Colobus_angolensis_palliatus
ENSHCOG00000019882	exosc1	98	78.010	ENSCGRG00001000335	Exosc1	98	78.010	Cricetulus_griseus_chok1gshd
ENSHCOG00000019882	exosc1	98	78.010	ENSCGRG00000011602	Exosc1	98	78.010	Cricetulus_griseus_crigri
ENSHCOG00000019882	exosc1	100	81.959	ENSCSEG00000007895	exosc1	97	81.959	Cynoglossus_semilaevis
ENSHCOG00000019882	exosc1	100	87.629	ENSCVAG00000016748	exosc1	100	87.629	Cyprinodon_variegatus
ENSHCOG00000019882	exosc1	100	91.753	ENSDARG00000059841	exosc1	100	91.753	Danio_rerio
ENSHCOG00000019882	exosc1	74	76.552	ENSDNOG00000007983	EXOSC1	98	76.552	Dasypus_novemcinctus
ENSHCOG00000019882	exosc1	98	78.534	ENSDORG00000016528	Exosc1	98	78.534	Dipodomys_ordii
ENSHCOG00000019882	exosc1	95	46.842	FBgn0032346	Csl4	92	46.842	Drosophila_melanogaster
ENSHCOG00000019882	exosc1	98	77.487	ENSETEG00000002469	-	98	77.487	Echinops_telfairi
ENSHCOG00000019882	exosc1	97	64.062	ENSEBUG00000008164	exosc1	96	64.062	Eptatretus_burgeri
ENSHCOG00000019882	exosc1	98	70.157	ENSEASG00005008684	EXOSC1	98	70.157	Equus_asinus_asinus
ENSHCOG00000019882	exosc1	60	56.897	ENSECAG00000010621	EXOSC1	69	56.897	Equus_caballus
ENSHCOG00000019882	exosc1	98	78.010	ENSEEUG00000005647	EXOSC1	98	78.010	Erinaceus_europaeus
ENSHCOG00000019882	exosc1	99	88.832	ENSELUG00000017369	exosc1	87	88.832	Esox_lucius
ENSHCOG00000019882	exosc1	98	79.581	ENSFCAG00000040563	EXOSC1	92	79.581	Felis_catus
ENSHCOG00000019882	exosc1	98	76.440	ENSFALG00000008450	EXOSC1	98	76.440	Ficedula_albicollis
ENSHCOG00000019882	exosc1	98	79.581	ENSFDAG00000000846	EXOSC1	98	79.581	Fukomys_damarensis
ENSHCOG00000019882	exosc1	100	87.113	ENSFHEG00000009154	exosc1	100	87.113	Fundulus_heteroclitus
ENSHCOG00000019882	exosc1	100	94.330	ENSGMOG00000008993	exosc1	100	94.330	Gadus_morhua
ENSHCOG00000019882	exosc1	98	63.874	ENSGALG00000039917	EXOSC1	99	82.069	Gallus_gallus
ENSHCOG00000019882	exosc1	100	87.629	ENSGAFG00000010265	exosc1	95	87.629	Gambusia_affinis
ENSHCOG00000019882	exosc1	100	91.753	ENSGACG00000018936	exosc1	100	91.753	Gasterosteus_aculeatus
ENSHCOG00000019882	exosc1	98	75.916	ENSGAGG00000019192	EXOSC1	98	75.916	Gopherus_agassizii
ENSHCOG00000019882	exosc1	98	68.063	ENSGGOG00000003099	EXOSC1	98	68.063	Gorilla_gorilla
ENSHCOG00000019882	exosc1	100	95.876	ENSHBUG00000017857	exosc1	100	95.876	Haplochromis_burtoni
ENSHCOG00000019882	exosc1	98	79.058	ENSHGLG00000016927	EXOSC1	98	79.058	Heterocephalus_glaber_female
ENSHCOG00000019882	exosc1	98	79.058	ENSHGLG00100012208	EXOSC1	98	79.058	Heterocephalus_glaber_male
ENSHCOG00000019882	exosc1	100	90.206	ENSIPUG00000007685	exosc1	100	90.206	Ictalurus_punctatus
ENSHCOG00000019882	exosc1	61	64.706	ENSSTOG00000029860	-	91	64.706	Ictidomys_tridecemlineatus
ENSHCOG00000019882	exosc1	98	78.534	ENSSTOG00000006615	EXOSC1	98	78.534	Ictidomys_tridecemlineatus
ENSHCOG00000019882	exosc1	98	79.058	ENSJJAG00000013311	Exosc1	98	79.058	Jaculus_jaculus
ENSHCOG00000019882	exosc1	100	91.753	ENSKMAG00000001202	exosc1	82	91.753	Kryptolebias_marmoratus
ENSHCOG00000019882	exosc1	100	94.845	ENSLBEG00000011448	exosc1	100	94.845	Labrus_bergylta
ENSHCOG00000019882	exosc1	100	63.500	ENSLOCG00000003776	exosc1	100	63.500	Lepisosteus_oculatus
ENSHCOG00000019882	exosc1	98	79.058	ENSLAFG00000015983	EXOSC1	98	79.058	Loxodonta_africana
ENSHCOG00000019882	exosc1	98	79.058	ENSMFAG00000001493	EXOSC1	98	79.058	Macaca_fascicularis
ENSHCOG00000019882	exosc1	98	79.058	ENSMMUG00000020028	EXOSC1	98	72.308	Macaca_mulatta
ENSHCOG00000019882	exosc1	98	79.058	ENSMNEG00000029816	EXOSC1	98	79.058	Macaca_nemestrina
ENSHCOG00000019882	exosc1	98	73.298	ENSMLEG00000027643	EXOSC1	98	73.298	Mandrillus_leucophaeus
ENSHCOG00000019882	exosc1	100	95.361	ENSMAMG00000012200	exosc1	100	95.361	Mastacembelus_armatus
ENSHCOG00000019882	exosc1	100	95.876	ENSMZEG00005007042	exosc1	100	95.876	Maylandia_zebra
ENSHCOG00000019882	exosc1	98	68.063	ENSMAUG00000020462	-	98	68.063	Mesocricetus_auratus
ENSHCOG00000019882	exosc1	98	79.058	ENSMICG00000007664	EXOSC1	91	79.058	Microcebus_murinus
ENSHCOG00000019882	exosc1	97	73.545	ENSMOCG00000017124	-	96	73.545	Microtus_ochrogaster
ENSHCOG00000019882	exosc1	98	78.010	ENSMOCG00000006004	-	98	78.010	Microtus_ochrogaster
ENSHCOG00000019882	exosc1	100	69.588	ENSMMOG00000021403	exosc1	100	69.588	Mola_mola
ENSHCOG00000019882	exosc1	98	79.688	ENSMODG00000004213	EXOSC1	98	79.688	Monodelphis_domestica
ENSHCOG00000019882	exosc1	95	94.595	ENSMALG00000007061	exosc1	93	94.595	Monopterus_albus
ENSHCOG00000019882	exosc1	98	77.487	MGP_CAROLIEiJ_G0022959	Exosc1	98	77.487	Mus_caroli
ENSHCOG00000019882	exosc1	98	77.487	ENSMUSG00000034321	Exosc1	98	77.487	Mus_musculus
ENSHCOG00000019882	exosc1	98	78.010	MGP_PahariEiJ_G0014449	Exosc1	98	78.010	Mus_pahari
ENSHCOG00000019882	exosc1	98	77.487	MGP_SPRETEiJ_G0023880	Exosc1	98	77.487	Mus_spretus
ENSHCOG00000019882	exosc1	98	79.581	ENSMPUG00000017044	EXOSC1	98	79.581	Mustela_putorius_furo
ENSHCOG00000019882	exosc1	98	79.058	ENSMLUG00000009228	EXOSC1	98	79.058	Myotis_lucifugus
ENSHCOG00000019882	exosc1	98	76.440	ENSNGAG00000022033	Exosc1	98	76.440	Nannospalax_galili
ENSHCOG00000019882	exosc1	100	74.742	ENSNBRG00000024007	exosc1	99	74.742	Neolamprologus_brichardi
ENSHCOG00000019882	exosc1	98	78.534	ENSNLEG00000013872	EXOSC1	98	78.534	Nomascus_leucogenys
ENSHCOG00000019882	exosc1	58	73.214	ENSMEUG00000002246	EXOSC1	97	73.214	Notamacropus_eugenii
ENSHCOG00000019882	exosc1	98	78.534	ENSOPRG00000005065	EXOSC1	98	78.534	Ochotona_princeps
ENSHCOG00000019882	exosc1	98	79.581	ENSODEG00000016709	EXOSC1	98	79.581	Octodon_degus
ENSHCOG00000019882	exosc1	100	95.876	ENSONIG00000017683	exosc1	99	95.876	Oreochromis_niloticus
ENSHCOG00000019882	exosc1	59	88.596	ENSOANG00000006563	EXOSC1	98	85.366	Ornithorhynchus_anatinus
ENSHCOG00000019882	exosc1	98	73.298	ENSOCUG00000026461	-	98	73.298	Oryctolagus_cuniculus
ENSHCOG00000019882	exosc1	98	77.604	ENSOCUG00000011898	-	98	77.604	Oryctolagus_cuniculus
ENSHCOG00000019882	exosc1	100	90.769	ENSORLG00000011595	exosc1	100	90.769	Oryzias_latipes
ENSHCOG00000019882	exosc1	100	90.769	ENSORLG00020005831	exosc1	100	90.769	Oryzias_latipes_hni
ENSHCOG00000019882	exosc1	100	90.256	ENSORLG00015004317	exosc1	100	90.256	Oryzias_latipes_hsok
ENSHCOG00000019882	exosc1	100	76.289	ENSOMEG00000013907	exosc1	99	76.289	Oryzias_melastigma
ENSHCOG00000019882	exosc1	98	78.534	ENSOGAG00000016259	EXOSC1	98	78.534	Otolemur_garnettii
ENSHCOG00000019882	exosc1	98	79.058	ENSOARG00000010136	EXOSC1	98	79.058	Ovis_aries
ENSHCOG00000019882	exosc1	98	73.057	ENSPPAG00000039842	EXOSC1	98	73.057	Pan_paniscus
ENSHCOG00000019882	exosc1	98	79.581	ENSPPRG00000023366	EXOSC1	98	79.581	Panthera_pardus
ENSHCOG00000019882	exosc1	98	79.581	ENSPTIG00000017701	EXOSC1	98	79.581	Panthera_tigris_altaica
ENSHCOG00000019882	exosc1	98	79.058	ENSPTRG00000002808	EXOSC1	98	79.058	Pan_troglodytes
ENSHCOG00000019882	exosc1	98	79.058	ENSPANG00000021324	EXOSC1	98	79.058	Papio_anubis
ENSHCOG00000019882	exosc1	100	89.691	ENSPKIG00000016037	exosc1	100	89.691	Paramormyrops_kingsleyae
ENSHCOG00000019882	exosc1	75	78.082	ENSPSIG00000013571	EXOSC1	98	77.686	Pelodiscus_sinensis
ENSHCOG00000019882	exosc1	100	81.443	ENSPMGG00000014002	exosc1	100	81.443	Periophthalmus_magnuspinnatus
ENSHCOG00000019882	exosc1	98	78.010	ENSPEMG00000010710	-	98	78.010	Peromyscus_maniculatus_bairdii
ENSHCOG00000019882	exosc1	95	68.280	ENSPMAG00000000195	exosc1	95	68.280	Petromyzon_marinus
ENSHCOG00000019882	exosc1	98	78.534	ENSPCIG00000002210	EXOSC1	97	78.534	Phascolarctos_cinereus
ENSHCOG00000019882	exosc1	100	86.598	ENSPFOG00000006755	exosc1	95	86.598	Poecilia_formosa
ENSHCOG00000019882	exosc1	100	86.598	ENSPLAG00000005880	exosc1	100	86.598	Poecilia_latipinna
ENSHCOG00000019882	exosc1	100	86.598	ENSPMEG00000015598	exosc1	95	86.598	Poecilia_mexicana
ENSHCOG00000019882	exosc1	100	74.742	ENSPREG00000000405	exosc1	94	74.742	Poecilia_reticulata
ENSHCOG00000019882	exosc1	98	79.058	ENSPPYG00000002531	EXOSC1	98	79.058	Pongo_abelii
ENSHCOG00000019882	exosc1	98	78.010	ENSPCAG00000009135	EXOSC1	98	78.010	Procavia_capensis
ENSHCOG00000019882	exosc1	98	72.775	ENSPCOG00000027539	EXOSC1	98	72.775	Propithecus_coquereli
ENSHCOG00000019882	exosc1	98	79.058	ENSPVAG00000003372	EXOSC1	98	79.058	Pteropus_vampyrus
ENSHCOG00000019882	exosc1	100	95.876	ENSPNYG00000021745	exosc1	100	95.876	Pundamilia_nyererei
ENSHCOG00000019882	exosc1	100	90.206	ENSPNAG00000001944	exosc1	100	90.206	Pygocentrus_nattereri
ENSHCOG00000019882	exosc1	98	78.010	ENSRNOG00000048708	Exosc1	98	78.010	Rattus_norvegicus
ENSHCOG00000019882	exosc1	98	79.058	ENSRBIG00000035618	EXOSC1	98	79.058	Rhinopithecus_bieti
ENSHCOG00000019882	exosc1	98	79.058	ENSRROG00000032589	EXOSC1	91	79.058	Rhinopithecus_roxellana
ENSHCOG00000019882	exosc1	64	38.125	YNL232W	CSL4	54	38.125	Saccharomyces_cerevisiae
ENSHCOG00000019882	exosc1	98	79.058	ENSSBOG00000000359	EXOSC1	98	79.058	Saimiri_boliviensis_boliviensis
ENSHCOG00000019882	exosc1	75	86.986	ENSSHAG00000018219	EXOSC1	99	86.986	Sarcophilus_harrisii
ENSHCOG00000019882	exosc1	100	89.691	ENSSFOG00015009069	exosc1	100	89.691	Scleropages_formosus
ENSHCOG00000019882	exosc1	100	87.629	ENSSFOG00015016289	-	100	87.629	Scleropages_formosus
ENSHCOG00000019882	exosc1	100	96.907	ENSSMAG00000003721	exosc1	100	96.907	Scophthalmus_maximus
ENSHCOG00000019882	exosc1	100	95.361	ENSSDUG00000002993	exosc1	100	95.361	Seriola_dumerili
ENSHCOG00000019882	exosc1	100	95.361	ENSSLDG00000025181	exosc1	100	95.361	Seriola_lalandi_dorsalis
ENSHCOG00000019882	exosc1	98	68.063	ENSSARG00000000162	EXOSC1	98	68.063	Sorex_araneus
ENSHCOG00000019882	exosc1	98	74.346	ENSSPUG00000012263	EXOSC1	98	74.346	Sphenodon_punctatus
ENSHCOG00000019882	exosc1	100	87.629	ENSSPAG00000016792	exosc1	83	87.629	Stegastes_partitus
ENSHCOG00000019882	exosc1	98	78.534	ENSSSCG00000010518	EXOSC1	89	78.534	Sus_scrofa
ENSHCOG00000019882	exosc1	98	75.916	ENSTGUG00000009692	EXOSC1	98	75.916	Taeniopygia_guttata
ENSHCOG00000019882	exosc1	98	81.579	ENSTRUG00000007706	exosc1	98	81.579	Takifugu_rubripes
ENSHCOG00000019882	exosc1	98	80.829	ENSTNIG00000014079	exosc1	97	80.829	Tetraodon_nigroviridis
ENSHCOG00000019882	exosc1	98	73.298	ENSTBEG00000006011	EXOSC1	98	73.298	Tupaia_belangeri
ENSHCOG00000019882	exosc1	94	80.874	ENSTTRG00000009887	EXOSC1	99	80.874	Tursiops_truncatus
ENSHCOG00000019882	exosc1	98	63.351	ENSUAMG00000010266	EXOSC1	98	63.351	Ursus_americanus
ENSHCOG00000019882	exosc1	98	63.351	ENSUMAG00000022002	EXOSC1	98	63.351	Ursus_maritimus
ENSHCOG00000019882	exosc1	98	79.058	ENSVVUG00000023192	EXOSC1	62	79.058	Vulpes_vulpes
ENSHCOG00000019882	exosc1	99	75.648	ENSXETG00000003434	exosc1	99	75.648	Xenopus_tropicalis
ENSHCOG00000019882	exosc1	62	87.603	ENSXCOG00000014499	exosc1	93	87.603	Xiphophorus_couchianus
ENSHCOG00000019882	exosc1	100	75.258	ENSXMAG00000023382	exosc1	94	75.258	Xiphophorus_maculatus