EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000020170 (Gene tree)
Gene ID: 109531711
Gene Symbol: rcl1
Alias: zgc:109921
Full Name: RNA terminal phosphate cyclase like 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 8171 bases
Position: chrKV879659.1:153108-161278
Accession: 109531711
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000027927	RTC	PF01137.21	2.2e-58	1	1
ENSHCOP00000027927	RTC_insert	PF05189.13	1.8e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000024576	-	1827	XM_019856161	ENSHCOP00000027927	372 (aa)	XP_019711720	UPI00094F349F

Gene Model

Click here to download ENSHCOG00000020170's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000020170's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000020170	rcl1	99	78.378	ENSG00000120158	RCL1	100	81.019	Homo_sapiens
ENSHCOG00000020170	rcl1	100	89.785	ENSAPOG00000015666	rcl1	100	89.785	Acanthochromis_polyacanthus
ENSHCOG00000020170	rcl1	99	79.189	ENSAMEG00000002631	RCL1	99	79.189	Ailuropoda_melanoleuca
ENSHCOG00000020170	rcl1	100	88.978	ENSACIG00000021195	rcl1	100	88.978	Amphilophus_citrinellus
ENSHCOG00000020170	rcl1	100	88.978	ENSAOCG00000002223	rcl1	100	88.978	Amphiprion_ocellaris
ENSHCOG00000020170	rcl1	100	89.516	ENSAPEG00000006905	rcl1	100	89.516	Amphiprion_percula
ENSHCOG00000020170	rcl1	100	88.978	ENSATEG00000020026	rcl1	100	88.978	Anabas_testudineus
ENSHCOG00000020170	rcl1	88	74.772	ENSAPLG00000006031	RCL1	100	74.772	Anas_platyrhynchos
ENSHCOG00000020170	rcl1	99	74.054	ENSACAG00000003640	RCL1	99	74.054	Anolis_carolinensis
ENSHCOG00000020170	rcl1	99	77.838	ENSANAG00000037372	RCL1	99	77.838	Aotus_nancymaae
ENSHCOG00000020170	rcl1	100	89.516	ENSACLG00000021724	rcl1	100	89.516	Astatotilapia_calliptera
ENSHCOG00000020170	rcl1	99	80.978	ENSAMXG00000033394	rcl1	99	80.978	Astyanax_mexicanus
ENSHCOG00000020170	rcl1	99	46.561	WBGene00022852	ZK1127.5	99	46.561	Caenorhabditis_elegans
ENSHCOG00000020170	rcl1	99	78.108	ENSCJAG00000011202	RCL1	99	78.108	Callithrix_jacchus
ENSHCOG00000020170	rcl1	99	79.189	ENSCAFG00000002091	RCL1	99	79.189	Canis_familiaris
ENSHCOG00000020170	rcl1	99	79.189	ENSCAFG00020000638	RCL1	77	79.189	Canis_lupus_dingo
ENSHCOG00000020170	rcl1	99	77.568	ENSCHIG00000012407	RCL1	99	77.568	Capra_hircus
ENSHCOG00000020170	rcl1	88	78.963	ENSTSYG00000009592	RCL1	97	81.319	Carlito_syrichta
ENSHCOG00000020170	rcl1	66	66.667	ENSCAPG00000013575	RCL1	100	66.667	Cavia_aperea
ENSHCOG00000020170	rcl1	99	77.568	ENSCPOG00000015354	RCL1	99	77.568	Cavia_porcellus
ENSHCOG00000020170	rcl1	99	78.108	ENSCCAG00000033505	RCL1	97	80.328	Cebus_capucinus
ENSHCOG00000020170	rcl1	99	78.108	ENSCATG00000034721	RCL1	97	80.769	Cercocebus_atys
ENSHCOG00000020170	rcl1	99	78.378	ENSCLAG00000007445	RCL1	99	78.378	Chinchilla_lanigera
ENSHCOG00000020170	rcl1	99	78.108	ENSCSAG00000008811	RCL1	99	78.108	Chlorocebus_sabaeus
ENSHCOG00000020170	rcl1	86	67.712	ENSCHOG00000007216	RCL1	99	67.712	Choloepus_hoffmanni
ENSHCOG00000020170	rcl1	100	75.668	ENSCPBG00000025481	RCL1	94	75.758	Chrysemys_picta_bellii
ENSHCOG00000020170	rcl1	100	58.933	ENSCING00000019565	-	99	58.933	Ciona_intestinalis
ENSHCOG00000020170	rcl1	99	78.108	ENSCANG00000027099	RCL1	99	78.108	Colobus_angolensis_palliatus
ENSHCOG00000020170	rcl1	99	78.649	ENSCGRG00001013748	Rcl1	99	78.649	Cricetulus_griseus_chok1gshd
ENSHCOG00000020170	rcl1	88	79.027	ENSCGRG00000005843	Rcl1	99	79.027	Cricetulus_griseus_crigri
ENSHCOG00000020170	rcl1	100	88.172	ENSCSEG00000000712	rcl1	98	88.172	Cynoglossus_semilaevis
ENSHCOG00000020170	rcl1	100	91.129	ENSCVAG00000011536	rcl1	100	91.129	Cyprinodon_variegatus
ENSHCOG00000020170	rcl1	99	79.564	ENSDARG00000038312	rcl1	100	79.564	Danio_rerio
ENSHCOG00000020170	rcl1	72	78.195	ENSDNOG00000019911	RCL1	100	81.019	Dasypus_novemcinctus
ENSHCOG00000020170	rcl1	99	78.378	ENSDORG00000015645	Rcl1	99	78.378	Dipodomys_ordii
ENSHCOG00000020170	rcl1	98	53.639	FBgn0020909	Rtc1	97	54.301	Drosophila_melanogaster
ENSHCOG00000020170	rcl1	88	53.049	ENSETEG00000014087	-	82	95.652	Echinops_telfairi
ENSHCOG00000020170	rcl1	100	54.155	ENSEBUG00000016621	-	99	54.155	Eptatretus_burgeri
ENSHCOG00000020170	rcl1	99	78.108	ENSEASG00005010653	RCL1	99	78.108	Equus_asinus_asinus
ENSHCOG00000020170	rcl1	99	78.108	ENSECAG00000015973	RCL1	99	78.108	Equus_caballus
ENSHCOG00000020170	rcl1	99	65.676	ENSEEUG00000009801	RCL1	99	65.676	Erinaceus_europaeus
ENSHCOG00000020170	rcl1	100	80.376	ENSELUG00000007353	rcl1	100	80.376	Esox_lucius
ENSHCOG00000020170	rcl1	99	78.378	ENSFCAG00000014557	RCL1	99	78.378	Felis_catus
ENSHCOG00000020170	rcl1	99	69.003	ENSFALG00000010553	RCL1	97	69.003	Ficedula_albicollis
ENSHCOG00000020170	rcl1	88	76.524	ENSFDAG00000004209	RCL1	100	76.524	Fukomys_damarensis
ENSHCOG00000020170	rcl1	100	91.667	ENSFHEG00000011228	rcl1	100	91.667	Fundulus_heteroclitus
ENSHCOG00000020170	rcl1	100	80.645	ENSGMOG00000004677	rcl1	100	80.645	Gadus_morhua
ENSHCOG00000020170	rcl1	99	73.514	ENSGALG00000015024	RCL1	99	73.514	Gallus_gallus
ENSHCOG00000020170	rcl1	100	90.591	ENSGAFG00000007257	rcl1	100	90.591	Gambusia_affinis
ENSHCOG00000020170	rcl1	100	89.247	ENSGACG00000017474	rcl1	100	89.247	Gasterosteus_aculeatus
ENSHCOG00000020170	rcl1	100	75.668	ENSGAGG00000003689	RCL1	100	75.668	Gopherus_agassizii
ENSHCOG00000020170	rcl1	99	77.838	ENSGGOG00000015041	RCL1	97	80.220	Gorilla_gorilla
ENSHCOG00000020170	rcl1	100	89.785	ENSHBUG00000001393	rcl1	100	89.785	Haplochromis_burtoni
ENSHCOG00000020170	rcl1	99	65.583	ENSHGLG00000005368	-	99	65.583	Heterocephalus_glaber_female
ENSHCOG00000020170	rcl1	99	77.838	ENSHGLG00000016452	RCL1	99	77.838	Heterocephalus_glaber_female
ENSHCOG00000020170	rcl1	99	66.396	ENSHGLG00100018010	-	99	66.396	Heterocephalus_glaber_male
ENSHCOG00000020170	rcl1	99	72.162	ENSHGLG00100008718	-	99	72.162	Heterocephalus_glaber_male
ENSHCOG00000020170	rcl1	100	82.258	ENSIPUG00000018054	RCL1	100	82.258	Ictalurus_punctatus
ENSHCOG00000020170	rcl1	99	77.838	ENSSTOG00000000023	RCL1	99	77.838	Ictidomys_tridecemlineatus
ENSHCOG00000020170	rcl1	99	78.649	ENSJJAG00000022803	-	99	78.649	Jaculus_jaculus
ENSHCOG00000020170	rcl1	54	61.881	ENSJJAG00000000764	-	98	61.881	Jaculus_jaculus
ENSHCOG00000020170	rcl1	99	69.189	ENSJJAG00000015632	-	99	69.189	Jaculus_jaculus
ENSHCOG00000020170	rcl1	100	89.516	ENSKMAG00000011946	rcl1	100	89.516	Kryptolebias_marmoratus
ENSHCOG00000020170	rcl1	100	84.946	ENSLBEG00000003957	rcl1	100	84.946	Labrus_bergylta
ENSHCOG00000020170	rcl1	93	73.988	ENSLACG00000004594	RCL1	100	78.261	Latimeria_chalumnae
ENSHCOG00000020170	rcl1	100	80.914	ENSLOCG00000010148	rcl1	98	80.914	Lepisosteus_oculatus
ENSHCOG00000020170	rcl1	99	77.297	ENSLAFG00000017495	RCL1	99	77.297	Loxodonta_africana
ENSHCOG00000020170	rcl1	99	78.108	ENSMFAG00000037906	RCL1	99	78.108	Macaca_fascicularis
ENSHCOG00000020170	rcl1	99	78.108	ENSMNEG00000012288	RCL1	97	80.769	Macaca_nemestrina
ENSHCOG00000020170	rcl1	99	78.108	ENSMLEG00000043088	RCL1	99	78.108	Mandrillus_leucophaeus
ENSHCOG00000020170	rcl1	100	90.323	ENSMAMG00000008311	rcl1	100	90.323	Mastacembelus_armatus
ENSHCOG00000020170	rcl1	100	89.516	ENSMZEG00005017292	rcl1	100	89.516	Maylandia_zebra
ENSHCOG00000020170	rcl1	58	72.727	ENSMGAG00000002245	RCL1	100	72.727	Meleagris_gallopavo
ENSHCOG00000020170	rcl1	58	80.556	ENSMAUG00000008922	Rcl1	100	80.556	Mesocricetus_auratus
ENSHCOG00000020170	rcl1	99	78.320	ENSMICG00000015562	RCL1	99	78.320	Microcebus_murinus
ENSHCOG00000020170	rcl1	99	78.378	ENSMOCG00000012145	Rcl1	99	78.378	Microtus_ochrogaster
ENSHCOG00000020170	rcl1	100	86.863	ENSMMOG00000021264	rcl1	100	86.863	Mola_mola
ENSHCOG00000020170	rcl1	95	77.841	ENSMODG00000015377	RCL1	93	77.841	Monodelphis_domestica
ENSHCOG00000020170	rcl1	100	89.785	ENSMALG00000018618	rcl1	100	89.785	Monopterus_albus
ENSHCOG00000020170	rcl1	99	78.378	MGP_CAROLIEiJ_G0022853	Rcl1	99	78.378	Mus_caroli
ENSHCOG00000020170	rcl1	99	77.838	ENSMUSG00000024785	Rcl1	99	77.838	Mus_musculus
ENSHCOG00000020170	rcl1	99	78.649	MGP_PahariEiJ_G0014346	Rcl1	100	79.532	Mus_pahari
ENSHCOG00000020170	rcl1	99	77.838	MGP_SPRETEiJ_G0023771	Rcl1	100	78.947	Mus_spretus
ENSHCOG00000020170	rcl1	99	78.919	ENSMPUG00000004998	RCL1	99	78.919	Mustela_putorius_furo
ENSHCOG00000020170	rcl1	99	76.757	ENSMLUG00000009654	RCL1	99	76.757	Myotis_lucifugus
ENSHCOG00000020170	rcl1	99	78.378	ENSNGAG00000015327	Rcl1	99	78.378	Nannospalax_galili
ENSHCOG00000020170	rcl1	91	87.834	ENSNBRG00000019854	rcl1	99	83.196	Neolamprologus_brichardi
ENSHCOG00000020170	rcl1	99	75.676	ENSNLEG00000008891	RCL1	99	75.676	Nomascus_leucogenys
ENSHCOG00000020170	rcl1	99	71.622	ENSMEUG00000007653	RCL1	99	71.622	Notamacropus_eugenii
ENSHCOG00000020170	rcl1	99	76.757	ENSOPRG00000010965	RCL1	99	76.757	Ochotona_princeps
ENSHCOG00000020170	rcl1	88	66.261	ENSODEG00000004151	RCL1	96	66.261	Octodon_degus
ENSHCOG00000020170	rcl1	100	90.591	ENSONIG00000003871	rcl1	100	90.591	Oreochromis_niloticus
ENSHCOG00000020170	rcl1	66	75.904	ENSOANG00000013193	-	98	75.904	Ornithorhynchus_anatinus
ENSHCOG00000020170	rcl1	99	78.108	ENSOCUG00000008161	RCL1	99	78.108	Oryctolagus_cuniculus
ENSHCOG00000020170	rcl1	100	86.022	ENSORLG00000010443	rcl1	100	86.022	Oryzias_latipes
ENSHCOG00000020170	rcl1	100	86.290	ENSORLG00020012211	rcl1	100	86.290	Oryzias_latipes_hni
ENSHCOG00000020170	rcl1	100	85.753	ENSORLG00015001122	rcl1	100	85.753	Oryzias_latipes_hsok
ENSHCOG00000020170	rcl1	100	88.441	ENSOMEG00000022976	rcl1	88	88.441	Oryzias_melastigma
ENSHCOG00000020170	rcl1	99	77.568	ENSOGAG00000007480	RCL1	99	77.568	Otolemur_garnettii
ENSHCOG00000020170	rcl1	99	77.568	ENSOARG00000013463	RCL1	99	77.568	Ovis_aries
ENSHCOG00000020170	rcl1	99	78.108	ENSPPAG00000037958	RCL1	99	78.108	Pan_paniscus
ENSHCOG00000020170	rcl1	99	77.838	ENSPPRG00000022645	RCL1	99	77.838	Panthera_pardus
ENSHCOG00000020170	rcl1	88	78.287	ENSPTIG00000019031	RCL1	100	80.093	Panthera_tigris_altaica
ENSHCOG00000020170	rcl1	99	77.838	ENSPTRG00000020743	RCL1	97	80.769	Pan_troglodytes
ENSHCOG00000020170	rcl1	99	78.108	ENSPANG00000025151	RCL1	99	78.108	Papio_anubis
ENSHCOG00000020170	rcl1	100	79.839	ENSPKIG00000021022	rcl1	100	79.839	Paramormyrops_kingsleyae
ENSHCOG00000020170	rcl1	88	76.292	ENSPSIG00000012302	RCL1	100	76.292	Pelodiscus_sinensis
ENSHCOG00000020170	rcl1	100	87.903	ENSPMGG00000024007	rcl1	100	87.903	Periophthalmus_magnuspinnatus
ENSHCOG00000020170	rcl1	99	78.649	ENSPEMG00000023275	Rcl1	99	78.649	Peromyscus_maniculatus_bairdii
ENSHCOG00000020170	rcl1	97	30.495	ENSPMAG00000009110	rtca	96	30.495	Petromyzon_marinus
ENSHCOG00000020170	rcl1	99	77.838	ENSPCIG00000000188	RCL1	99	77.838	Phascolarctos_cinereus
ENSHCOG00000020170	rcl1	100	90.323	ENSPFOG00000019682	rcl1	99	90.323	Poecilia_formosa
ENSHCOG00000020170	rcl1	100	90.323	ENSPLAG00000022354	rcl1	100	90.323	Poecilia_latipinna
ENSHCOG00000020170	rcl1	100	90.323	ENSPMEG00000008131	rcl1	100	90.323	Poecilia_mexicana
ENSHCOG00000020170	rcl1	100	89.785	ENSPREG00000008032	rcl1	100	89.785	Poecilia_reticulata
ENSHCOG00000020170	rcl1	99	78.108	ENSPPYG00000019244	RCL1	99	78.108	Pongo_abelii
ENSHCOG00000020170	rcl1	99	71.622	ENSPCAG00000001440	RCL1	99	71.622	Procavia_capensis
ENSHCOG00000020170	rcl1	99	78.378	ENSPCOG00000009611	RCL1	97	80.769	Propithecus_coquereli
ENSHCOG00000020170	rcl1	99	77.568	ENSPVAG00000015752	RCL1	99	77.568	Pteropus_vampyrus
ENSHCOG00000020170	rcl1	100	89.785	ENSPNYG00000012910	rcl1	100	89.785	Pundamilia_nyererei
ENSHCOG00000020170	rcl1	99	81.522	ENSPNAG00000028307	rcl1	91	81.522	Pygocentrus_nattereri
ENSHCOG00000020170	rcl1	99	78.108	ENSRNOG00000015491	Rcl1	99	78.108	Rattus_norvegicus
ENSHCOG00000020170	rcl1	99	77.838	ENSRBIG00000035818	RCL1	99	77.838	Rhinopithecus_bieti
ENSHCOG00000020170	rcl1	99	78.108	ENSRROG00000029781	RCL1	97	80.769	Rhinopithecus_roxellana
ENSHCOG00000020170	rcl1	98	38.147	YOL010W	-	97	38.147	Saccharomyces_cerevisiae
ENSHCOG00000020170	rcl1	99	78.378	ENSSBOG00000026369	RCL1	97	80.874	Saimiri_boliviensis_boliviensis
ENSHCOG00000020170	rcl1	89	77.644	ENSSHAG00000014086	RCL1	100	77.644	Sarcophilus_harrisii
ENSHCOG00000020170	rcl1	100	80.108	ENSSFOG00015023020	rcl1	100	80.108	Scleropages_formosus
ENSHCOG00000020170	rcl1	100	91.398	ENSSMAG00000019751	rcl1	86	91.398	Scophthalmus_maximus
ENSHCOG00000020170	rcl1	100	91.398	ENSSDUG00000006349	rcl1	100	91.398	Seriola_dumerili
ENSHCOG00000020170	rcl1	100	90.591	ENSSLDG00000022076	rcl1	100	90.591	Seriola_lalandi_dorsalis
ENSHCOG00000020170	rcl1	99	77.838	ENSSARG00000009260	RCL1	99	77.838	Sorex_araneus
ENSHCOG00000020170	rcl1	99	76.216	ENSSPUG00000016330	RCL1	99	76.216	Sphenodon_punctatus
ENSHCOG00000020170	rcl1	100	90.860	ENSSPAG00000018038	rcl1	100	90.860	Stegastes_partitus
ENSHCOG00000020170	rcl1	99	78.108	ENSSSCG00000005217	RCL1	82	78.108	Sus_scrofa
ENSHCOG00000020170	rcl1	99	73.387	ENSTGUG00000005138	RCL1	99	73.387	Taeniopygia_guttata
ENSHCOG00000020170	rcl1	100	88.172	ENSTRUG00000010493	rcl1	100	88.172	Takifugu_rubripes
ENSHCOG00000020170	rcl1	100	84.409	ENSTNIG00000013214	rcl1	99	84.409	Tetraodon_nigroviridis
ENSHCOG00000020170	rcl1	99	73.514	ENSTBEG00000016339	RCL1	99	73.514	Tupaia_belangeri
ENSHCOG00000020170	rcl1	99	77.568	ENSTTRG00000016525	RCL1	99	77.568	Tursiops_truncatus
ENSHCOG00000020170	rcl1	99	79.189	ENSUAMG00000005598	RCL1	99	80.000	Ursus_americanus
ENSHCOG00000020170	rcl1	88	78.963	ENSUMAG00000017890	RCL1	97	78.963	Ursus_maritimus
ENSHCOG00000020170	rcl1	88	78.354	ENSVPAG00000009188	RCL1	100	78.354	Vicugna_pacos
ENSHCOG00000020170	rcl1	88	79.939	ENSVVUG00000007304	RCL1	89	79.939	Vulpes_vulpes
ENSHCOG00000020170	rcl1	100	71.467	ENSXETG00000000592	rcl1	100	71.467	Xenopus_tropicalis
ENSHCOG00000020170	rcl1	100	90.591	ENSXCOG00000004922	rcl1	100	90.591	Xiphophorus_couchianus
ENSHCOG00000020170	rcl1	100	90.591	ENSXMAG00000022366	RCL1	100	90.591	Xiphophorus_maculatus