EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000020238 (Gene tree)
Gene ID: 109524003
Gene Symbol: -
Alias: -
Full Name: ras-related protein Rab-5C-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 3916 bases
Position: chrKV880215.1:895838-899753
Accession: 109524003
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000016482	MMR_HSR1	PF01926.23	3.3e-05	1	1
ENSHCOP00000027960	MMR_HSR1	PF01926.23	3.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000028486	-	657	-	ENSHCOP00000016482	219 (aa)	-	-
ENSHCOT00000028483	-	2092	XM_019883569	ENSHCOP00000027960	228 (aa)	XP_019739128	UPI00094F3174

Gene Model

Click here to download ENSHCOG00000020238's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq04144	Endocytosis	KEGG
hcq04145	Phagosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000020238's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000020238	-	54	31.967	ENSHCOG00000000920	arl8ba	62	31.967
ENSHCOG00000020238	-	89	35.749	ENSHCOG00000004225	-	98	36.275
ENSHCOG00000020238	-	69	32.298	ENSHCOG00000020527	rab34a	61	32.298
ENSHCOG00000020238	-	75	32.530	ENSHCOG00000011080	kras	87	32.530
ENSHCOG00000020238	-	55	33.065	ENSHCOG00000010468	arl8bb	63	33.065
ENSHCOG00000020238	-	89	35.407	ENSHCOG00000006538	si:dkey-16l2.16	97	35.784
ENSHCOG00000020238	-	76	45.783	ENSHCOG00000000985	-	78	47.500
ENSHCOG00000020238	-	77	36.782	ENSHCOG00000012376	rab12	72	36.782
ENSHCOG00000020238	-	89	40.909	ENSHCOG00000019468	rab1ba	98	41.414
ENSHCOG00000020238	-	91	32.850	ENSHCOG00000005024	rab9b	98	33.816
ENSHCOG00000020238	-	86	39.286	ENSHCOG00000014711	rab6ba	94	39.286
ENSHCOG00000020238	-	75	40.588	ENSHCOG00000016322	RAB7A	80	41.317
ENSHCOG00000020238	-	79	43.103	ENSHCOG00000019224	rab14	79	43.195
ENSHCOG00000020238	-	88	49.223	ENSHCOG00000001145	rab22a	98	50.510
ENSHCOG00000020238	-	87	40.777	ENSHCOG00000000232	rab11al	95	40.777
ENSHCOG00000020238	-	90	44.335	ENSHCOG00000013095	rab25a	95	45.545
ENSHCOG00000020238	-	87	41.414	ENSHCOG00000010023	-	98	41.414
ENSHCOG00000020238	-	76	39.766	ENSHCOG00000009133	zgc:101559	72	39.766
ENSHCOG00000020238	-	75	30.909	ENSHCOG00000003667	rhebl1	89	30.909
ENSHCOG00000020238	-	74	34.783	ENSHCOG00000009757	ran	73	34.783
ENSHCOG00000020238	-	76	45.783	ENSHCOG00000006550	-	80	45.783
ENSHCOG00000020238	-	76	37.647	ENSHCOG00000015692	si:dkey-34d22.5	78	37.647
ENSHCOG00000020238	-	88	41.379	ENSHCOG00000000954	-	96	41.379
ENSHCOG00000020238	-	88	40.513	ENSHCOG00000007187	rab25b	84	40.513
ENSHCOG00000020238	-	66	37.931	ENSHCOG00000010707	rab30	77	38.732
ENSHCOG00000020238	-	86	35.122	ENSHCOG00000003981	RAB39B	96	35.122
ENSHCOG00000020238	-	74	42.945	ENSHCOG00000014428	rab2a	77	42.945
ENSHCOG00000020238	-	99	81.735	ENSHCOG00000004662	rab5c	94	82.857
ENSHCOG00000020238	-	82	32.778	ENSHCOG00000013807	rheb	96	32.778
ENSHCOG00000020238	-	91	34.300	ENSHCOG00000004086	rab9a	99	34.466
ENSHCOG00000020238	-	90	41.627	ENSHCOG00000002423	rab11bb	96	41.627
ENSHCOG00000020238	-	79	42.775	ENSHCOG00000013180	-	79	42.604
ENSHCOG00000020238	-	74	44.172	ENSHCOG00000013130	rab6bb	78	44.172
ENSHCOG00000020238	-	54	31.148	ENSHCOG00000005512	-	61	31.148
ENSHCOG00000020238	-	84	42.623	ENSHCOG00000004404	rab41	80	44.379
ENSHCOG00000020238	-	88	34.259	ENSHCOG00000012834	-	90	33.803
ENSHCOG00000020238	-	76	46.386	ENSHCOG00000005652	rab11a	77	46.386
ENSHCOG00000020238	-	84	35.263	ENSHCOG00000004726	rab33a	72	38.462
ENSHCOG00000020238	-	91	37.500	ENSHCOG00000007440	rab13	96	37.755
ENSHCOG00000020238	-	76	36.747	ENSHCOG00000017086	RAB15	74	37.736
ENSHCOG00000020238	-	93	34.272	ENSHCOG00000017123	-	94	34.653
ENSHCOG00000020238	-	95	35.349	ENSHCOG00000005802	RAB9A	80	39.306
ENSHCOG00000020238	-	74	36.970	ENSHCOG00000019732	-	77	36.970
ENSHCOG00000020238	-	76	46.386	ENSHCOG00000001137	rab1ab	98	43.284
ENSHCOG00000020238	-	64	33.571	ENSHCOG00000013919	rab23	74	34.868
ENSHCOG00000020238	-	86	35.681	ENSHCOG00000003569	rab33ba	88	35.681
ENSHCOG00000020238	-	74	45.679	ENSHCOG00000002217	rab18b	79	45.679

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000020238	-	100	80.455	ENSG00000108774	RAB5C	95	90.756	Homo_sapiens
ENSHCOG00000020238	-	100	79.825	ENSAPOG00000016864	rab5c	95	81.905	Acanthochromis_polyacanthus
ENSHCOG00000020238	-	100	80.000	ENSAMEG00000006003	RAB5C	97	81.604	Ailuropoda_melanoleuca
ENSHCOG00000020238	-	99	79.909	ENSACIG00000010896	rab5c	97	81.905	Amphilophus_citrinellus
ENSHCOG00000020238	-	100	79.825	ENSAOCG00000016614	rab5c	95	81.905	Amphiprion_ocellaris
ENSHCOG00000020238	-	97	79.730	ENSAPEG00000017868	-	96	81.905	Amphiprion_percula
ENSHCOG00000020238	-	100	80.090	ENSATEG00000001937	rab5c	97	80.660	Anabas_testudineus
ENSHCOG00000020238	-	95	83.173	ENSANAG00000025390	RAB5C	97	83.500	Aotus_nancymaae
ENSHCOG00000020238	-	99	78.539	ENSACLG00000002706	rab5c	95	80.000	Astatotilapia_calliptera
ENSHCOG00000020238	-	99	84.545	ENSACLG00000008615	-	99	85.455	Astatotilapia_calliptera
ENSHCOG00000020238	-	100	80.702	ENSAMXG00000043717	rab5c	95	82.857	Astyanax_mexicanus
ENSHCOG00000020238	-	95	81.991	ENSAMXG00000037267	-	99	82.464	Astyanax_mexicanus
ENSHCOG00000020238	-	100	80.000	ENSBTAG00000006982	RAB5C	97	81.604	Bos_taurus
ENSHCOG00000020238	-	99	71.889	WBGene00004268	rab-5	96	72.596	Caenorhabditis_elegans
ENSHCOG00000020238	-	100	80.000	ENSCAFG00000015629	RAB5C	97	81.604	Canis_familiaris
ENSHCOG00000020238	-	100	80.000	ENSCAFG00020013537	RAB5C	97	81.604	Canis_lupus_dingo
ENSHCOG00000020238	-	100	80.000	ENSCHIG00000012960	RAB5C	97	81.604	Capra_hircus
ENSHCOG00000020238	-	100	80.455	ENSTSYG00000030531	RAB5C	97	82.075	Carlito_syrichta
ENSHCOG00000020238	-	100	80.000	ENSCCAG00000025940	RAB5C	97	81.604	Cebus_capucinus
ENSHCOG00000020238	-	100	80.455	ENSCATG00000040873	RAB5C	97	82.075	Cercocebus_atys
ENSHCOG00000020238	-	100	79.545	ENSCLAG00000016650	RAB5C	96	81.517	Chinchilla_lanigera
ENSHCOG00000020238	-	83	87.845	ENSCHOG00000009886	RAB5C	97	89.017	Choloepus_hoffmanni
ENSHCOG00000020238	-	96	75.117	ENSCING00000003340	-	95	75.355	Ciona_intestinalis
ENSHCOG00000020238	-	90	76.214	ENSCSAVG00000000613	-	89	86.207	Ciona_savignyi
ENSHCOG00000020238	-	100	80.455	ENSCGRG00001014226	Rab5c	97	82.075	Cricetulus_griseus_chok1gshd
ENSHCOG00000020238	-	100	80.455	ENSCGRG00000007534	Rab5c	97	82.075	Cricetulus_griseus_crigri
ENSHCOG00000020238	-	100	79.386	ENSCSEG00000017024	rab5c	95	81.429	Cynoglossus_semilaevis
ENSHCOG00000020238	-	99	81.735	ENSCVAG00000009550	rab5c	95	82.857	Cyprinodon_variegatus
ENSHCOG00000020238	-	100	80.000	ENSDNOG00000038853	RAB5C	97	81.604	Dasypus_novemcinctus
ENSHCOG00000020238	-	100	80.000	ENSDORG00000006819	Rab5c	96	81.991	Dipodomys_ordii
ENSHCOG00000020238	-	97	71.495	FBgn0014010	Rab5	93	71.905	Drosophila_melanogaster
ENSHCOG00000020238	-	96	75.829	ENSEBUG00000014794	rab5c	96	75.962	Eptatretus_burgeri
ENSHCOG00000020238	-	100	80.000	ENSEASG00005009281	RAB5C	97	81.604	Equus_asinus_asinus
ENSHCOG00000020238	-	100	80.455	ENSECAG00000025054	RAB5C	97	82.075	Equus_caballus
ENSHCOG00000020238	-	100	80.000	ENSEEUG00000002790	RAB5C	97	81.604	Erinaceus_europaeus
ENSHCOG00000020238	-	99	78.539	ENSELUG00000010439	-	95	80.000	Esox_lucius
ENSHCOG00000020238	-	99	80.909	ENSELUG00000018516	rab5c	97	81.517	Esox_lucius
ENSHCOG00000020238	-	100	80.000	ENSFCAG00000002148	RAB5C	97	81.604	Felis_catus
ENSHCOG00000020238	-	100	79.091	ENSFDAG00000021541	RAB5C	97	80.660	Fukomys_damarensis
ENSHCOG00000020238	-	100	79.825	ENSFHEG00000012117	rab5c	95	81.905	Fundulus_heteroclitus
ENSHCOG00000020238	-	99	84.932	ENSFHEG00000015268	-	95	85.782	Fundulus_heteroclitus
ENSHCOG00000020238	-	100	77.632	ENSGMOG00000015096	rab5c	95	79.524	Gadus_morhua
ENSHCOG00000020238	-	77	86.310	ENSGMOG00000001876	-	94	88.272	Gadus_morhua
ENSHCOG00000020238	-	95	86.058	ENSGAFG00000003642	-	96	82.710	Gambusia_affinis
ENSHCOG00000020238	-	100	80.263	ENSGAFG00000000884	rab5c	95	82.381	Gambusia_affinis
ENSHCOG00000020238	-	99	80.822	ENSGACG00000008659	rab5c	91	84.000	Gasterosteus_aculeatus
ENSHCOG00000020238	-	100	80.455	ENSGGOG00000005472	RAB5C	97	82.075	Gorilla_gorilla
ENSHCOG00000020238	-	99	78.539	ENSHBUG00000002014	rab5c	95	80.000	Haplochromis_burtoni
ENSHCOG00000020238	-	99	84.545	ENSHBUG00000006823	-	99	85.455	Haplochromis_burtoni
ENSHCOG00000020238	-	100	79.091	ENSHGLG00000012067	RAB5C	97	80.189	Heterocephalus_glaber_female
ENSHCOG00000020238	-	96	77.727	ENSIPUG00000020082	rab5c	95	81.043	Ictalurus_punctatus
ENSHCOG00000020238	-	100	80.909	ENSSTOG00000006620	RAB5C	97	82.547	Ictidomys_tridecemlineatus
ENSHCOG00000020238	-	100	80.455	ENSJJAG00000021181	Rab5c	97	82.075	Jaculus_jaculus
ENSHCOG00000020238	-	100	78.947	ENSKMAG00000020038	rab5c	95	80.952	Kryptolebias_marmoratus
ENSHCOG00000020238	-	99	84.018	ENSKMAG00000017417	-	95	85.167	Kryptolebias_marmoratus
ENSHCOG00000020238	-	100	81.140	ENSLBEG00000004128	rab5c	95	83.333	Labrus_bergylta
ENSHCOG00000020238	-	99	84.862	ENSLBEG00000010408	-	96	83.962	Labrus_bergylta
ENSHCOG00000020238	-	99	81.193	ENSLOCG00000012566	rab5c	97	81.905	Lepisosteus_oculatus
ENSHCOG00000020238	-	100	80.455	ENSMFAG00000039627	RAB5C	97	82.075	Macaca_fascicularis
ENSHCOG00000020238	-	100	80.455	ENSMNEG00000000355	RAB5C	97	82.075	Macaca_nemestrina
ENSHCOG00000020238	-	99	84.932	ENSMAMG00000016207	-	95	85.238	Mastacembelus_armatus
ENSHCOG00000020238	-	100	78.947	ENSMAMG00000022322	rab5c	95	81.905	Mastacembelus_armatus
ENSHCOG00000020238	-	99	84.545	ENSMZEG00005021090	-	99	85.455	Maylandia_zebra
ENSHCOG00000020238	-	99	78.539	ENSMZEG00005022735	rab5c	95	80.000	Maylandia_zebra
ENSHCOG00000020238	-	100	80.455	ENSMAUG00000015005	Rab5c	97	82.075	Mesocricetus_auratus
ENSHCOG00000020238	-	100	80.455	ENSMICG00000041608	RAB5C	97	82.075	Microcebus_murinus
ENSHCOG00000020238	-	100	80.455	ENSMOCG00000018531	-	97	82.075	Microtus_ochrogaster
ENSHCOG00000020238	-	99	80.365	ENSMMOG00000020621	rab5c	95	81.429	Mola_mola
ENSHCOG00000020238	-	99	85.388	ENSMALG00000022348	-	95	87.143	Monopterus_albus
ENSHCOG00000020238	-	97	76.471	ENSMALG00000006052	rab5c	95	78.095	Monopterus_albus
ENSHCOG00000020238	-	100	80.909	MGP_CAROLIEiJ_G0017184	Rab5c	97	82.547	Mus_caroli
ENSHCOG00000020238	-	100	80.909	ENSMUSG00000019173	Rab5c	97	82.547	Mus_musculus
ENSHCOG00000020238	-	100	80.909	MGP_PahariEiJ_G0018314	Rab5c	97	82.547	Mus_pahari
ENSHCOG00000020238	-	100	80.909	MGP_SPRETEiJ_G0018027	Rab5c	97	82.547	Mus_spretus
ENSHCOG00000020238	-	100	80.000	ENSMPUG00000010554	RAB5C	97	81.604	Mustela_putorius_furo
ENSHCOG00000020238	-	100	79.545	ENSNGAG00000010286	Rab5c	96	81.517	Nannospalax_galili
ENSHCOG00000020238	-	99	79.452	ENSNBRG00000018165	rab5c	95	80.952	Neolamprologus_brichardi
ENSHCOG00000020238	-	99	84.545	ENSNBRG00000016922	-	99	85.455	Neolamprologus_brichardi
ENSHCOG00000020238	-	83	83.425	ENSOPRG00000008255	RAB5C	97	83.815	Ochotona_princeps
ENSHCOG00000020238	-	100	79.091	ENSODEG00000017920	RAB5C	96	81.043	Octodon_degus
ENSHCOG00000020238	-	100	79.386	ENSONIG00000001113	rab5c	95	81.429	Oreochromis_niloticus
ENSHCOG00000020238	-	100	78.733	ENSORLG00000003882	rab5c	97	79.245	Oryzias_latipes
ENSHCOG00000020238	-	100	78.733	ENSORLG00020008388	rab5c	97	79.245	Oryzias_latipes_hni
ENSHCOG00000020238	-	100	78.733	ENSORLG00015021900	rab5c	97	79.245	Oryzias_latipes_hsok
ENSHCOG00000020238	-	100	78.733	ENSOMEG00000023078	rab5c	97	79.245	Oryzias_melastigma
ENSHCOG00000020238	-	100	80.000	ENSOGAG00000009456	RAB5C	96	81.991	Otolemur_garnettii
ENSHCOG00000020238	-	100	80.000	ENSOARG00000018768	RAB5C	97	81.604	Ovis_aries
ENSHCOG00000020238	-	100	80.455	ENSPPAG00000037206	RAB5C	97	82.075	Pan_paniscus
ENSHCOG00000020238	-	100	80.000	ENSPPRG00000005745	RAB5C	97	81.604	Panthera_pardus
ENSHCOG00000020238	-	100	80.000	ENSPTIG00000008177	RAB5C	97	81.604	Panthera_tigris_altaica
ENSHCOG00000020238	-	100	80.455	ENSPTRG00000009194	RAB5C	97	82.075	Pan_troglodytes
ENSHCOG00000020238	-	99	78.082	ENSPKIG00000020112	-	96	79.048	Paramormyrops_kingsleyae
ENSHCOG00000020238	-	99	79.452	ENSPKIG00000001237	-	96	80.476	Paramormyrops_kingsleyae
ENSHCOG00000020238	-	97	80.543	ENSPMGG00000010792	rab5c	96	82.381	Periophthalmus_magnuspinnatus
ENSHCOG00000020238	-	100	80.455	ENSPEMG00000017971	Rab5c	97	82.075	Peromyscus_maniculatus_bairdii
ENSHCOG00000020238	-	99	76.037	ENSPMAG00000007867	rab5c	97	77.251	Petromyzon_marinus
ENSHCOG00000020238	-	99	74.654	ENSPMAG00000001399	rab5c	97	75.943	Petromyzon_marinus
ENSHCOG00000020238	-	99	73.214	ENSPMAG00000000008	rab5c	93	76.329	Petromyzon_marinus
ENSHCOG00000020238	-	100	79.545	ENSPCIG00000020225	-	97	81.604	Phascolarctos_cinereus
ENSHCOG00000020238	-	99	84.793	ENSPLAG00000016333	-	96	84.434	Poecilia_latipinna
ENSHCOG00000020238	-	100	80.263	ENSPLAG00000004790	rab5c	95	82.381	Poecilia_latipinna
ENSHCOG00000020238	-	94	85.116	ENSPMEG00000012614	-	95	84.038	Poecilia_mexicana
ENSHCOG00000020238	-	100	80.263	ENSPMEG00000011336	rab5c	95	82.381	Poecilia_mexicana
ENSHCOG00000020238	-	100	80.263	ENSPREG00000010146	rab5c	95	82.381	Poecilia_reticulata
ENSHCOG00000020238	-	87	89.005	ENSPREG00000022167	-	88	90.751	Poecilia_reticulata
ENSHCOG00000020238	-	100	80.455	ENSPPYG00000008398	RAB5C	97	82.075	Pongo_abelii
ENSHCOG00000020238	-	100	79.909	ENSPCAG00000016412	RAB5C	97	81.132	Procavia_capensis
ENSHCOG00000020238	-	100	80.000	ENSPCOG00000026327	RAB5C	97	81.604	Propithecus_coquereli
ENSHCOG00000020238	-	100	80.455	ENSPVAG00000003867	RAB5C	97	82.075	Pteropus_vampyrus
ENSHCOG00000020238	-	99	78.539	ENSPNYG00000010615	rab5c	95	80.000	Pundamilia_nyererei
ENSHCOG00000020238	-	99	84.545	ENSPNYG00000015851	-	99	85.455	Pundamilia_nyererei
ENSHCOG00000020238	-	96	82.160	ENSPNAG00000002218	-	99	83.412	Pygocentrus_nattereri
ENSHCOG00000020238	-	100	80.702	ENSPNAG00000028138	rab5c	95	82.857	Pygocentrus_nattereri
ENSHCOG00000020238	-	100	80.455	ENSRNOG00000018568	Rab5c	97	82.075	Rattus_norvegicus
ENSHCOG00000020238	-	100	80.455	ENSRBIG00000031376	RAB5C	97	82.075	Rhinopithecus_bieti
ENSHCOG00000020238	-	100	80.455	ENSRROG00000032895	RAB5C	97	82.075	Rhinopithecus_roxellana
ENSHCOG00000020238	-	100	80.000	ENSSBOG00000032552	-	97	81.604	Saimiri_boliviensis_boliviensis
ENSHCOG00000020238	-	100	80.000	ENSSHAG00000005267	-	97	81.604	Sarcophilus_harrisii
ENSHCOG00000020238	-	99	76.256	ENSSFOG00015009988	-	95	77.725	Scleropages_formosus
ENSHCOG00000020238	-	97	81.132	ENSSMAG00000007323	rab5c	95	81.429	Scophthalmus_maximus
ENSHCOG00000020238	-	100	80.702	ENSSDUG00000023008	rab5c	95	82.857	Seriola_dumerili
ENSHCOG00000020238	-	100	80.702	ENSSLDG00000017771	rab5c	95	82.857	Seriola_lalandi_dorsalis
ENSHCOG00000020238	-	100	80.909	ENSSPUG00000012950	-	97	82.075	Sphenodon_punctatus
ENSHCOG00000020238	-	100	79.825	ENSSPAG00000006436	rab5c	95	81.905	Stegastes_partitus
ENSHCOG00000020238	-	100	80.000	ENSSSCG00000032467	RAB5C	97	81.604	Sus_scrofa
ENSHCOG00000020238	-	100	79.386	ENSTRUG00000015590	rab5c	95	81.429	Takifugu_rubripes
ENSHCOG00000020238	-	95	81.429	ENSTNIG00000011711	rab5c	95	82.381	Tetraodon_nigroviridis
ENSHCOG00000020238	-	100	80.455	ENSTBEG00000007092	RAB5C	97	82.075	Tupaia_belangeri
ENSHCOG00000020238	-	100	79.545	ENSTTRG00000006673	RAB5C	97	81.132	Tursiops_truncatus
ENSHCOG00000020238	-	100	80.000	ENSUAMG00000024343	RAB5C	97	81.604	Ursus_americanus
ENSHCOG00000020238	-	100	80.000	ENSUMAG00000023270	RAB5C	97	81.604	Ursus_maritimus
ENSHCOG00000020238	-	95	87.500	ENSXCOG00000006300	-	96	83.645	Xiphophorus_couchianus
ENSHCOG00000020238	-	100	80.702	ENSXCOG00000016788	rab5c	98	82.464	Xiphophorus_couchianus
ENSHCOG00000020238	-	100	80.263	ENSXMAG00000003266	rab5c	95	82.381	Xiphophorus_maculatus
ENSHCOG00000020238	-	99	84.793	ENSXMAG00000022179	-	96	84.689	Xiphophorus_maculatus