EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000020252 (Gene tree)
Gene ID: 109522061
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 1225 bases
Position: chrKV880135.1:164586-165810
Accession: 109522061
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000027981	LSM	PF01423.22	8.3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000024677	-	866	XM_019880292	ENSHCOP00000027981	101 (aa)	XP_019735851	-

Gene Model

Click here to download ENSHCOG00000020252's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03018	RNA degradation	KEGG
hcq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000020252's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000020252	lsm7	70	38.028	ENSHCOG00000014878	snrpg	83	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000020252	lsm7	100	94.059	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSHCOG00000020252	lsm7	93	98.936	ENSAPOG00000015573	lsm7	81	98.936	Acanthochromis_polyacanthus
ENSHCOG00000020252	lsm7	100	93.069	ENSAMEG00000005484	LSM7	98	93.069	Ailuropoda_melanoleuca
ENSHCOG00000020252	lsm7	96	100.000	ENSACIG00000006498	lsm7	77	100.000	Amphilophus_citrinellus
ENSHCOG00000020252	lsm7	100	99.010	ENSAOCG00000001077	lsm7	92	99.010	Amphiprion_ocellaris
ENSHCOG00000020252	lsm7	100	99.010	ENSAPEG00000024447	lsm7	92	99.010	Amphiprion_percula
ENSHCOG00000020252	lsm7	100	99.010	ENSAPEG00000000694	lsm7	98	99.010	Amphiprion_percula
ENSHCOG00000020252	lsm7	100	99.010	ENSATEG00000008557	lsm7	98	99.010	Anabas_testudineus
ENSHCOG00000020252	lsm7	100	85.149	ENSANAG00000022222	-	98	85.149	Aotus_nancymaae
ENSHCOG00000020252	lsm7	100	94.059	ENSANAG00000037196	-	98	94.059	Aotus_nancymaae
ENSHCOG00000020252	lsm7	100	100.000	ENSACLG00000021021	lsm7	98	100.000	Astatotilapia_calliptera
ENSHCOG00000020252	lsm7	100	97.030	ENSAMXG00000037622	lsm7	98	97.030	Astyanax_mexicanus
ENSHCOG00000020252	lsm7	100	94.059	ENSBTAG00000004521	LSM7	98	94.059	Bos_taurus
ENSHCOG00000020252	lsm7	99	58.000	WBGene00003081	lsm-7	96	58.000	Caenorhabditis_elegans
ENSHCOG00000020252	lsm7	68	75.362	ENSCJAG00000039713	-	84	75.362	Callithrix_jacchus
ENSHCOG00000020252	lsm7	100	93.069	ENSCAFG00000019409	LSM7	98	93.069	Canis_familiaris
ENSHCOG00000020252	lsm7	100	93.069	ENSCAFG00020018168	LSM7	74	94.000	Canis_lupus_dingo
ENSHCOG00000020252	lsm7	100	94.059	ENSCHIG00000023663	LSM7	98	94.059	Capra_hircus
ENSHCOG00000020252	lsm7	70	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSHCOG00000020252	lsm7	100	94.059	ENSCPOG00000014025	LSM7	100	94.059	Cavia_porcellus
ENSHCOG00000020252	lsm7	100	94.059	ENSCCAG00000035456	LSM7	99	94.059	Cebus_capucinus
ENSHCOG00000020252	lsm7	100	94.059	ENSCATG00000023543	LSM7	98	94.059	Cercocebus_atys
ENSHCOG00000020252	lsm7	100	94.059	ENSCLAG00000011635	LSM7	98	94.059	Chinchilla_lanigera
ENSHCOG00000020252	lsm7	100	94.059	ENSCSAG00000011599	LSM7	98	94.059	Chlorocebus_sabaeus
ENSHCOG00000020252	lsm7	71	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSHCOG00000020252	lsm7	95	81.250	ENSCING00000022134	-	97	81.250	Ciona_intestinalis
ENSHCOG00000020252	lsm7	100	94.059	ENSCANG00000035525	LSM7	98	94.059	Colobus_angolensis_palliatus
ENSHCOG00000020252	lsm7	100	93.069	ENSCGRG00001000807	-	98	93.069	Cricetulus_griseus_chok1gshd
ENSHCOG00000020252	lsm7	89	83.333	ENSCGRG00001016005	-	92	83.333	Cricetulus_griseus_chok1gshd
ENSHCOG00000020252	lsm7	89	83.333	ENSCGRG00000006821	-	92	83.333	Cricetulus_griseus_crigri
ENSHCOG00000020252	lsm7	100	93.069	ENSCGRG00000014355	-	97	93.069	Cricetulus_griseus_crigri
ENSHCOG00000020252	lsm7	100	99.010	ENSCSEG00000014900	lsm7	86	99.010	Cynoglossus_semilaevis
ENSHCOG00000020252	lsm7	100	98.020	ENSCVAG00000021091	lsm7	94	98.020	Cyprinodon_variegatus
ENSHCOG00000020252	lsm7	100	98.020	ENSDARG00000058328	lsm7	98	98.020	Danio_rerio
ENSHCOG00000020252	lsm7	100	92.079	ENSDORG00000024460	Lsm7	99	92.079	Dipodomys_ordii
ENSHCOG00000020252	lsm7	96	72.449	FBgn0261068	LSm7	89	72.449	Drosophila_melanogaster
ENSHCOG00000020252	lsm7	100	91.089	ENSETEG00000012788	LSM7	99	91.089	Echinops_telfairi
ENSHCOG00000020252	lsm7	100	85.149	ENSEBUG00000016992	lsm7	97	85.149	Eptatretus_burgeri
ENSHCOG00000020252	lsm7	82	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSHCOG00000020252	lsm7	92	90.323	ENSECAG00000001440	LSM7	65	90.099	Equus_caballus
ENSHCOG00000020252	lsm7	100	93.069	ENSFCAG00000003445	LSM7	98	93.069	Felis_catus
ENSHCOG00000020252	lsm7	100	96.040	ENSFALG00000011912	LSM7	100	96.040	Ficedula_albicollis
ENSHCOG00000020252	lsm7	95	94.792	ENSFDAG00000007661	LSM7	100	94.792	Fukomys_damarensis
ENSHCOG00000020252	lsm7	100	98.020	ENSFHEG00000006349	lsm7	90	98.020	Fundulus_heteroclitus
ENSHCOG00000020252	lsm7	100	97.030	ENSGMOG00000013320	lsm7	98	97.030	Gadus_morhua
ENSHCOG00000020252	lsm7	100	98.020	ENSGAFG00000013902	lsm7	98	98.020	Gambusia_affinis
ENSHCOG00000020252	lsm7	100	98.020	ENSGACG00000010390	lsm7	98	98.020	Gasterosteus_aculeatus
ENSHCOG00000020252	lsm7	100	94.059	ENSGGOG00000010172	LSM7	98	94.059	Gorilla_gorilla
ENSHCOG00000020252	lsm7	100	100.000	ENSHBUG00000004616	lsm7	98	100.000	Haplochromis_burtoni
ENSHCOG00000020252	lsm7	100	94.059	ENSHGLG00000010587	LSM7	98	94.059	Heterocephalus_glaber_female
ENSHCOG00000020252	lsm7	100	94.059	ENSHGLG00100000852	LSM7	98	94.059	Heterocephalus_glaber_male
ENSHCOG00000020252	lsm7	100	95.050	ENSIPUG00000024724	lsm7	98	95.050	Ictalurus_punctatus
ENSHCOG00000020252	lsm7	100	94.059	ENSSTOG00000028372	LSM7	99	94.059	Ictidomys_tridecemlineatus
ENSHCOG00000020252	lsm7	99	94.000	ENSJJAG00000001936	Lsm7	97	94.000	Jaculus_jaculus
ENSHCOG00000020252	lsm7	100	98.020	ENSKMAG00000022151	lsm7	98	98.020	Kryptolebias_marmoratus
ENSHCOG00000020252	lsm7	100	99.010	ENSLBEG00000005203	lsm7	98	99.010	Labrus_bergylta
ENSHCOG00000020252	lsm7	92	95.699	ENSLACG00000015700	LSM7	98	95.050	Latimeria_chalumnae
ENSHCOG00000020252	lsm7	100	96.040	ENSLOCG00000004356	lsm7	98	96.040	Lepisosteus_oculatus
ENSHCOG00000020252	lsm7	100	94.059	ENSLAFG00000029302	LSM7	98	94.059	Loxodonta_africana
ENSHCOG00000020252	lsm7	100	94.059	ENSMFAG00000044572	LSM7	98	94.059	Macaca_fascicularis
ENSHCOG00000020252	lsm7	100	94.059	ENSMMUG00000000452	LSM7	99	94.059	Macaca_mulatta
ENSHCOG00000020252	lsm7	100	94.059	ENSMNEG00000004393	LSM7	98	94.059	Macaca_nemestrina
ENSHCOG00000020252	lsm7	100	94.059	ENSMLEG00000030852	LSM7	100	94.059	Mandrillus_leucophaeus
ENSHCOG00000020252	lsm7	100	100.000	ENSMAMG00000005410	lsm7	98	100.000	Mastacembelus_armatus
ENSHCOG00000020252	lsm7	100	100.000	ENSMZEG00005028055	lsm7	98	100.000	Maylandia_zebra
ENSHCOG00000020252	lsm7	100	96.040	ENSMGAG00000000750	LSM7	87	96.040	Meleagris_gallopavo
ENSHCOG00000020252	lsm7	100	93.069	ENSMAUG00000009276	Lsm7	98	93.069	Mesocricetus_auratus
ENSHCOG00000020252	lsm7	100	94.059	ENSMICG00000028619	-	98	94.059	Microcebus_murinus
ENSHCOG00000020252	lsm7	100	94.059	ENSMICG00000009988	-	98	94.059	Microcebus_murinus
ENSHCOG00000020252	lsm7	100	93.069	ENSMOCG00000016925	Lsm7	98	93.069	Microtus_ochrogaster
ENSHCOG00000020252	lsm7	100	99.010	ENSMMOG00000019645	lsm7	96	99.010	Mola_mola
ENSHCOG00000020252	lsm7	100	95.050	ENSMODG00000004722	LSM7	98	95.050	Monodelphis_domestica
ENSHCOG00000020252	lsm7	100	100.000	ENSMALG00000014511	lsm7	78	100.000	Monopterus_albus
ENSHCOG00000020252	lsm7	99	93.000	MGP_CAROLIEiJ_G0015607	Lsm7	97	93.000	Mus_caroli
ENSHCOG00000020252	lsm7	99	93.000	ENSMUSG00000035215	Lsm7	97	93.000	Mus_musculus
ENSHCOG00000020252	lsm7	99	93.000	MGP_PahariEiJ_G0031020	Lsm7	97	93.000	Mus_pahari
ENSHCOG00000020252	lsm7	99	93.000	MGP_SPRETEiJ_G0016425	Lsm7	97	93.000	Mus_spretus
ENSHCOG00000020252	lsm7	96	88.660	ENSMLUG00000024002	-	90	88.660	Myotis_lucifugus
ENSHCOG00000020252	lsm7	100	93.069	ENSMLUG00000013097	-	98	93.069	Myotis_lucifugus
ENSHCOG00000020252	lsm7	100	92.079	ENSNGAG00000021637	Lsm7	98	92.079	Nannospalax_galili
ENSHCOG00000020252	lsm7	100	100.000	ENSNBRG00000001237	-	81	100.000	Neolamprologus_brichardi
ENSHCOG00000020252	lsm7	100	100.000	ENSNBRG00000015770	lsm7	87	100.000	Neolamprologus_brichardi
ENSHCOG00000020252	lsm7	100	94.059	ENSNLEG00000002265	LSM7	98	94.059	Nomascus_leucogenys
ENSHCOG00000020252	lsm7	100	74.257	ENSODEG00000008190	-	98	74.257	Octodon_degus
ENSHCOG00000020252	lsm7	100	87.129	ENSODEG00000018769	-	98	87.129	Octodon_degus
ENSHCOG00000020252	lsm7	100	94.059	ENSODEG00000013590	-	98	94.059	Octodon_degus
ENSHCOG00000020252	lsm7	100	100.000	ENSONIG00000001801	lsm7	87	100.000	Oreochromis_niloticus
ENSHCOG00000020252	lsm7	100	99.010	ENSORLG00000023951	lsm7	98	99.010	Oryzias_latipes
ENSHCOG00000020252	lsm7	100	99.010	ENSORLG00020022226	lsm7	98	99.010	Oryzias_latipes_hni
ENSHCOG00000020252	lsm7	100	99.010	ENSORLG00015020044	lsm7	94	99.010	Oryzias_latipes_hsok
ENSHCOG00000020252	lsm7	100	99.010	ENSOMEG00000012806	lsm7	98	99.010	Oryzias_melastigma
ENSHCOG00000020252	lsm7	97	82.653	ENSOGAG00000024373	-	96	82.653	Otolemur_garnettii
ENSHCOG00000020252	lsm7	100	92.079	ENSOGAG00000000144	-	99	92.079	Otolemur_garnettii
ENSHCOG00000020252	lsm7	100	94.059	ENSOARG00000014013	LSM7	98	94.059	Ovis_aries
ENSHCOG00000020252	lsm7	100	94.059	ENSPPAG00000026500	LSM7	98	94.059	Pan_paniscus
ENSHCOG00000020252	lsm7	100	93.069	ENSPPRG00000008624	LSM7	98	93.069	Panthera_pardus
ENSHCOG00000020252	lsm7	92	93.548	ENSPTIG00000016252	LSM7	98	93.069	Panthera_tigris_altaica
ENSHCOG00000020252	lsm7	100	94.059	ENSPTRG00000010233	LSM7	98	94.059	Pan_troglodytes
ENSHCOG00000020252	lsm7	100	94.059	ENSPANG00000020668	LSM7	98	94.059	Papio_anubis
ENSHCOG00000020252	lsm7	100	97.030	ENSPKIG00000011325	lsm7	98	97.030	Paramormyrops_kingsleyae
ENSHCOG00000020252	lsm7	100	96.040	ENSPSIG00000017149	LSM7	89	96.040	Pelodiscus_sinensis
ENSHCOG00000020252	lsm7	100	99.010	ENSPMGG00000006498	lsm7	98	99.010	Periophthalmus_magnuspinnatus
ENSHCOG00000020252	lsm7	100	95.050	ENSPCIG00000030454	LSM7	99	95.050	Phascolarctos_cinereus
ENSHCOG00000020252	lsm7	100	97.030	ENSPFOG00000012467	lsm7	89	97.030	Poecilia_formosa
ENSHCOG00000020252	lsm7	100	97.030	ENSPLAG00000000252	lsm7	94	97.030	Poecilia_latipinna
ENSHCOG00000020252	lsm7	100	97.030	ENSPMEG00000000587	lsm7	94	97.030	Poecilia_mexicana
ENSHCOG00000020252	lsm7	77	75.949	ENSPREG00000016718	lsm7	63	75.949	Poecilia_reticulata
ENSHCOG00000020252	lsm7	72	94.521	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSHCOG00000020252	lsm7	100	94.059	ENSPCOG00000017177	LSM7	99	94.059	Propithecus_coquereli
ENSHCOG00000020252	lsm7	100	100.000	ENSPNYG00000006938	lsm7	98	100.000	Pundamilia_nyererei
ENSHCOG00000020252	lsm7	100	97.030	ENSPNAG00000010141	lsm7	99	97.030	Pygocentrus_nattereri
ENSHCOG00000020252	lsm7	99	94.000	ENSRNOG00000019552	Lsm7	97	94.000	Rattus_norvegicus
ENSHCOG00000020252	lsm7	100	94.059	ENSRBIG00000035978	LSM7	98	94.059	Rhinopithecus_bieti
ENSHCOG00000020252	lsm7	100	94.059	ENSRROG00000034044	LSM7	98	94.059	Rhinopithecus_roxellana
ENSHCOG00000020252	lsm7	85	48.315	YNL147W	-	77	48.315	Saccharomyces_cerevisiae
ENSHCOG00000020252	lsm7	100	94.059	ENSSBOG00000034899	LSM7	98	94.059	Saimiri_boliviensis_boliviensis
ENSHCOG00000020252	lsm7	100	95.050	ENSSFOG00015006728	lsm7	98	95.050	Scleropages_formosus
ENSHCOG00000020252	lsm7	100	99.010	ENSSMAG00000004195	lsm7	93	99.010	Scophthalmus_maximus
ENSHCOG00000020252	lsm7	100	99.010	ENSSDUG00000001863	lsm7	98	99.010	Seriola_dumerili
ENSHCOG00000020252	lsm7	100	99.010	ENSSLDG00000016339	lsm7	98	99.010	Seriola_lalandi_dorsalis
ENSHCOG00000020252	lsm7	100	99.010	ENSSPAG00000015221	lsm7	98	99.010	Stegastes_partitus
ENSHCOG00000020252	lsm7	100	94.059	ENSSSCG00000013463	LSM7	99	94.059	Sus_scrofa
ENSHCOG00000020252	lsm7	100	96.040	ENSTGUG00000000067	LSM7	100	96.040	Taeniopygia_guttata
ENSHCOG00000020252	lsm7	100	97.030	ENSTRUG00000022913	lsm7	98	97.030	Takifugu_rubripes
ENSHCOG00000020252	lsm7	100	97.030	ENSTNIG00000015525	lsm7	98	97.030	Tetraodon_nigroviridis
ENSHCOG00000020252	lsm7	69	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSHCOG00000020252	lsm7	100	93.069	ENSUAMG00000000912	LSM7	84	93.069	Ursus_americanus
ENSHCOG00000020252	lsm7	92	93.548	ENSUMAG00000006556	LSM7	78	94.000	Ursus_maritimus
ENSHCOG00000020252	lsm7	70	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSHCOG00000020252	lsm7	100	94.059	ENSXETG00000022166	lsm7	100	94.059	Xenopus_tropicalis
ENSHCOG00000020252	lsm7	100	98.020	ENSXCOG00000002572	lsm7	99	98.020	Xiphophorus_couchianus
ENSHCOG00000020252	lsm7	100	98.020	ENSXMAG00000018630	lsm7	98	98.020	Xiphophorus_maculatus