EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000020771 (Gene tree)
Gene ID: 109515339
Gene Symbol: rbfox1l
Alias: Fox-1|ZFmu1A11s|a2bp1l|hm:zeh0082|zeh0082
Full Name: RNA binding protein fox-1 homolog 1-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 9991 bases
Position: chrKV879925.1:1135458-1145448
Accession: 109515339
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000016961	Fox-1_C	PF12414.8	1.4e-37	1	1
ENSHCOP00000016954	Fox-1_C	PF12414.8	1.5e-37	1	1
ENSHCOP00000016954	RRM_1	PF00076.22	6.8e-18	1	1
ENSHCOP00000016961	RRM_1	PF00076.22	7.2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000025207	-	2135	XM_019869043	ENSHCOP00000016961	383 (aa)	XP_019724602	UPI00094E1318
ENSHCOT00000025199	-	1906	XM_019869044	ENSHCOP00000016954	371 (aa)	XP_019724603	UPI00094E290B

Gene Model

Click here to download ENSHCOG00000020771's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000020771's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000020771	rbfox1l	62	66.809	ENSHCOG00000016419	rbfox1	63	65.957
ENSHCOG00000020771	rbfox1l	65	66.284	ENSHCOG00000016102	rbfox2	56	67.433
ENSHCOG00000020771	rbfox1l	82	54.605	ENSHCOG00000001863	RBFOX3	64	65.106
ENSHCOG00000020771	rbfox1l	82	54.313	ENSHCOG00000007444	RBFOX3	83	52.537
ENSHCOG00000020771	rbfox1l	66	63.100	ENSHCOG00000005662	-	59	64.286

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000020771	rbfox1l	97	85.215	ENSAPOG00000016304	rbfox1l	98	83.602	Acanthochromis_polyacanthus
ENSHCOG00000020771	rbfox1l	100	79.427	ENSACIG00000006441	rbfox1l	100	79.427	Amphilophus_citrinellus
ENSHCOG00000020771	rbfox1l	86	81.191	ENSAOCG00000020938	rbfox1l	99	78.994	Amphiprion_ocellaris
ENSHCOG00000020771	rbfox1l	100	85.156	ENSAPEG00000008232	rbfox1l	100	84.115	Amphiprion_percula
ENSHCOG00000020771	rbfox1l	100	84.115	ENSATEG00000022649	rbfox1l	100	83.854	Anabas_testudineus
ENSHCOG00000020771	rbfox1l	66	73.413	ENSACAG00000011931	-	89	74.089	Anolis_carolinensis
ENSHCOG00000020771	rbfox1l	100	84.375	ENSACLG00000021394	rbfox1l	100	84.115	Astatotilapia_calliptera
ENSHCOG00000020771	rbfox1l	100	84.974	ENSAMXG00000010470	rbfox1l	100	84.974	Astyanax_mexicanus
ENSHCOG00000020771	rbfox1l	100	55.112	ENSCPBG00000010944	-	100	54.950	Chrysemys_picta_bellii
ENSHCOG00000020771	rbfox1l	100	85.938	ENSCSEG00000018898	rbfox1l	100	85.938	Cynoglossus_semilaevis
ENSHCOG00000020771	rbfox1l	100	84.896	ENSCVAG00000007986	rbfox1l	100	83.073	Cyprinodon_variegatus
ENSHCOG00000020771	rbfox1l	100	83.420	ENSDARG00000021184	rbfox1l	100	83.420	Danio_rerio
ENSHCOG00000020771	rbfox1l	100	79.442	ENSELUG00000015077	rbfox1l	100	80.711	Esox_lucius
ENSHCOG00000020771	rbfox1l	79	92.683	ENSFHEG00000016557	rbfox1l	95	92.683	Fundulus_heteroclitus
ENSHCOG00000020771	rbfox1l	100	82.292	ENSGMOG00000005040	rbfox1l	100	81.771	Gadus_morhua
ENSHCOG00000020771	rbfox1l	96	83.989	ENSGAFG00000013211	rbfox1l	98	82.865	Gambusia_affinis
ENSHCOG00000020771	rbfox1l	100	85.417	ENSGACG00000010757	rbfox1l	100	85.156	Gasterosteus_aculeatus
ENSHCOG00000020771	rbfox1l	70	68.846	ENSGAGG00000012440	-	84	73.361	Gopherus_agassizii
ENSHCOG00000020771	rbfox1l	100	84.375	ENSHBUG00000013406	rbfox1l	100	84.115	Haplochromis_burtoni
ENSHCOG00000020771	rbfox1l	99	77.749	ENSIPUG00000000065	rbfox1l	99	78.492	Ictalurus_punctatus
ENSHCOG00000020771	rbfox1l	100	83.679	ENSKMAG00000005146	rbfox1l	100	84.456	Kryptolebias_marmoratus
ENSHCOG00000020771	rbfox1l	100	88.802	ENSLBEG00000017089	rbfox1l	100	88.542	Labrus_bergylta
ENSHCOG00000020771	rbfox1l	100	86.458	ENSMAMG00000019480	rbfox1l	100	86.198	Mastacembelus_armatus
ENSHCOG00000020771	rbfox1l	100	84.375	ENSMZEG00005016374	rbfox1l	100	84.115	Maylandia_zebra
ENSHCOG00000020771	rbfox1l	100	86.162	ENSMMOG00000016530	rbfox1l	100	85.901	Mola_mola
ENSHCOG00000020771	rbfox1l	100	84.375	ENSMALG00000009384	rbfox1l	100	83.333	Monopterus_albus
ENSHCOG00000020771	rbfox1l	100	84.115	ENSNBRG00000003346	rbfox1l	100	83.854	Neolamprologus_brichardi
ENSHCOG00000020771	rbfox1l	100	84.896	ENSONIG00000012754	rbfox1l	100	84.635	Oreochromis_niloticus
ENSHCOG00000020771	rbfox1l	100	85.677	ENSORLG00000011269	rbfox1l	100	83.073	Oryzias_latipes
ENSHCOG00000020771	rbfox1l	100	85.677	ENSORLG00020000162	rbfox1l	100	83.854	Oryzias_latipes_hni
ENSHCOG00000020771	rbfox1l	100	85.938	ENSORLG00015013464	rbfox1l	100	84.115	Oryzias_latipes_hsok
ENSHCOG00000020771	rbfox1l	100	86.979	ENSOMEG00000010584	rbfox1l	100	84.375	Oryzias_melastigma
ENSHCOG00000020771	rbfox1l	100	84.156	ENSPKIG00000012029	rbfox1l	100	83.896	Paramormyrops_kingsleyae
ENSHCOG00000020771	rbfox1l	100	79.740	ENSPMGG00000012082	rbfox1l	100	79.221	Periophthalmus_magnuspinnatus
ENSHCOG00000020771	rbfox1l	100	85.417	ENSPFOG00000009338	rbfox1l	100	84.375	Poecilia_formosa
ENSHCOG00000020771	rbfox1l	88	77.134	ENSPLAG00000012816	rbfox1l	99	77.134	Poecilia_latipinna
ENSHCOG00000020771	rbfox1l	100	81.250	ENSPMEG00000017597	rbfox1l	100	80.208	Poecilia_mexicana
ENSHCOG00000020771	rbfox1l	100	81.250	ENSPREG00000007940	rbfox1l	100	80.208	Poecilia_reticulata
ENSHCOG00000020771	rbfox1l	100	84.115	ENSPNYG00000002098	rbfox1l	100	83.854	Pundamilia_nyererei
ENSHCOG00000020771	rbfox1l	100	84.755	ENSPNAG00000001620	rbfox1l	100	85.271	Pygocentrus_nattereri
ENSHCOG00000020771	rbfox1l	100	83.117	ENSSFOG00015000675	rbfox1l	100	83.117	Scleropages_formosus
ENSHCOG00000020771	rbfox1l	100	86.198	ENSSMAG00000013090	rbfox1l	100	85.156	Scophthalmus_maximus
ENSHCOG00000020771	rbfox1l	100	82.051	ENSSDUG00000008705	rbfox1l	100	83.846	Seriola_dumerili
ENSHCOG00000020771	rbfox1l	100	82.519	ENSSLDG00000022256	rbfox1l	100	84.319	Seriola_lalandi_dorsalis
ENSHCOG00000020771	rbfox1l	100	85.677	ENSSPAG00000016620	rbfox1l	100	84.635	Stegastes_partitus
ENSHCOG00000020771	rbfox1l	96	84.324	ENSTRUG00000015905	rbfox1l	100	84.054	Takifugu_rubripes
ENSHCOG00000020771	rbfox1l	67	83.582	ENSTNIG00000008088	rbfox1l	97	84.291	Tetraodon_nigroviridis
ENSHCOG00000020771	rbfox1l	100	84.635	ENSXMAG00000023471	rbfox1l	100	83.854	Xiphophorus_maculatus