EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000020968 (Gene tree)
Gene ID: 109515288
Gene Symbol: cnot3a
Alias: fb73b06|fc17h07|wu:fb73b06|wu:fc17h07|zgc:92813
Full Name: CCR4-NOT transcription complex subunit 3
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 15919 bases
Position: chrKV879925.1:1073516-1089434
Accession: 109515288
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000028332	Not3	PF04065.15	2.9e-97	1	1
ENSHCOP00000028339	Not3	PF04065.15	3.3e-97	1	1
ENSHCOP00000028342	Not3	PF04065.15	3.4e-97	1	1
ENSHCOP00000028332	NOT2_3_5	PF04153.18	2e-38	1	1
ENSHCOP00000028339	NOT2_3_5	PF04153.18	2.2e-38	1	1
ENSHCOP00000028342	NOT2_3_5	PF04153.18	2.3e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000025351	-	2514	-	ENSHCOP00000028332	837 (aa)	-	-
ENSHCOT00000025379	-	4192	XM_019868955	ENSHCOP00000028339	888 (aa)	XP_019724514	UPI00094EFAA2
ENSHCOT00000028760	-	4249	XM_019868953	ENSHCOP00000028342	907 (aa)	XP_019724512	UPI00094E5312

Gene Model

Click here to download ENSHCOG00000020968's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000020968's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000020968	cnot3a	67	88.852	ENSG00000088038	CNOT3	100	93.814	Homo_sapiens
ENSHCOG00000020968	cnot3a	59	90.391	ENSAPOG00000015499	CNOT3	92	90.391	Acanthochromis_polyacanthus
ENSHCOG00000020968	cnot3a	65	92.925	ENSAPOG00000015002	cnot3b	76	88.087	Acanthochromis_polyacanthus
ENSHCOG00000020968	cnot3a	67	89.180	ENSAMEG00000004528	CNOT3	85	89.474	Ailuropoda_melanoleuca
ENSHCOG00000020968	cnot3a	66	92.411	ENSACIG00000003652	cnot3b	97	92.411	Amphilophus_citrinellus
ENSHCOG00000020968	cnot3a	100	83.860	ENSACIG00000006635	cnot3a	100	100.000	Amphilophus_citrinellus
ENSHCOG00000020968	cnot3a	97	60.523	ENSAOCG00000018385	-	88	76.786	Amphiprion_ocellaris
ENSHCOG00000020968	cnot3a	100	88.901	ENSAPEG00000006624	cnot3a	100	86.771	Amphiprion_percula
ENSHCOG00000020968	cnot3a	97	63.497	ENSAPEG00000002640	cnot3b	96	92.958	Amphiprion_percula
ENSHCOG00000020968	cnot3a	100	87.165	ENSATEG00000022737	cnot3a	100	85.156	Anabas_testudineus
ENSHCOG00000020968	cnot3a	78	93.162	ENSACAG00000016085	CNOT3	88	89.474	Anolis_carolinensis
ENSHCOG00000020968	cnot3a	75	86.328	ENSANAG00000025756	CNOT3	84	89.145	Aotus_nancymaae
ENSHCOG00000020968	cnot3a	100	85.651	ENSACLG00000021136	cnot3a	100	84.316	Astatotilapia_calliptera
ENSHCOG00000020968	cnot3a	100	64.712	ENSACLG00000016702	cnot3b	93	78.151	Astatotilapia_calliptera
ENSHCOG00000020968	cnot3a	100	71.765	ENSAMXG00000012359	cnot3a	100	71.659	Astyanax_mexicanus
ENSHCOG00000020968	cnot3a	97	85.520	ENSAMXG00000009447	cnot3b	93	93.976	Astyanax_mexicanus
ENSHCOG00000020968	cnot3a	68	87.781	ENSBTAG00000014900	CNOT3	85	89.145	Bos_taurus
ENSHCOG00000020968	cnot3a	75	86.328	ENSCJAG00000001094	CNOT3	84	89.145	Callithrix_jacchus
ENSHCOG00000020968	cnot3a	67	88.852	ENSCAFG00000002699	CNOT3	84	89.145	Canis_familiaris
ENSHCOG00000020968	cnot3a	67	88.852	ENSCAFG00020018359	CNOT3	84	89.145	Canis_lupus_dingo
ENSHCOG00000020968	cnot3a	63	85.806	ENSCHIG00000015302	CNOT3	77	87.129	Capra_hircus
ENSHCOG00000020968	cnot3a	75	86.328	ENSTSYG00000008058	CNOT3	85	89.145	Carlito_syrichta
ENSHCOG00000020968	cnot3a	68	87.781	ENSCAPG00000009533	CNOT3	85	89.145	Cavia_aperea
ENSHCOG00000020968	cnot3a	79	86.328	ENSCPOG00000020741	CNOT3	85	89.145	Cavia_porcellus
ENSHCOG00000020968	cnot3a	75	86.328	ENSCCAG00000036290	CNOT3	84	89.145	Cebus_capucinus
ENSHCOG00000020968	cnot3a	67	88.852	ENSCATG00000030324	CNOT3	85	89.145	Cercocebus_atys
ENSHCOG00000020968	cnot3a	78	86.328	ENSCLAG00000003302	CNOT3	100	85.366	Chinchilla_lanigera
ENSHCOG00000020968	cnot3a	67	88.852	ENSCSAG00000001900	CNOT3	85	89.145	Chlorocebus_sabaeus
ENSHCOG00000020968	cnot3a	75	86.328	ENSCPBG00000011655	CNOT3	89	88.816	Chrysemys_picta_bellii
ENSHCOG00000020968	cnot3a	72	69.099	ENSCING00000000293	-	72	67.769	Ciona_intestinalis
ENSHCOG00000020968	cnot3a	68	87.460	ENSCANG00000013408	CNOT3	85	89.145	Colobus_angolensis_palliatus
ENSHCOG00000020968	cnot3a	78	89.180	ENSCGRG00001000855	Cnot3	85	89.474	Cricetulus_griseus_chok1gshd
ENSHCOG00000020968	cnot3a	84	90.558	ENSCSEG00000016892	cnot3b	70	81.250	Cynoglossus_semilaevis
ENSHCOG00000020968	cnot3a	96	96.313	ENSCSEG00000003574	cnot3a	100	84.017	Cynoglossus_semilaevis
ENSHCOG00000020968	cnot3a	100	82.589	ENSCVAG00000008168	cnot3a	100	80.357	Cyprinodon_variegatus
ENSHCOG00000020968	cnot3a	100	74.002	ENSDARG00000007135	cnot3a	90	86.486	Danio_rerio
ENSHCOG00000020968	cnot3a	54	52.896	ENSDARG00000019842	cnot3b	58	86.574	Danio_rerio
ENSHCOG00000020968	cnot3a	67	88.852	ENSDNOG00000045972	CNOT3	85	89.145	Dasypus_novemcinctus
ENSHCOG00000020968	cnot3a	80	88.852	ENSDORG00000008021	Cnot3	100	80.460	Dipodomys_ordii
ENSHCOG00000020968	cnot3a	52	64.130	FBgn0033029	Not3	50	67.857	Drosophila_melanogaster
ENSHCOG00000020968	cnot3a	52	100.000	ENSETEG00000006305	CNOT3	63	100.000	Echinops_telfairi
ENSHCOG00000020968	cnot3a	67	71.429	ENSEBUG00000010437	cnot3a	65	75.581	Eptatretus_burgeri
ENSHCOG00000020968	cnot3a	67	88.852	ENSEASG00005021591	CNOT3	84	89.145	Equus_asinus_asinus
ENSHCOG00000020968	cnot3a	67	88.852	ENSECAG00000023181	CNOT3	84	89.145	Equus_caballus
ENSHCOG00000020968	cnot3a	100	64.694	ENSELUG00000000953	cnot3b	91	86.175	Esox_lucius
ENSHCOG00000020968	cnot3a	97	93.151	ENSELUG00000014743	cnot3a	88	93.607	Esox_lucius
ENSHCOG00000020968	cnot3a	80	86.328	ENSFCAG00000014042	CNOT3	85	89.145	Felis_catus
ENSHCOG00000020968	cnot3a	100	81.490	ENSFHEG00000023166	cnot3a	95	98.718	Fundulus_heteroclitus
ENSHCOG00000020968	cnot3a	100	65.021	ENSFHEG00000001696	cnot3b	50	86.235	Fundulus_heteroclitus
ENSHCOG00000020968	cnot3a	94	78.060	ENSGMOG00000005365	cnot3a	98	75.289	Gadus_morhua
ENSHCOG00000020968	cnot3a	100	80.065	ENSGAFG00000013094	cnot3a	100	81.818	Gambusia_affinis
ENSHCOG00000020968	cnot3a	94	79.907	ENSGACG00000011489	cnot3a	98	79.907	Gasterosteus_aculeatus
ENSHCOG00000020968	cnot3a	99	58.658	ENSGAGG00000012677	CNOT3	87	85.714	Gopherus_agassizii
ENSHCOG00000020968	cnot3a	72	93.162	ENSGGOG00000012996	CNOT3	84	89.145	Gorilla_gorilla
ENSHCOG00000020968	cnot3a	99	58.395	ENSHBUG00000019699	cnot3b	81	90.094	Haplochromis_burtoni
ENSHCOG00000020968	cnot3a	100	85.762	ENSHBUG00000005275	cnot3a	100	84.427	Haplochromis_burtoni
ENSHCOG00000020968	cnot3a	68	87.781	ENSHGLG00000008821	CNOT3	100	80.460	Heterocephalus_glaber_female
ENSHCOG00000020968	cnot3a	61	83.908	ENSHGLG00100006181	CNOT3	100	80.460	Heterocephalus_glaber_male
ENSHCOG00000020968	cnot3a	100	64.817	ENSIPUG00000009046	cnot3b	100	62.678	Ictalurus_punctatus
ENSHCOG00000020968	cnot3a	97	85.520	ENSIPUG00000000167	cnot3	86	82.727	Ictalurus_punctatus
ENSHCOG00000020968	cnot3a	67	88.852	ENSSTOG00000028248	CNOT3	85	89.145	Ictidomys_tridecemlineatus
ENSHCOG00000020968	cnot3a	67	89.180	ENSJJAG00000014594	Cnot3	100	80.460	Jaculus_jaculus
ENSHCOG00000020968	cnot3a	100	84.004	ENSKMAG00000004863	cnot3a	98	95.783	Kryptolebias_marmoratus
ENSHCOG00000020968	cnot3a	100	64.817	ENSKMAG00000018723	cnot3b	54	85.606	Kryptolebias_marmoratus
ENSHCOG00000020968	cnot3a	73	97.009	ENSLBEG00000017296	cnot3a	95	93.119	Labrus_bergylta
ENSHCOG00000020968	cnot3a	92	85.405	ENSLBEG00000018278	cnot3b	72	89.474	Labrus_bergylta
ENSHCOG00000020968	cnot3a	69	85.852	ENSLACG00000009742	CNOT3	88	87.500	Latimeria_chalumnae
ENSHCOG00000020968	cnot3a	52	94.611	ENSLOCG00000000005	cnot3b	76	95.181	Lepisosteus_oculatus
ENSHCOG00000020968	cnot3a	67	88.235	ENSLAFG00000022133	CNOT3	84	88.525	Loxodonta_africana
ENSHCOG00000020968	cnot3a	67	88.852	ENSMFAG00000040073	CNOT3	85	89.145	Macaca_fascicularis
ENSHCOG00000020968	cnot3a	61	92.437	ENSMMUG00000009698	CNOT3	100	96.078	Macaca_mulatta
ENSHCOG00000020968	cnot3a	67	88.852	ENSMNEG00000036750	CNOT3	85	89.145	Macaca_nemestrina
ENSHCOG00000020968	cnot3a	67	88.852	ENSMLEG00000036579	CNOT3	84	89.145	Mandrillus_leucophaeus
ENSHCOG00000020968	cnot3a	100	85.185	ENSMAMG00000019397	cnot3a	100	85.294	Mastacembelus_armatus
ENSHCOG00000020968	cnot3a	100	64.496	ENSMAMG00000019357	cnot3b	52	84.848	Mastacembelus_armatus
ENSHCOG00000020968	cnot3a	100	65.126	ENSMZEG00005002466	cnot3b	93	78.151	Maylandia_zebra
ENSHCOG00000020968	cnot3a	100	85.651	ENSMZEG00005016304	cnot3a	100	84.316	Maylandia_zebra
ENSHCOG00000020968	cnot3a	67	89.180	ENSMAUG00000014996	Cnot3	85	89.474	Mesocricetus_auratus
ENSHCOG00000020968	cnot3a	67	88.852	ENSMICG00000002370	CNOT3	84	89.145	Microcebus_murinus
ENSHCOG00000020968	cnot3a	62	90.171	ENSMMOG00000013086	cnot3b	73	89.451	Mola_mola
ENSHCOG00000020968	cnot3a	99	86.475	ENSMMOG00000016446	cnot3a	97	94.017	Mola_mola
ENSHCOG00000020968	cnot3a	55	93.162	ENSMODG00000004066	CNOT3	73	89.145	Monodelphis_domestica
ENSHCOG00000020968	cnot3a	71	89.474	ENSMALG00000004936	cnot3b	74	85.522	Monopterus_albus
ENSHCOG00000020968	cnot3a	100	84.902	ENSMALG00000009204	cnot3a	100	84.026	Monopterus_albus
ENSHCOG00000020968	cnot3a	67	89.180	MGP_CAROLIEiJ_G0029095	Cnot3	100	98.000	Mus_caroli
ENSHCOG00000020968	cnot3a	78	86.719	ENSMUSG00000035632	Cnot3	100	98.000	Mus_musculus
ENSHCOG00000020968	cnot3a	67	89.180	MGP_PahariEiJ_G0020964	Cnot3	100	98.000	Mus_pahari
ENSHCOG00000020968	cnot3a	78	86.719	MGP_SPRETEiJ_G0030148	Cnot3	100	98.000	Mus_spretus
ENSHCOG00000020968	cnot3a	68	87.781	ENSMPUG00000010352	CNOT3	85	89.145	Mustela_putorius_furo
ENSHCOG00000020968	cnot3a	67	88.852	ENSNGAG00000013266	Cnot3	85	89.145	Nannospalax_galili
ENSHCOG00000020968	cnot3a	100	85.762	ENSNBRG00000002401	cnot3a	100	84.427	Neolamprologus_brichardi
ENSHCOG00000020968	cnot3a	83	85.235	ENSNBRG00000003336	cnot3b	95	89.823	Neolamprologus_brichardi
ENSHCOG00000020968	cnot3a	67	88.852	ENSNLEG00000006272	CNOT3	84	89.145	Nomascus_leucogenys
ENSHCOG00000020968	cnot3a	78	86.328	ENSODEG00000000705	CNOT3	100	88.608	Octodon_degus
ENSHCOG00000020968	cnot3a	100	65.792	ENSONIG00000007047	cnot3b	100	66.060	Oreochromis_niloticus
ENSHCOG00000020968	cnot3a	100	85.621	ENSONIG00000006568	cnot3a	100	84.314	Oreochromis_niloticus
ENSHCOG00000020968	cnot3a	67	88.852	ENSOCUG00000007691	CNOT3	85	89.145	Oryctolagus_cuniculus
ENSHCOG00000020968	cnot3a	100	85.464	ENSORLG00000011174	cnot3a	100	83.607	Oryzias_latipes
ENSHCOG00000020968	cnot3a	100	85.355	ENSORLG00020008009	cnot3a	100	83.497	Oryzias_latipes_hni
ENSHCOG00000020968	cnot3a	100	85.027	ENSORLG00015013729	cnot3a	100	83.060	Oryzias_latipes_hsok
ENSHCOG00000020968	cnot3a	100	86.120	ENSOMEG00000010309	cnot3a	85	99.573	Oryzias_melastigma
ENSHCOG00000020968	cnot3a	63	90.551	ENSOGAG00000006945	CNOT3	84	89.145	Otolemur_garnettii
ENSHCOG00000020968	cnot3a	72	93.162	ENSPPAG00000002748	CNOT3	84	89.145	Pan_paniscus
ENSHCOG00000020968	cnot3a	80	86.328	ENSPPRG00000011705	CNOT3	85	89.145	Panthera_pardus
ENSHCOG00000020968	cnot3a	64	93.162	ENSPTIG00000008781	CNOT3	96	89.262	Panthera_tigris_altaica
ENSHCOG00000020968	cnot3a	72	93.162	ENSPTRG00000046717	-	84	89.145	Pan_troglodytes
ENSHCOG00000020968	cnot3a	72	93.162	ENSPTRG00000011444	CNOT3	84	89.145	Pan_troglodytes
ENSHCOG00000020968	cnot3a	67	88.852	ENSPANG00000009375	CNOT3	85	89.145	Papio_anubis
ENSHCOG00000020968	cnot3a	100	66.667	ENSPKIG00000011733	CNOT3	100	65.823	Paramormyrops_kingsleyae
ENSHCOG00000020968	cnot3a	62	94.872	ENSPKIG00000015967	-	87	94.894	Paramormyrops_kingsleyae
ENSHCOG00000020968	cnot3a	78	86.719	ENSPEMG00000024185	Cnot3	85	89.474	Peromyscus_maniculatus_bairdii
ENSHCOG00000020968	cnot3a	68	88.525	ENSPCIG00000023018	CNOT3	90	88.816	Phascolarctos_cinereus
ENSHCOG00000020968	cnot3a	100	84.211	ENSPFOG00000008693	cnot3a	91	95.364	Poecilia_formosa
ENSHCOG00000020968	cnot3a	100	83.991	ENSPLAG00000013324	cnot3a	100	81.818	Poecilia_latipinna
ENSHCOG00000020968	cnot3a	100	84.978	ENSPMEG00000017718	cnot3a	100	82.127	Poecilia_mexicana
ENSHCOG00000020968	cnot3a	100	82.116	ENSPREG00000007592	cnot3a	97	98.718	Poecilia_reticulata
ENSHCOG00000020968	cnot3a	67	88.525	ENSPPYG00000010372	CNOT3	84	88.816	Pongo_abelii
ENSHCOG00000020968	cnot3a	63	91.525	ENSPCAG00000011999	CNOT3	56	91.525	Procavia_capensis
ENSHCOG00000020968	cnot3a	67	88.852	ENSPCOG00000017673	CNOT3	84	89.145	Propithecus_coquereli
ENSHCOG00000020968	cnot3a	75	92.735	ENSPVAG00000015564	CNOT3	70	88.487	Pteropus_vampyrus
ENSHCOG00000020968	cnot3a	100	85.651	ENSPNYG00000002282	cnot3a	100	84.316	Pundamilia_nyererei
ENSHCOG00000020968	cnot3a	99	60.622	ENSPNYG00000003358	cnot3b	99	60.261	Pundamilia_nyererei
ENSHCOG00000020968	cnot3a	100	68.133	ENSPNAG00000027459	cnot3b	95	57.271	Pygocentrus_nattereri
ENSHCOG00000020968	cnot3a	84	96.186	ENSPNAG00000017679	cnot3a	97	96.186	Pygocentrus_nattereri
ENSHCOG00000020968	cnot3a	80	89.180	ENSRNOG00000053234	Cnot3	85	89.474	Rattus_norvegicus
ENSHCOG00000020968	cnot3a	76	90.551	ENSRBIG00000031025	CNOT3	85	89.145	Rhinopithecus_bieti
ENSHCOG00000020968	cnot3a	76	90.551	ENSRROG00000003872	CNOT3	85	89.145	Rhinopithecus_roxellana
ENSHCOG00000020968	cnot3a	75	86.328	ENSSBOG00000030268	CNOT3	84	89.145	Saimiri_boliviensis_boliviensis
ENSHCOG00000020968	cnot3a	100	69.828	ENSSFOG00015019203	-	91	86.758	Scleropages_formosus
ENSHCOG00000020968	cnot3a	100	70.227	ENSSFOG00015000248	cnot3	87	87.671	Scleropages_formosus
ENSHCOG00000020968	cnot3a	100	65.456	ENSSMAG00000016031	cnot3b	51	84.848	Scophthalmus_maximus
ENSHCOG00000020968	cnot3a	100	85.477	ENSSMAG00000013235	cnot3a	100	84.257	Scophthalmus_maximus
ENSHCOG00000020968	cnot3a	100	87.595	ENSSDUG00000008181	cnot3a	100	99.573	Seriola_dumerili
ENSHCOG00000020968	cnot3a	100	66.840	ENSSDUG00000003428	cnot3b	51	86.175	Seriola_dumerili
ENSHCOG00000020968	cnot3a	96	86.044	ENSSLDG00000014733	cnot3a	99	85.121	Seriola_lalandi_dorsalis
ENSHCOG00000020968	cnot3a	100	66.840	ENSSLDG00000014376	cnot3b	51	86.175	Seriola_lalandi_dorsalis
ENSHCOG00000020968	cnot3a	83	86.328	ENSSPUG00000008510	CNOT3	94	89.145	Sphenodon_punctatus
ENSHCOG00000020968	cnot3a	86	99.219	ENSSPAG00000003858	cnot3a	93	98.227	Stegastes_partitus
ENSHCOG00000020968	cnot3a	67	88.852	ENSSSCG00000003264	CNOT3	84	89.145	Sus_scrofa
ENSHCOG00000020968	cnot3a	97	95.434	ENSTRUG00000015732	cnot3a	100	84.809	Takifugu_rubripes
ENSHCOG00000020968	cnot3a	90	94.578	ENSTNIG00000008082	cnot3a	100	80.716	Tetraodon_nigroviridis
ENSHCOG00000020968	cnot3a	94	62.741	ENSTNIG00000005663	cnot3b	100	61.697	Tetraodon_nigroviridis
ENSHCOG00000020968	cnot3a	67	89.180	ENSUAMG00000005234	CNOT3	85	89.474	Ursus_americanus
ENSHCOG00000020968	cnot3a	56	92.857	ENSUMAG00000010934	CNOT3	89	92.857	Ursus_maritimus
ENSHCOG00000020968	cnot3a	67	88.852	ENSVVUG00000008239	CNOT3	83	89.145	Vulpes_vulpes
ENSHCOG00000020968	cnot3a	76	86.262	ENSXETG00000003166	cnot3	95	88.350	Xenopus_tropicalis
ENSHCOG00000020968	cnot3a	96	62.192	ENSXCOG00000018976	cnot3b	56	77.720	Xiphophorus_couchianus
ENSHCOG00000020968	cnot3a	100	77.656	ENSXCOG00000019460	cnot3a	95	99.145	Xiphophorus_couchianus
ENSHCOG00000020968	cnot3a	100	82.785	ENSXMAG00000012273	cnot3a	100	81.051	Xiphophorus_maculatus
ENSHCOG00000020968	cnot3a	100	63.819	ENSXMAG00000014176	cnot3b	51	89.316	Xiphophorus_maculatus