EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000021099 (Gene tree)
Gene ID: 109520553
Gene Symbol: dkc1
Alias: fc87a02|fi24a05|fv62a07|wu:fa28f10|wu:fc87a02|wu:fi24a05|wu:fv62a07|zgc:110395
Full Name: dyskerin pseudouridine synthase 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 6276 bases
Position: chrKV879715.1:384547-390822
Accession: 109520553
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000000110	TruB_N	PF01509.18	1.7e-20	1	1
ENSHCOP00000000110	PUA	PF01472.20	9.2e-17	1	1
ENSHCOP00000000110	DKCLD	PF08068.12	6.8e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000014319	-	1824	XM_019877861	ENSHCOP00000000110	504 (aa)	XP_019733420	UPI00094F1093

Gene Model

Click here to download ENSHCOG00000021099's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000021099's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000021099	dkc1	86	80.499	ENSG00000130826	DKC1	99	87.317	Homo_sapiens
ENSHCOG00000021099	dkc1	84	89.858	ENSAPOG00000007799	dkc1	96	84.725	Acanthochromis_polyacanthus
ENSHCOG00000021099	dkc1	84	82.639	ENSAMEG00000002776	DKC1	78	86.582	Ailuropoda_melanoleuca
ENSHCOG00000021099	dkc1	82	89.855	ENSACIG00000022614	dkc1	94	84.468	Amphilophus_citrinellus
ENSHCOG00000021099	dkc1	84	89.858	ENSAOCG00000013159	dkc1	93	85.560	Amphiprion_ocellaris
ENSHCOG00000021099	dkc1	84	89.858	ENSAPEG00000002284	dkc1	96	84.929	Amphiprion_percula
ENSHCOG00000021099	dkc1	85	86.041	ENSATEG00000013682	dkc1	93	82.292	Anabas_testudineus
ENSHCOG00000021099	dkc1	86	82.022	ENSACAG00000015600	DKC1	80	80.901	Anolis_carolinensis
ENSHCOG00000021099	dkc1	86	80.499	ENSANAG00000022732	DKC1	77	86.835	Aotus_nancymaae
ENSHCOG00000021099	dkc1	90	85.120	ENSACLG00000015605	dkc1	92	85.120	Astatotilapia_calliptera
ENSHCOG00000021099	dkc1	85	87.007	ENSAMXG00000017108	dkc1	87	85.268	Astyanax_mexicanus
ENSHCOG00000021099	dkc1	91	77.124	ENSBTAG00000013045	DKC1	78	86.076	Bos_taurus
ENSHCOG00000021099	dkc1	81	64.216	WBGene00010478	K01G5.5	93	62.207	Caenorhabditis_elegans
ENSHCOG00000021099	dkc1	85	81.279	ENSCJAG00000004210	DKC1	85	80.365	Callithrix_jacchus
ENSHCOG00000021099	dkc1	79	85.965	ENSCAFG00000019620	-	76	86.076	Canis_familiaris
ENSHCOG00000021099	dkc1	79	76.190	ENSCAFG00000009311	-	78	76.456	Canis_familiaris
ENSHCOG00000021099	dkc1	84	71.628	ENSCAFG00020009379	-	75	75.696	Canis_lupus_dingo
ENSHCOG00000021099	dkc1	79	85.965	ENSCAFG00020008918	-	76	86.076	Canis_lupus_dingo
ENSHCOG00000021099	dkc1	91	77.342	ENSCHIG00000017392	DKC1	78	86.329	Capra_hircus
ENSHCOG00000021099	dkc1	86	79.157	ENSTSYG00000007681	DKC1	86	79.157	Carlito_syrichta
ENSHCOG00000021099	dkc1	78	81.796	ENSCAPG00000003342	DKC1	82	87.845	Cavia_aperea
ENSHCOG00000021099	dkc1	85	81.693	ENSCPOG00000008825	DKC1	85	81.693	Cavia_porcellus
ENSHCOG00000021099	dkc1	85	70.709	ENSCCAG00000027418	DKC1	84	70.481	Cebus_capucinus
ENSHCOG00000021099	dkc1	86	80.045	ENSCATG00000033602	DKC1	86	79.365	Cercocebus_atys
ENSHCOG00000021099	dkc1	84	80.734	ENSCLAG00000000720	DKC1	78	86.582	Chinchilla_lanigera
ENSHCOG00000021099	dkc1	86	80.045	ENSCSAG00000006706	DKC1	86	79.365	Chlorocebus_sabaeus
ENSHCOG00000021099	dkc1	85	82.407	ENSCPBG00000005858	DKC1	90	81.567	Chrysemys_picta_bellii
ENSHCOG00000021099	dkc1	84	75.346	ENSCING00000004599	-	83	74.371	Ciona_intestinalis
ENSHCOG00000021099	dkc1	77	80.307	ENSCSAVG00000010047	-	88	79.241	Ciona_savignyi
ENSHCOG00000021099	dkc1	86	80.045	ENSCANG00000027987	DKC1	86	79.365	Colobus_angolensis_palliatus
ENSHCOG00000021099	dkc1	75	66.667	ENSCGRG00001016789	-	79	67.209	Cricetulus_griseus_chok1gshd
ENSHCOG00000021099	dkc1	86	80.952	ENSCGRG00001014574	-	77	87.089	Cricetulus_griseus_chok1gshd
ENSHCOG00000021099	dkc1	86	80.952	ENSCGRG00000016075	-	77	87.089	Cricetulus_griseus_crigri
ENSHCOG00000021099	dkc1	75	66.667	ENSCGRG00000014809	-	77	67.209	Cricetulus_griseus_crigri
ENSHCOG00000021099	dkc1	95	84.760	ENSCSEG00000012633	dkc1	98	85.563	Cynoglossus_semilaevis
ENSHCOG00000021099	dkc1	85	89.227	ENSCVAG00000010155	dkc1	90	85.714	Cyprinodon_variegatus
ENSHCOG00000021099	dkc1	83	88.702	ENSDARG00000016484	dkc1	92	81.663	Danio_rerio
ENSHCOG00000021099	dkc1	94	77.207	ENSDNOG00000004218	DKC1	95	75.806	Dasypus_novemcinctus
ENSHCOG00000021099	dkc1	55	72.101	ENSDORG00000013566	-	91	72.101	Dipodomys_ordii
ENSHCOG00000021099	dkc1	86	69.336	FBgn0259937	Nop60B	92	67.308	Drosophila_melanogaster
ENSHCOG00000021099	dkc1	78	86.076	ENSETEG00000016095	DKC1	80	86.076	Echinops_telfairi
ENSHCOG00000021099	dkc1	66	77.477	ENSEBUG00000015962	dkc1	98	81.100	Eptatretus_burgeri
ENSHCOG00000021099	dkc1	50	63.780	ENSEBUG00000016062	dkc1	82	69.524	Eptatretus_burgeri
ENSHCOG00000021099	dkc1	93	75.356	ENSEASG00005007484	DKC1	93	74.694	Equus_asinus_asinus
ENSHCOG00000021099	dkc1	93	75.356	ENSECAG00000023524	DKC1	93	74.694	Equus_caballus
ENSHCOG00000021099	dkc1	86	80.742	ENSEEUG00000003323	DKC1	97	81.132	Erinaceus_europaeus
ENSHCOG00000021099	dkc1	85	88.785	ENSELUG00000014538	dkc1	84	88.785	Esox_lucius
ENSHCOG00000021099	dkc1	84	82.176	ENSFCAG00000006577	DKC1	78	86.582	Felis_catus
ENSHCOG00000021099	dkc1	84	83.333	ENSFALG00000011496	DKC1	92	77.131	Ficedula_albicollis
ENSHCOG00000021099	dkc1	85	81.776	ENSFDAG00000002516	DKC1	87	80.974	Fukomys_damarensis
ENSHCOG00000021099	dkc1	85	89.277	ENSFHEG00000004627	dkc1	96	85.062	Fundulus_heteroclitus
ENSHCOG00000021099	dkc1	78	88.235	ENSGMOG00000017277	dkc1	100	88.235	Gadus_morhua
ENSHCOG00000021099	dkc1	88	82.040	ENSGALG00000005054	DKC1	96	76.970	Gallus_gallus
ENSHCOG00000021099	dkc1	85	89.977	ENSGAFG00000011486	dkc1	82	86.722	Gambusia_affinis
ENSHCOG00000021099	dkc1	78	92.405	ENSGACG00000004373	dkc1	96	92.705	Gasterosteus_aculeatus
ENSHCOG00000021099	dkc1	85	83.102	ENSGAGG00000011330	DKC1	84	84.296	Gopherus_agassizii
ENSHCOG00000021099	dkc1	86	80.499	ENSGGOG00000001045	DKC1	86	79.819	Gorilla_gorilla
ENSHCOG00000021099	dkc1	95	85.391	ENSHBUG00000012436	dkc1	97	85.391	Haplochromis_burtoni
ENSHCOG00000021099	dkc1	82	82.118	ENSHGLG00000000649	DKC1	90	78.065	Heterocephalus_glaber_female
ENSHCOG00000021099	dkc1	82	82.118	ENSHGLG00100001153	DKC1	91	78.065	Heterocephalus_glaber_male
ENSHCOG00000021099	dkc1	85	85.484	ENSIPUG00000010309	dkc1	90	81.370	Ictalurus_punctatus
ENSHCOG00000021099	dkc1	86	73.843	ENSSTOG00000020149	-	85	73.318	Ictidomys_tridecemlineatus
ENSHCOG00000021099	dkc1	86	79.864	ENSSTOG00000001074	-	91	79.864	Ictidomys_tridecemlineatus
ENSHCOG00000021099	dkc1	86	69.820	ENSSTOG00000011904	-	82	69.300	Ictidomys_tridecemlineatus
ENSHCOG00000021099	dkc1	55	72.464	ENSJJAG00000010086	-	91	72.464	Jaculus_jaculus
ENSHCOG00000021099	dkc1	85	86.916	ENSKMAG00000008010	dkc1	94	82.479	Kryptolebias_marmoratus
ENSHCOG00000021099	dkc1	85	90.187	ENSLBEG00000019122	dkc1	97	86.345	Labrus_bergylta
ENSHCOG00000021099	dkc1	95	76.278	ENSLACG00000014025	DKC1	90	87.089	Latimeria_chalumnae
ENSHCOG00000021099	dkc1	89	85.403	ENSLOCG00000013713	dkc1	96	83.766	Lepisosteus_oculatus
ENSHCOG00000021099	dkc1	86	80.543	ENSLAFG00000000221	DKC1	77	86.582	Loxodonta_africana
ENSHCOG00000021099	dkc1	86	80.045	ENSMFAG00000032398	DKC1	74	79.365	Macaca_fascicularis
ENSHCOG00000021099	dkc1	86	80.045	ENSMMUG00000005768	DKC1	86	79.365	Macaca_mulatta
ENSHCOG00000021099	dkc1	86	80.045	ENSMNEG00000034503	DKC1	86	79.365	Macaca_nemestrina
ENSHCOG00000021099	dkc1	86	80.045	ENSMLEG00000034422	DKC1	86	79.365	Mandrillus_leucophaeus
ENSHCOG00000021099	dkc1	81	92.383	ENSMAMG00000005427	dkc1	88	94.684	Mastacembelus_armatus
ENSHCOG00000021099	dkc1	95	85.597	ENSMZEG00005014503	dkc1	97	85.597	Maylandia_zebra
ENSHCOG00000021099	dkc1	76	85.897	ENSMGAG00000009238	DKC1	95	79.091	Meleagris_gallopavo
ENSHCOG00000021099	dkc1	55	72.101	ENSMAUG00000016454	-	91	72.101	Mesocricetus_auratus
ENSHCOG00000021099	dkc1	85	80.876	ENSMICG00000038751	-	79	86.076	Microcebus_murinus
ENSHCOG00000021099	dkc1	79	72.927	ENSMICG00000002818	-	99	76.099	Microcebus_murinus
ENSHCOG00000021099	dkc1	55	69.928	ENSMOCG00000001169	-	91	69.928	Microtus_ochrogaster
ENSHCOG00000021099	dkc1	78	91.899	ENSMMOG00000020348	dkc1	86	91.899	Mola_mola
ENSHCOG00000021099	dkc1	82	83.535	ENSMODG00000009243	DKC1	72	83.535	Monodelphis_domestica
ENSHCOG00000021099	dkc1	84	89.362	ENSMALG00000009454	dkc1	91	83.547	Monopterus_albus
ENSHCOG00000021099	dkc1	85	71.236	MGP_CAROLIEiJ_G0033191	Dkc1	85	85.600	Mus_caroli
ENSHCOG00000021099	dkc1	86	80.272	ENSMUSG00000031403	Dkc1	78	86.329	Mus_musculus
ENSHCOG00000021099	dkc1	86	80.045	MGP_PahariEiJ_G0031735	Dkc1	89	79.212	Mus_pahari
ENSHCOG00000021099	dkc1	86	80.272	MGP_SPRETEiJ_G0034351	Dkc1	77	86.329	Mus_spretus
ENSHCOG00000021099	dkc1	79	86.216	ENSMPUG00000016136	DKC1	73	86.329	Mustela_putorius_furo
ENSHCOG00000021099	dkc1	85	76.298	ENSMLUG00000011918	DKC1	85	76.298	Myotis_lucifugus
ENSHCOG00000021099	dkc1	55	72.464	ENSNGAG00000015724	-	91	72.464	Nannospalax_galili
ENSHCOG00000021099	dkc1	78	93.418	ENSNBRG00000005638	dkc1	80	93.418	Neolamprologus_brichardi
ENSHCOG00000021099	dkc1	86	80.272	ENSNLEG00000014323	DKC1	86	79.592	Nomascus_leucogenys
ENSHCOG00000021099	dkc1	79	82.707	ENSMEUG00000001066	DKC1	86	82.785	Notamacropus_eugenii
ENSHCOG00000021099	dkc1	69	79.251	ENSOPRG00000005248	DKC1	69	79.251	Ochotona_princeps
ENSHCOG00000021099	dkc1	55	72.101	ENSODEG00000000549	-	91	72.101	Octodon_degus
ENSHCOG00000021099	dkc1	79	87.218	ENSODEG00000011816	-	85	82.609	Octodon_degus
ENSHCOG00000021099	dkc1	85	90.421	ENSONIG00000013889	dkc1	96	86.242	Oreochromis_niloticus
ENSHCOG00000021099	dkc1	57	60.984	ENSOANG00000022295	-	70	69.721	Ornithorhynchus_anatinus
ENSHCOG00000021099	dkc1	84	82.407	ENSOANG00000008713	-	89	82.367	Ornithorhynchus_anatinus
ENSHCOG00000021099	dkc1	86	80.045	ENSOCUG00000012646	DKC1	86	79.592	Oryctolagus_cuniculus
ENSHCOG00000021099	dkc1	84	85.849	ENSORLG00000018748	dkc1	91	82.468	Oryzias_latipes
ENSHCOG00000021099	dkc1	84	87.765	ENSOMEG00000005786	dkc1	82	89.076	Oryzias_melastigma
ENSHCOG00000021099	dkc1	91	77.322	ENSOGAG00000003399	DKC1	76	86.582	Otolemur_garnettii
ENSHCOG00000021099	dkc1	91	77.778	ENSOARG00000003047	DKC1	78	86.582	Ovis_aries
ENSHCOG00000021099	dkc1	86	80.499	ENSPPAG00000023820	DKC1	86	79.819	Pan_paniscus
ENSHCOG00000021099	dkc1	84	82.176	ENSPPRG00000009104	DKC1	78	86.582	Panthera_pardus
ENSHCOG00000021099	dkc1	79	86.650	ENSPTIG00000017469	DKC1	80	86.582	Panthera_tigris_altaica
ENSHCOG00000021099	dkc1	86	80.499	ENSPTRG00000022449	DKC1	86	79.819	Pan_troglodytes
ENSHCOG00000021099	dkc1	86	80.499	ENSPTRG00000043416	-	75	79.819	Pan_troglodytes
ENSHCOG00000021099	dkc1	86	80.045	ENSPANG00000011978	DKC1	86	79.365	Papio_anubis
ENSHCOG00000021099	dkc1	84	86.321	ENSPKIG00000008443	dkc1	90	86.085	Paramormyrops_kingsleyae
ENSHCOG00000021099	dkc1	71	89.665	ENSPSIG00000013765	DKC1	86	89.665	Pelodiscus_sinensis
ENSHCOG00000021099	dkc1	91	76.730	ENSPMGG00000004097	dkc1	72	87.595	Periophthalmus_magnuspinnatus
ENSHCOG00000021099	dkc1	69	86.550	ENSPEMG00000013348	Dkc1	83	86.550	Peromyscus_maniculatus_bairdii
ENSHCOG00000021099	dkc1	83	83.571	ENSPCIG00000016706	DKC1	72	82.751	Phascolarctos_cinereus
ENSHCOG00000021099	dkc1	88	88.839	ENSPFOG00000018653	dkc1	96	86.515	Poecilia_formosa
ENSHCOG00000021099	dkc1	88	88.839	ENSPLAG00000003272	dkc1	86	86.515	Poecilia_latipinna
ENSHCOG00000021099	dkc1	88	88.616	ENSPMEG00000010413	dkc1	96	86.307	Poecilia_mexicana
ENSHCOG00000021099	dkc1	88	88.616	ENSPREG00000004100	dkc1	90	86.393	Poecilia_reticulata
ENSHCOG00000021099	dkc1	86	80.499	ENSPPYG00000020892	DKC1	87	79.819	Pongo_abelii
ENSHCOG00000021099	dkc1	72	87.397	ENSPCAG00000015034	DKC1	71	87.569	Procavia_capensis
ENSHCOG00000021099	dkc1	85	80.726	ENSPCOG00000026874	DKC1	86	80.317	Propithecus_coquereli
ENSHCOG00000021099	dkc1	85	81.542	ENSPVAG00000009222	DKC1	85	81.542	Pteropus_vampyrus
ENSHCOG00000021099	dkc1	85	86.301	ENSPNYG00000020063	dkc1	93	84.335	Pundamilia_nyererei
ENSHCOG00000021099	dkc1	85	87.471	ENSPNAG00000005780	dkc1	85	86.449	Pygocentrus_nattereri
ENSHCOG00000021099	dkc1	85	77.854	ENSRNOG00000055562	Dkc1	86	76.941	Rattus_norvegicus
ENSHCOG00000021099	dkc1	86	80.045	ENSRBIG00000028457	DKC1	74	79.365	Rhinopithecus_bieti
ENSHCOG00000021099	dkc1	86	80.045	ENSRROG00000044780	DKC1	86	79.365	Rhinopithecus_roxellana
ENSHCOG00000021099	dkc1	76	70.757	YLR175W	-	79	70.757	Saccharomyces_cerevisiae
ENSHCOG00000021099	dkc1	86	80.272	ENSSBOG00000033746	DKC1	86	79.819	Saimiri_boliviensis_boliviensis
ENSHCOG00000021099	dkc1	85	82.299	ENSSHAG00000002463	DKC1	93	81.549	Sarcophilus_harrisii
ENSHCOG00000021099	dkc1	85	86.775	ENSSFOG00015009585	dkc1	85	87.007	Scleropages_formosus
ENSHCOG00000021099	dkc1	89	86.093	ENSSMAG00000002552	dkc1	94	82.305	Scophthalmus_maximus
ENSHCOG00000021099	dkc1	85	89.906	ENSSDUG00000009963	dkc1	96	84.330	Seriola_dumerili
ENSHCOG00000021099	dkc1	81	90.488	ENSSLDG00000019342	dkc1	93	84.335	Seriola_lalandi_dorsalis
ENSHCOG00000021099	dkc1	79	81.955	ENSSARG00000001822	DKC1	79	82.278	Sorex_araneus
ENSHCOG00000021099	dkc1	90	79.130	ENSSPUG00000018907	DKC1	96	75.345	Sphenodon_punctatus
ENSHCOG00000021099	dkc1	84	88.889	ENSSPAG00000002585	dkc1	91	84.232	Stegastes_partitus
ENSHCOG00000021099	dkc1	79	86.869	ENSSSCG00000012823	DKC1	82	86.835	Sus_scrofa
ENSHCOG00000021099	dkc1	77	86.005	ENSTGUG00000006781	DKC1	88	83.251	Taeniopygia_guttata
ENSHCOG00000021099	dkc1	88	88.209	ENSTRUG00000004413	dkc1	97	83.884	Takifugu_rubripes
ENSHCOG00000021099	dkc1	88	70.175	ENSTNIG00000002582	dkc1	96	66.064	Tetraodon_nigroviridis
ENSHCOG00000021099	dkc1	62	77.316	ENSTBEG00000011262	DKC1	85	77.346	Tupaia_belangeri
ENSHCOG00000021099	dkc1	55	86.643	ENSTTRG00000008089	DKC1	55	86.643	Tursiops_truncatus
ENSHCOG00000021099	dkc1	88	79.866	ENSUAMG00000022721	DKC1	83	86.329	Ursus_americanus
ENSHCOG00000021099	dkc1	79	85.859	ENSUMAG00000016899	DKC1	99	82.801	Ursus_maritimus
ENSHCOG00000021099	dkc1	79	84.483	ENSVVUG00000020734	-	69	84.577	Vulpes_vulpes
ENSHCOG00000021099	dkc1	79	71.178	ENSVVUG00000021671	-	73	71.139	Vulpes_vulpes
ENSHCOG00000021099	dkc1	94	81.551	ENSXETG00000032517	DKC1	95	80.538	Xenopus_tropicalis
ENSHCOG00000021099	dkc1	86	88.657	ENSXCOG00000005498	dkc1	99	86.207	Xiphophorus_couchianus
ENSHCOG00000021099	dkc1	88	89.286	ENSXMAG00000004919	dkc1	96	86.335	Xiphophorus_maculatus