EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000021127 (Gene tree)
Gene ID: 109520910
Gene Symbol: srp54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 6201 bases
Position: chrKV879715.1:479971-486171
Accession: 109520910
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000000096	SRP54	PF00448.22	4.5e-77	1	1
ENSHCOP00000000092	SRP54	PF00448.22	2.8e-73	1	1
ENSHCOP00000000092	SRP54_N	PF02881.19	7.7e-20	1	1
ENSHCOP00000000096	SRP54_N	PF02881.19	7.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000014358	-	2681	XM_019878508	ENSHCOP00000000096	504 (aa)	XP_019734067	UPI00094E41BB
ENSHCOT00000014361	-	1506	-	ENSHCOP00000000092	501 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000021127's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000021127's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000021127	srp54	100	94.048	ENSG00000100883	SRP54	100	94.091	Homo_sapiens
ENSHCOG00000021127	srp54	100	97.817	ENSAPOG00000011314	srp54	100	97.817	Acanthochromis_polyacanthus
ENSHCOG00000021127	srp54	100	94.048	ENSAMEG00000015544	SRP54	100	94.048	Ailuropoda_melanoleuca
ENSHCOG00000021127	srp54	89	96.437	ENSACIG00000022831	srp54	97	96.437	Amphilophus_citrinellus
ENSHCOG00000021127	srp54	100	97.817	ENSAOCG00000019401	srp54	100	97.817	Amphiprion_ocellaris
ENSHCOG00000021127	srp54	100	97.817	ENSAPEG00000001977	srp54	100	98.101	Amphiprion_percula
ENSHCOG00000021127	srp54	100	97.222	ENSATEG00000013877	srp54	100	97.222	Anabas_testudineus
ENSHCOG00000021127	srp54	94	93.460	ENSAPLG00000010125	SRP54	95	93.460	Anas_platyrhynchos
ENSHCOG00000021127	srp54	65	78.248	ENSACAG00000001124	-	100	78.248	Anolis_carolinensis
ENSHCOG00000021127	srp54	100	93.452	ENSACAG00000002103	-	100	93.452	Anolis_carolinensis
ENSHCOG00000021127	srp54	86	90.783	ENSACAG00000010631	-	100	90.783	Anolis_carolinensis
ENSHCOG00000021127	srp54	100	94.048	ENSANAG00000022133	SRP54	100	94.048	Aotus_nancymaae
ENSHCOG00000021127	srp54	100	97.421	ENSACLG00000015866	srp54	100	97.421	Astatotilapia_calliptera
ENSHCOG00000021127	srp54	100	96.230	ENSAMXG00000032669	SRP54	100	96.230	Astyanax_mexicanus
ENSHCOG00000021127	srp54	100	94.048	ENSBTAG00000019085	SRP54	100	94.048	Bos_taurus
ENSHCOG00000021127	srp54	98	72.088	WBGene00009012	F21D5.7	100	72.088	Caenorhabditis_elegans
ENSHCOG00000021127	srp54	100	94.048	ENSCJAG00000006581	SRP54	100	94.048	Callithrix_jacchus
ENSHCOG00000021127	srp54	100	94.048	ENSCAFG00000013331	SRP54	100	94.048	Canis_familiaris
ENSHCOG00000021127	srp54	100	94.048	ENSCAFG00020023427	SRP54	100	94.048	Canis_lupus_dingo
ENSHCOG00000021127	srp54	100	94.048	ENSCHIG00000026345	SRP54	100	94.048	Capra_hircus
ENSHCOG00000021127	srp54	100	93.849	ENSTSYG00000002680	-	100	93.849	Carlito_syrichta
ENSHCOG00000021127	srp54	94	82.737	ENSTSYG00000035333	-	93	82.737	Carlito_syrichta
ENSHCOG00000021127	srp54	94	60.816	ENSCAPG00000008780	SRP54	100	60.816	Cavia_aperea
ENSHCOG00000021127	srp54	100	93.651	ENSCPOG00000003691	SRP54	100	93.651	Cavia_porcellus
ENSHCOG00000021127	srp54	90	93.810	ENSCCAG00000024179	SRP54	100	94.033	Cebus_capucinus
ENSHCOG00000021127	srp54	100	94.048	ENSCATG00000034083	SRP54	100	94.048	Cercocebus_atys
ENSHCOG00000021127	srp54	100	94.048	ENSCLAG00000015076	SRP54	100	94.048	Chinchilla_lanigera
ENSHCOG00000021127	srp54	100	94.048	ENSCSAG00000015575	SRP54	100	94.048	Chlorocebus_sabaeus
ENSHCOG00000021127	srp54	95	83.368	ENSCHOG00000008986	SRP54	100	83.368	Choloepus_hoffmanni
ENSHCOG00000021127	srp54	100	94.048	ENSCPBG00000026195	SRP54	100	94.048	Chrysemys_picta_bellii
ENSHCOG00000021127	srp54	100	81.548	ENSCING00000007380	-	100	81.548	Ciona_intestinalis
ENSHCOG00000021127	srp54	100	94.048	ENSCANG00000028532	SRP54	100	94.048	Colobus_angolensis_palliatus
ENSHCOG00000021127	srp54	100	94.444	ENSCGRG00001009525	-	100	94.444	Cricetulus_griseus_chok1gshd
ENSHCOG00000021127	srp54	76	95.065	ENSCGRG00000009453	-	89	95.065	Cricetulus_griseus_crigri
ENSHCOG00000021127	srp54	100	96.825	ENSCSEG00000012392	srp54	100	96.825	Cynoglossus_semilaevis
ENSHCOG00000021127	srp54	100	97.421	ENSCVAG00000010395	srp54	100	97.421	Cyprinodon_variegatus
ENSHCOG00000021127	srp54	100	96.627	ENSDARG00000098367	srp54	100	96.627	Danio_rerio
ENSHCOG00000021127	srp54	100	94.048	ENSDNOG00000032525	SRP54	100	94.048	Dasypus_novemcinctus
ENSHCOG00000021127	srp54	89	79.425	ENSDORG00000005159	-	98	79.425	Dipodomys_ordii
ENSHCOG00000021127	srp54	96	79.588	FBgn0010747	Srp54k	98	79.116	Drosophila_melanogaster
ENSHCOG00000021127	srp54	100	93.452	ENSETEG00000016307	-	100	93.452	Echinops_telfairi
ENSHCOG00000021127	srp54	83	55.048	ENSETEG00000012102	-	99	55.048	Echinops_telfairi
ENSHCOG00000021127	srp54	100	87.302	ENSEBUG00000009437	-	100	87.302	Eptatretus_burgeri
ENSHCOG00000021127	srp54	100	94.048	ENSEASG00005002057	SRP54	100	94.048	Equus_asinus_asinus
ENSHCOG00000021127	srp54	99	93.775	ENSECAG00000018042	SRP54	98	93.775	Equus_caballus
ENSHCOG00000021127	srp54	100	78.571	ENSEEUG00000001511	SRP54	100	78.571	Erinaceus_europaeus
ENSHCOG00000021127	srp54	100	95.833	ENSELUG00000003395	srp54	100	95.833	Esox_lucius
ENSHCOG00000021127	srp54	100	94.246	ENSFCAG00000032033	SRP54	100	94.246	Felis_catus
ENSHCOG00000021127	srp54	100	93.651	ENSFALG00000005995	SRP54	100	93.651	Ficedula_albicollis
ENSHCOG00000021127	srp54	100	94.048	ENSFDAG00000016767	SRP54	100	94.048	Fukomys_damarensis
ENSHCOG00000021127	srp54	100	97.817	ENSFHEG00000004263	srp54	100	97.817	Fundulus_heteroclitus
ENSHCOG00000021127	srp54	95	91.004	ENSGMOG00000011391	srp54	100	91.004	Gadus_morhua
ENSHCOG00000021127	srp54	100	93.651	ENSGALG00000023135	SRP54	100	93.651	Gallus_gallus
ENSHCOG00000021127	srp54	100	97.619	ENSGAFG00000011586	srp54	100	97.619	Gambusia_affinis
ENSHCOG00000021127	srp54	100	97.817	ENSGACG00000004181	srp54	100	97.817	Gasterosteus_aculeatus
ENSHCOG00000021127	srp54	100	94.048	ENSGAGG00000014766	SRP54	100	94.048	Gopherus_agassizii
ENSHCOG00000021127	srp54	100	94.048	ENSGGOG00000002926	SRP54	100	94.048	Gorilla_gorilla
ENSHCOG00000021127	srp54	100	97.421	ENSHBUG00000005678	srp54	100	97.421	Haplochromis_burtoni
ENSHCOG00000021127	srp54	100	94.048	ENSHGLG00000002850	SRP54	100	94.048	Heterocephalus_glaber_female
ENSHCOG00000021127	srp54	100	65.545	ENSHGLG00100007281	-	100	65.545	Heterocephalus_glaber_male
ENSHCOG00000021127	srp54	100	94.048	ENSHGLG00100005263	SRP54	100	94.048	Heterocephalus_glaber_male
ENSHCOG00000021127	srp54	100	96.230	ENSIPUG00000001420	srp54	100	96.230	Ictalurus_punctatus
ENSHCOG00000021127	srp54	100	94.048	ENSSTOG00000016023	SRP54	100	94.048	Ictidomys_tridecemlineatus
ENSHCOG00000021127	srp54	87	73.636	ENSJJAG00000016404	-	100	73.636	Jaculus_jaculus
ENSHCOG00000021127	srp54	100	89.683	ENSJJAG00000013417	-	100	89.683	Jaculus_jaculus
ENSHCOG00000021127	srp54	100	97.024	ENSKMAG00000007707	srp54	100	97.024	Kryptolebias_marmoratus
ENSHCOG00000021127	srp54	100	97.619	ENSLBEG00000018690	srp54	100	97.619	Labrus_bergylta
ENSHCOG00000021127	srp54	100	97.619	ENSLBEG00000021122	srp54	100	97.619	Labrus_bergylta
ENSHCOG00000021127	srp54	100	94.444	ENSLACG00000017890	SRP54	100	94.444	Latimeria_chalumnae
ENSHCOG00000021127	srp54	100	96.230	ENSLOCG00000009440	srp54	100	96.230	Lepisosteus_oculatus
ENSHCOG00000021127	srp54	100	94.048	ENSLAFG00000012007	SRP54	100	94.048	Loxodonta_africana
ENSHCOG00000021127	srp54	100	94.048	ENSMFAG00000044371	SRP54	100	94.048	Macaca_fascicularis
ENSHCOG00000021127	srp54	100	94.048	ENSMMUG00000015073	FAM177A1	100	94.048	Macaca_mulatta
ENSHCOG00000021127	srp54	100	94.048	ENSMNEG00000006947	SRP54	100	94.048	Macaca_nemestrina
ENSHCOG00000021127	srp54	100	94.048	ENSMLEG00000042251	SRP54	100	94.048	Mandrillus_leucophaeus
ENSHCOG00000021127	srp54	100	97.421	ENSMAMG00000004803	srp54	100	97.421	Mastacembelus_armatus
ENSHCOG00000021127	srp54	100	97.421	ENSMZEG00005027528	srp54	100	97.421	Maylandia_zebra
ENSHCOG00000021127	srp54	100	89.328	ENSMGAG00000012481	SRP54	100	89.328	Meleagris_gallopavo
ENSHCOG00000021127	srp54	100	94.246	ENSMAUG00000014447	-	100	94.246	Mesocricetus_auratus
ENSHCOG00000021127	srp54	100	94.048	ENSMICG00000010270	SRP54	100	94.048	Microcebus_murinus
ENSHCOG00000021127	srp54	87	94.318	ENSMOCG00000000948	-	100	94.318	Microtus_ochrogaster
ENSHCOG00000021127	srp54	90	94.934	ENSMMOG00000020303	srp54	99	94.934	Mola_mola
ENSHCOG00000021127	srp54	100	94.048	ENSMODG00000012925	-	100	94.048	Monodelphis_domestica
ENSHCOG00000021127	srp54	100	94.048	ENSMODG00000023150	-	100	94.048	Monodelphis_domestica
ENSHCOG00000021127	srp54	89	95.982	ENSMALG00000009163	srp54	99	95.982	Monopterus_albus
ENSHCOG00000021127	srp54	100	94.246	MGP_CAROLIEiJ_G0017754	-	100	94.246	Mus_caroli
ENSHCOG00000021127	srp54	100	94.246	ENSMUSG00000073079	Srp54a	100	94.246	Mus_musculus
ENSHCOG00000021127	srp54	100	93.452	ENSMUSG00000079108	Srp54c	100	93.452	Mus_musculus
ENSHCOG00000021127	srp54	100	94.246	ENSMUSG00000112449	Srp54b	100	94.246	Mus_musculus
ENSHCOG00000021127	srp54	100	94.246	MGP_PahariEiJ_G0029510	-	100	94.246	Mus_pahari
ENSHCOG00000021127	srp54	100	94.048	ENSMPUG00000016302	SRP54	100	94.048	Mustela_putorius_furo
ENSHCOG00000021127	srp54	100	93.452	ENSMLUG00000008958	SRP54	100	93.452	Myotis_lucifugus
ENSHCOG00000021127	srp54	100	85.119	ENSNGAG00000019806	-	100	85.119	Nannospalax_galili
ENSHCOG00000021127	srp54	87	97.727	ENSNBRG00000006000	srp54	100	97.727	Neolamprologus_brichardi
ENSHCOG00000021127	srp54	100	94.048	ENSNLEG00000003496	SRP54	100	94.048	Nomascus_leucogenys
ENSHCOG00000021127	srp54	67	94.643	ENSMEUG00000000138	-	76	94.643	Notamacropus_eugenii
ENSHCOG00000021127	srp54	58	95.082	ENSOPRG00000014502	-	60	95.082	Ochotona_princeps
ENSHCOG00000021127	srp54	100	94.048	ENSODEG00000004865	SRP54	100	94.048	Octodon_degus
ENSHCOG00000021127	srp54	100	97.421	ENSONIG00000011768	srp54	100	97.421	Oreochromis_niloticus
ENSHCOG00000021127	srp54	100	94.048	ENSOANG00000014051	SRP54	100	94.048	Ornithorhynchus_anatinus
ENSHCOG00000021127	srp54	100	93.452	ENSOCUG00000007838	SRP54	100	93.452	Oryctolagus_cuniculus
ENSHCOG00000021127	srp54	100	97.619	ENSORLG00000010027	srp54	100	97.619	Oryzias_latipes
ENSHCOG00000021127	srp54	100	97.619	ENSORLG00020001878	srp54	100	97.619	Oryzias_latipes_hni
ENSHCOG00000021127	srp54	100	97.619	ENSORLG00015021866	srp54	100	97.619	Oryzias_latipes_hsok
ENSHCOG00000021127	srp54	100	97.817	ENSOMEG00000020952	srp54	100	97.817	Oryzias_melastigma
ENSHCOG00000021127	srp54	100	94.048	ENSOGAG00000012188	SRP54	100	94.048	Otolemur_garnettii
ENSHCOG00000021127	srp54	100	94.048	ENSOARG00000007160	SRP54	100	94.048	Ovis_aries
ENSHCOG00000021127	srp54	100	94.048	ENSPPAG00000017434	SRP54	100	94.048	Pan_paniscus
ENSHCOG00000021127	srp54	100	93.452	ENSPPRG00000014047	SRP54	100	93.452	Panthera_pardus
ENSHCOG00000021127	srp54	100	94.246	ENSPTIG00000000744	SRP54	96	94.246	Panthera_tigris_altaica
ENSHCOG00000021127	srp54	100	94.048	ENSPTRG00000006259	FAM177A1	100	94.048	Pan_troglodytes
ENSHCOG00000021127	srp54	100	94.048	ENSPANG00000023853	SRP54	100	94.048	Papio_anubis
ENSHCOG00000021127	srp54	100	96.032	ENSPKIG00000001953	srp54	100	96.032	Paramormyrops_kingsleyae
ENSHCOG00000021127	srp54	100	93.849	ENSPSIG00000006476	SRP54	100	93.849	Pelodiscus_sinensis
ENSHCOG00000021127	srp54	91	94.130	ENSPMGG00000004127	srp54	99	94.130	Periophthalmus_magnuspinnatus
ENSHCOG00000021127	srp54	100	82.143	ENSPEMG00000019634	-	100	82.143	Peromyscus_maniculatus_bairdii
ENSHCOG00000021127	srp54	100	89.683	ENSPMAG00000006078	-	100	89.683	Petromyzon_marinus
ENSHCOG00000021127	srp54	100	94.048	ENSPCIG00000016175	SRP54	100	94.048	Phascolarctos_cinereus
ENSHCOG00000021127	srp54	100	97.619	ENSPFOG00000008870	srp54	100	97.619	Poecilia_formosa
ENSHCOG00000021127	srp54	100	97.619	ENSPLAG00000009889	srp54	100	97.619	Poecilia_latipinna
ENSHCOG00000021127	srp54	100	97.619	ENSPMEG00000008601	srp54	100	97.619	Poecilia_mexicana
ENSHCOG00000021127	srp54	100	97.619	ENSPREG00000004505	srp54	100	97.619	Poecilia_reticulata
ENSHCOG00000021127	srp54	100	89.286	ENSPPYG00000005739	SRP54	100	89.286	Pongo_abelii
ENSHCOG00000021127	srp54	100	90.675	ENSPCAG00000006268	SRP54	100	90.675	Procavia_capensis
ENSHCOG00000021127	srp54	100	92.277	ENSPCOG00000022473	SRP54	100	92.277	Propithecus_coquereli
ENSHCOG00000021127	srp54	63	94.681	ENSPVAG00000010056	SRP54	82	94.681	Pteropus_vampyrus
ENSHCOG00000021127	srp54	100	97.421	ENSPNYG00000009717	srp54	100	97.421	Pundamilia_nyererei
ENSHCOG00000021127	srp54	100	96.032	ENSPNAG00000008544	srp54	100	96.032	Pygocentrus_nattereri
ENSHCOG00000021127	srp54	100	94.048	ENSRNOG00000032776	Srp54a	100	94.048	Rattus_norvegicus
ENSHCOG00000021127	srp54	100	94.048	ENSRROG00000041292	SRP54	100	94.048	Rhinopithecus_roxellana
ENSHCOG00000021127	srp54	95	46.707	YPR088C	SRP54	95	46.360	Saccharomyces_cerevisiae
ENSHCOG00000021127	srp54	94	94.093	ENSSBOG00000035145	SRP54	100	94.093	Saimiri_boliviensis_boliviensis
ENSHCOG00000021127	srp54	68	93.294	ENSSHAG00000000671	SRP54	100	93.294	Sarcophilus_harrisii
ENSHCOG00000021127	srp54	100	96.429	ENSSFOG00015013920	srp54	100	96.429	Scleropages_formosus
ENSHCOG00000021127	srp54	100	91.760	ENSSMAG00000002441	srp54	100	91.760	Scophthalmus_maximus
ENSHCOG00000021127	srp54	100	97.619	ENSSDUG00000018586	srp54	100	97.619	Seriola_dumerili
ENSHCOG00000021127	srp54	100	97.817	ENSSLDG00000010476	srp54	100	97.817	Seriola_lalandi_dorsalis
ENSHCOG00000021127	srp54	100	94.048	ENSSARG00000002744	SRP54	100	94.048	Sorex_araneus
ENSHCOG00000021127	srp54	100	94.048	ENSSPUG00000013101	SRP54	100	94.048	Sphenodon_punctatus
ENSHCOG00000021127	srp54	100	97.817	ENSSPAG00000002354	srp54	100	97.817	Stegastes_partitus
ENSHCOG00000021127	srp54	100	94.048	ENSSSCG00000001955	SRP54	100	94.048	Sus_scrofa
ENSHCOG00000021127	srp54	94	93.460	ENSTGUG00000011945	-	95	93.460	Taeniopygia_guttata
ENSHCOG00000021127	srp54	100	97.421	ENSTRUG00000007057	srp54	100	97.421	Takifugu_rubripes
ENSHCOG00000021127	srp54	100	97.619	ENSTNIG00000002589	srp54	100	97.619	Tetraodon_nigroviridis
ENSHCOG00000021127	srp54	89	85.459	ENSTBEG00000011409	SRP54	100	85.459	Tupaia_belangeri
ENSHCOG00000021127	srp54	100	85.119	ENSTTRG00000000928	SRP54	100	85.119	Tursiops_truncatus
ENSHCOG00000021127	srp54	52	94.656	ENSUAMG00000012385	SRP54	100	94.656	Ursus_americanus
ENSHCOG00000021127	srp54	100	94.048	ENSUMAG00000011234	SRP54	100	94.048	Ursus_maritimus
ENSHCOG00000021127	srp54	94	93.671	ENSVPAG00000005668	SRP54	100	93.671	Vicugna_pacos
ENSHCOG00000021127	srp54	100	94.048	ENSVVUG00000019962	SRP54	100	94.048	Vulpes_vulpes
ENSHCOG00000021127	srp54	100	79.882	ENSXETG00000012290	srp54	100	79.882	Xenopus_tropicalis
ENSHCOG00000021127	srp54	88	97.517	ENSXCOG00000004658	srp54	96	97.517	Xiphophorus_couchianus
ENSHCOG00000021127	srp54	100	97.619	ENSXMAG00000018315	srp54	100	97.619	Xiphophorus_maculatus