EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000021214 (Gene tree)
Gene ID: 109521881
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 9564 bases
Position: chrKV880128.1:2571393-2580956
Accession: 109521881
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000017167	RRM_1	PF00076.22	7.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000014474	-	2802	XM_019879961	ENSHCOP00000017167	401 (aa)	XP_019735520	UPI00094F07D7

Gene Model

Click here to download ENSHCOG00000021214's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000021214's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000021214	rbm42	100	77.941	ENSAPOG00000015109	rbm42	100	79.657	Acanthochromis_polyacanthus
ENSHCOG00000021214	rbm42	100	72.794	ENSACIG00000010771	rbm42	100	73.039	Amphilophus_citrinellus
ENSHCOG00000021214	rbm42	100	80.392	ENSAOCG00000008873	rbm42	100	78.922	Amphiprion_ocellaris
ENSHCOG00000021214	rbm42	100	80.392	ENSAPEG00000012051	rbm42	99	78.922	Amphiprion_percula
ENSHCOG00000021214	rbm42	100	75.245	ENSATEG00000000536	rbm42	100	75.795	Anabas_testudineus
ENSHCOG00000021214	rbm42	100	80.392	ENSACLG00000004988	rbm42	100	81.773	Astatotilapia_calliptera
ENSHCOG00000021214	rbm42	100	70.913	ENSAMXG00000016545	rbm42	100	70.983	Astyanax_mexicanus
ENSHCOG00000021214	rbm42	97	77.945	ENSCSEG00000010248	rbm42	100	76.441	Cynoglossus_semilaevis
ENSHCOG00000021214	rbm42	100	75.728	ENSCVAG00000015589	rbm42	100	74.757	Cyprinodon_variegatus
ENSHCOG00000021214	rbm42	100	66.194	ENSDARG00000039910	rbm42	100	69.249	Danio_rerio
ENSHCOG00000021214	rbm42	100	65.493	ENSELUG00000022403	rbm42	100	66.979	Esox_lucius
ENSHCOG00000021214	rbm42	65	74.349	ENSFHEG00000006764	rbm42	89	76.119	Fundulus_heteroclitus
ENSHCOG00000021214	rbm42	100	67.640	ENSGMOG00000012660	rbm42	100	67.561	Gadus_morhua
ENSHCOG00000021214	rbm42	76	77.419	ENSGAFG00000009059	rbm42	100	77.419	Gambusia_affinis
ENSHCOG00000021214	rbm42	100	78.240	ENSGACG00000004170	rbm42	100	77.206	Gasterosteus_aculeatus
ENSHCOG00000021214	rbm42	100	80.392	ENSHBUG00000011141	rbm42	100	81.773	Haplochromis_burtoni
ENSHCOG00000021214	rbm42	100	68.957	ENSIPUG00000022365	rbm42	99	69.524	Ictalurus_punctatus
ENSHCOG00000021214	rbm42	91	74.194	ENSKMAG00000015287	rbm42	99	73.458	Kryptolebias_marmoratus
ENSHCOG00000021214	rbm42	100	73.671	ENSLBEG00000017547	rbm42	100	77.751	Labrus_bergylta
ENSHCOG00000021214	rbm42	84	73.219	ENSLBEG00000004578	-	96	76.504	Labrus_bergylta
ENSHCOG00000021214	rbm42	100	65.647	ENSLOCG00000003368	rbm42	100	65.882	Lepisosteus_oculatus
ENSHCOG00000021214	rbm42	100	79.361	ENSMAMG00000006708	rbm42	100	78.133	Mastacembelus_armatus
ENSHCOG00000021214	rbm42	100	80.392	ENSMZEG00005025234	rbm42	100	81.773	Maylandia_zebra
ENSHCOG00000021214	rbm42	91	77.898	ENSMALG00000015720	rbm42	100	76.280	Monopterus_albus
ENSHCOG00000021214	rbm42	100	79.562	ENSONIG00000008029	rbm42	100	78.589	Oreochromis_niloticus
ENSHCOG00000021214	rbm42	100	60.192	ENSORLG00020022507	rbm42	100	62.590	Oryzias_latipes_hni
ENSHCOG00000021214	rbm42	100	76.658	ENSORLG00015000659	rbm42	100	76.225	Oryzias_latipes_hsok
ENSHCOG00000021214	rbm42	63	74.016	ENSOMEG00000014332	rbm42	95	77.734	Oryzias_melastigma
ENSHCOG00000021214	rbm42	100	71.703	ENSPKIG00000015165	rbm42	100	71.703	Paramormyrops_kingsleyae
ENSHCOG00000021214	rbm42	53	83.740	ENSPSIG00000013935	-	55	83.740	Pelodiscus_sinensis
ENSHCOG00000021214	rbm42	100	61.279	ENSPMGG00000003569	rbm42	100	95.714	Periophthalmus_magnuspinnatus
ENSHCOG00000021214	rbm42	52	56.542	ENSPMAG00000008633	rbm42	100	48.518	Petromyzon_marinus
ENSHCOG00000021214	rbm42	100	77.833	ENSPFOG00000007701	rbm42	100	77.833	Poecilia_formosa
ENSHCOG00000021214	rbm42	100	77.586	ENSPLAG00000009405	rbm42	100	77.586	Poecilia_latipinna
ENSHCOG00000021214	rbm42	100	77.833	ENSPMEG00000010375	rbm42	100	77.833	Poecilia_mexicana
ENSHCOG00000021214	rbm42	100	77.586	ENSPREG00000018102	rbm42	100	77.586	Poecilia_reticulata
ENSHCOG00000021214	rbm42	100	80.147	ENSPNYG00000014460	rbm42	100	81.527	Pundamilia_nyererei
ENSHCOG00000021214	rbm42	100	69.286	ENSPNAG00000009961	rbm42	100	70.546	Pygocentrus_nattereri
ENSHCOG00000021214	rbm42	100	67.436	ENSSFOG00015019227	rbm42	100	68.396	Scleropages_formosus
ENSHCOG00000021214	rbm42	100	79.707	ENSSMAG00000011935	rbm42	100	77.751	Scophthalmus_maximus
ENSHCOG00000021214	rbm42	100	79.412	ENSSDUG00000004033	rbm42	100	79.657	Seriola_dumerili
ENSHCOG00000021214	rbm42	100	70.690	ENSSLDG00000009918	rbm42	100	86.420	Seriola_lalandi_dorsalis
ENSHCOG00000021214	rbm42	100	79.657	ENSSPAG00000019871	rbm42	100	80.392	Stegastes_partitus
ENSHCOG00000021214	rbm42	100	71.324	ENSTRUG00000024586	-	76	71.078	Takifugu_rubripes
ENSHCOG00000021214	rbm42	99	63.575	ENSTNIG00000011669	rbm42	100	64.045	Tetraodon_nigroviridis
ENSHCOG00000021214	rbm42	100	56.264	ENSXETG00000017599	rbm42	100	56.948	Xenopus_tropicalis
ENSHCOG00000021214	rbm42	100	77.094	ENSXMAG00000012827	rbm42	100	77.094	Xiphophorus_maculatus