EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00000001495 (Gene tree)
Gene ID: -
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Minus strand
Length: 19236 bases
Position: chrJH602173.1:4938001-4957236
Accession: 101708425
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000001968	APOBEC_N	PF08210.11	9.1e-27	1	1
ENSHGLP00000001968	APOBEC_C	PF05240.14	5.1e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000002014	APOBEC1-201	1052	XM_004869517	ENSHGLP00000001968	236 (aa)	XP_004869574	UPI00034F3A02

Gene Model

Click here to download ENSHGLG00000001495's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000001495's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00000001495	APOBEC1	55	40.909	ENSHGLG00000017315	-	62	39.695

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000001495	APOBEC1	99	65.532	ENSG00000111701	APOBEC1	99	65.532	Homo_sapiens
ENSHGLG00000001495	APOBEC1	97	63.478	ENSAMEG00000007098	APOBEC1	97	63.478	Ailuropoda_melanoleuca
ENSHGLG00000001495	APOBEC1	72	42.197	ENSACAG00000028578	-	93	42.197	Anolis_carolinensis
ENSHGLG00000001495	APOBEC1	99	64.255	ENSANAG00000027743	APOBEC1	95	64.255	Aotus_nancymaae
ENSHGLG00000001495	APOBEC1	99	60.426	ENSBTAG00000014683	APOBEC1	99	60.426	Bos_taurus
ENSHGLG00000001495	APOBEC1	93	64.091	ENSCJAG00000005398	APOBEC1	99	64.091	Callithrix_jacchus
ENSHGLG00000001495	APOBEC1	99	64.681	ENSCAFG00000013901	APOBEC1	99	64.681	Canis_familiaris
ENSHGLG00000001495	APOBEC1	99	61.373	ENSCAFG00020003511	APOBEC1	97	61.373	Canis_lupus_dingo
ENSHGLG00000001495	APOBEC1	97	60.870	ENSCHIG00000011898	APOBEC1	95	60.870	Capra_hircus
ENSHGLG00000001495	APOBEC1	59	62.857	ENSTSYG00000029141	APOBEC1	99	62.857	Carlito_syrichta
ENSHGLG00000001495	APOBEC1	91	73.953	ENSCAPG00000015882	-	100	73.953	Cavia_aperea
ENSHGLG00000001495	APOBEC1	99	71.489	ENSCPOG00000033068	APOBEC1	99	71.489	Cavia_porcellus
ENSHGLG00000001495	APOBEC1	99	65.106	ENSCCAG00000022258	APOBEC1	99	65.106	Cebus_capucinus
ENSHGLG00000001495	APOBEC1	99	66.809	ENSCATG00000021613	APOBEC1	95	66.809	Cercocebus_atys
ENSHGLG00000001495	APOBEC1	97	76.957	ENSCLAG00000014645	APOBEC1	100	76.957	Chinchilla_lanigera
ENSHGLG00000001495	APOBEC1	80	66.138	ENSCSAG00000009817	APOBEC1	99	66.138	Chlorocebus_sabaeus
ENSHGLG00000001495	APOBEC1	69	46.988	ENSCPBG00000017398	-	73	46.988	Chrysemys_picta_bellii
ENSHGLG00000001495	APOBEC1	78	44.920	ENSCPBG00000014335	-	76	44.920	Chrysemys_picta_bellii
ENSHGLG00000001495	APOBEC1	78	45.989	ENSCPBG00000014331	-	77	45.989	Chrysemys_picta_bellii
ENSHGLG00000001495	APOBEC1	89	41.038	ENSCPBG00000014327	-	82	41.038	Chrysemys_picta_bellii
ENSHGLG00000001495	APOBEC1	83	42.132	ENSCPBG00000014329	-	54	42.132	Chrysemys_picta_bellii
ENSHGLG00000001495	APOBEC1	83	45.455	ENSCPBG00000014328	-	86	45.455	Chrysemys_picta_bellii
ENSHGLG00000001495	APOBEC1	97	66.812	ENSCANG00000038359	APOBEC1	99	66.812	Colobus_angolensis_palliatus
ENSHGLG00000001495	APOBEC1	97	58.079	ENSCGRG00001011130	Apobec1	100	58.079	Cricetulus_griseus_chok1gshd
ENSHGLG00000001495	APOBEC1	97	58.079	ENSCGRG00000008644	Apobec1	100	58.079	Cricetulus_griseus_crigri
ENSHGLG00000001495	APOBEC1	99	62.128	ENSDNOG00000010926	APOBEC1	99	62.128	Dasypus_novemcinctus
ENSHGLG00000001495	APOBEC1	90	57.009	ENSDORG00000023717	Apobec1	100	57.009	Dipodomys_ordii
ENSHGLG00000001495	APOBEC1	99	66.809	ENSETEG00000004867	APOBEC1	99	66.809	Echinops_telfairi
ENSHGLG00000001495	APOBEC1	98	62.500	ENSEASG00005015951	APOBEC1	97	62.500	Equus_asinus_asinus
ENSHGLG00000001495	APOBEC1	80	61.905	ENSECAG00000017163	APOBEC1	99	61.905	Equus_caballus
ENSHGLG00000001495	APOBEC1	92	61.468	ENSEEUG00000009112	-	97	61.468	Erinaceus_europaeus
ENSHGLG00000001495	APOBEC1	86	52.451	ENSEEUG00000007530	-	97	52.451	Erinaceus_europaeus
ENSHGLG00000001495	APOBEC1	99	64.681	ENSFCAG00000009350	APOBEC1	99	64.681	Felis_catus
ENSHGLG00000001495	APOBEC1	60	45.455	ENSFALG00000007257	-	70	45.455	Ficedula_albicollis
ENSHGLG00000001495	APOBEC1	88	80.288	ENSFDAG00000018470	APOBEC1	100	80.288	Fukomys_damarensis
ENSHGLG00000001495	APOBEC1	72	44.444	ENSGAGG00000006624	-	62	44.444	Gopherus_agassizii
ENSHGLG00000001495	APOBEC1	92	44.749	ENSGAGG00000011837	-	88	46.875	Gopherus_agassizii
ENSHGLG00000001495	APOBEC1	79	41.885	ENSGAGG00000021745	-	69	41.885	Gopherus_agassizii
ENSHGLG00000001495	APOBEC1	86	42.365	ENSGAGG00000021744	-	79	42.365	Gopherus_agassizii
ENSHGLG00000001495	APOBEC1	68	42.593	ENSGAGG00000004947	-	80	42.593	Gopherus_agassizii
ENSHGLG00000001495	APOBEC1	100	98.305	ENSHGLG00100002187	APOBEC1	100	98.305	Heterocephalus_glaber_male
ENSHGLG00000001495	APOBEC1	91	50.935	ENSSTOG00000021971	APOBEC1	100	59.184	Ictidomys_tridecemlineatus
ENSHGLG00000001495	APOBEC1	97	63.755	ENSJJAG00000022108	Apobec1	100	63.755	Jaculus_jaculus
ENSHGLG00000001495	APOBEC1	94	62.162	ENSLAFG00000030837	APOBEC1	99	62.162	Loxodonta_africana
ENSHGLG00000001495	APOBEC1	99	66.809	ENSMFAG00000000277	APOBEC1	99	66.809	Macaca_fascicularis
ENSHGLG00000001495	APOBEC1	99	66.809	ENSMNEG00000029670	APOBEC1	99	66.809	Macaca_nemestrina
ENSHGLG00000001495	APOBEC1	99	66.809	ENSMLEG00000036301	APOBEC1	99	66.809	Mandrillus_leucophaeus
ENSHGLG00000001495	APOBEC1	92	57.870	ENSMAUG00000022167	Apobec1	97	57.870	Mesocricetus_auratus
ENSHGLG00000001495	APOBEC1	99	68.511	ENSMICG00000043645	APOBEC1	99	68.511	Microcebus_murinus
ENSHGLG00000001495	APOBEC1	99	58.298	ENSMODG00000018004	APOBEC1	99	58.298	Monodelphis_domestica
ENSHGLG00000001495	APOBEC1	97	60.088	ENSMUSG00000040613	Apobec1	99	60.833	Mus_musculus
ENSHGLG00000001495	APOBEC1	97	59.649	MGP_PahariEiJ_G0022580	-	99	60.833	Mus_pahari
ENSHGLG00000001495	APOBEC1	97	60.088	MGP_SPRETEiJ_G0029857	Apobec1	99	60.833	Mus_spretus
ENSHGLG00000001495	APOBEC1	99	61.702	ENSMPUG00000017532	APOBEC1	99	61.702	Mustela_putorius_furo
ENSHGLG00000001495	APOBEC1	97	60.262	ENSNGAG00000022607	Apobec1	100	60.262	Nannospalax_galili
ENSHGLG00000001495	APOBEC1	99	66.809	ENSNLEG00000005342	APOBEC1	99	66.809	Nomascus_leucogenys
ENSHGLG00000001495	APOBEC1	99	57.021	ENSMEUG00000013406	APOBEC1	99	57.021	Notamacropus_eugenii
ENSHGLG00000001495	APOBEC1	77	54.696	ENSOPRG00000009508	-	100	54.696	Ochotona_princeps
ENSHGLG00000001495	APOBEC1	99	61.702	ENSOCUG00000025736	APOBEC1	88	61.702	Oryctolagus_cuniculus
ENSHGLG00000001495	APOBEC1	98	64.655	ENSOGAG00000026415	APOBEC1	98	64.655	Otolemur_garnettii
ENSHGLG00000001495	APOBEC1	99	61.277	ENSOARG00000002072	APOBEC1	98	61.277	Ovis_aries
ENSHGLG00000001495	APOBEC1	97	63.043	ENSPPAG00000027657	APOBEC1	97	63.043	Pan_paniscus
ENSHGLG00000001495	APOBEC1	99	64.255	ENSPPRG00000012182	APOBEC1	99	64.255	Panthera_pardus
ENSHGLG00000001495	APOBEC1	99	64.255	ENSPTIG00000020280	APOBEC1	99	64.255	Panthera_tigris_altaica
ENSHGLG00000001495	APOBEC1	99	65.957	ENSPTRG00000004614	APOBEC1	99	65.957	Pan_troglodytes
ENSHGLG00000001495	APOBEC1	99	66.809	ENSPANG00000021027	APOBEC1	99	66.809	Papio_anubis
ENSHGLG00000001495	APOBEC1	96	39.648	ENSPSIG00000012568	-	95	39.648	Pelodiscus_sinensis
ENSHGLG00000001495	APOBEC1	59	48.454	ENSPSIG00000012791	-	74	48.454	Pelodiscus_sinensis
ENSHGLG00000001495	APOBEC1	97	61.135	ENSPEMG00000023841	Apobec1	100	61.135	Peromyscus_maniculatus_bairdii
ENSHGLG00000001495	APOBEC1	99	59.149	ENSPCIG00000023973	APOBEC1	99	59.149	Phascolarctos_cinereus
ENSHGLG00000001495	APOBEC1	100	65.678	ENSPPYG00000004228	APOBEC1	95	65.678	Pongo_abelii
ENSHGLG00000001495	APOBEC1	79	60.963	ENSPCAG00000008733	APOBEC1	100	60.963	Procavia_capensis
ENSHGLG00000001495	APOBEC1	94	64.706	ENSPCOG00000013957	APOBEC1	98	64.706	Propithecus_coquereli
ENSHGLG00000001495	APOBEC1	99	48.511	ENSPVAG00000010709	APOBEC1	99	48.511	Pteropus_vampyrus
ENSHGLG00000001495	APOBEC1	97	58.772	ENSRNOG00000015411	Apobec1	99	58.772	Rattus_norvegicus
ENSHGLG00000001495	APOBEC1	99	65.532	ENSRBIG00000031161	APOBEC1	99	65.532	Rhinopithecus_bieti
ENSHGLG00000001495	APOBEC1	99	65.532	ENSRROG00000033576	APOBEC1	99	65.532	Rhinopithecus_roxellana
ENSHGLG00000001495	APOBEC1	73	62.428	ENSSBOG00000030587	APOBEC1	98	62.428	Saimiri_boliviensis_boliviensis
ENSHGLG00000001495	APOBEC1	96	58.850	ENSSHAG00000008925	APOBEC1	99	58.850	Sarcophilus_harrisii
ENSHGLG00000001495	APOBEC1	56	62.121	ENSSARG00000011972	-	100	62.121	Sorex_araneus
ENSHGLG00000001495	APOBEC1	73	58.140	ENSSARG00000000032	-	100	58.140	Sorex_araneus
ENSHGLG00000001495	APOBEC1	86	40.097	ENSSPUG00000009044	-	79	40.097	Sphenodon_punctatus
ENSHGLG00000001495	APOBEC1	97	65.939	ENSSSCG00000000668	APOBEC1	97	65.939	Sus_scrofa
ENSHGLG00000001495	APOBEC1	61	47.586	ENSTGUG00000013118	-	99	47.586	Taeniopygia_guttata
ENSHGLG00000001495	APOBEC1	99	61.702	ENSTBEG00000010043	APOBEC1	99	61.702	Tupaia_belangeri
ENSHGLG00000001495	APOBEC1	79	59.893	ENSTTRG00000014015	APOBEC1	100	59.893	Tursiops_truncatus
ENSHGLG00000001495	APOBEC1	97	63.913	ENSUAMG00000011636	APOBEC1	94	63.913	Ursus_americanus
ENSHGLG00000001495	APOBEC1	97	63.913	ENSUMAG00000016552	APOBEC1	94	63.913	Ursus_maritimus
ENSHGLG00000001495	APOBEC1	99	62.128	ENSVPAG00000001343	APOBEC1	99	62.128	Vicugna_pacos
ENSHGLG00000001495	APOBEC1	99	65.532	ENSVVUG00000010522	APOBEC1	99	65.532	Vulpes_vulpes