EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00000001544 (Gene tree)
Gene ID: -
Gene Symbol: UPF3A
Alias: HUPF3A|RENT3A|UPF3
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Minus strand
Length: 15051 bases
Position: chrJH602106.1:136642-151692
Accession: 101724600
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000002034	Smg4_UPF3	PF03467.15	8.1e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000002081	UPF3A-201	1257	XM_004921142	ENSHGLP00000002034	418 (aa)	XP_004921199	-

Gene Model

Click here to download ENSHGLG00000001544's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000001544's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00000001544	UPF3A	66	45.205	ENSHGLG00000011189	-	69	49.324

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000001544	UPF3A	90	71.611	ENSG00000169062	UPF3A	98	74.757	Homo_sapiens
ENSHGLG00000001544	UPF3A	57	58.800	ENSAPOG00000012775	upf3b	61	54.770	Acanthochromis_polyacanthus
ENSHGLG00000001544	UPF3A	50	66.825	ENSAPOG00000013484	upf3a	82	54.453	Acanthochromis_polyacanthus
ENSHGLG00000001544	UPF3A	84	71.935	ENSAMEG00000004259	UPF3A	80	71.935	Ailuropoda_melanoleuca
ENSHGLG00000001544	UPF3A	50	66.351	ENSACIG00000020468	upf3a	70	74.286	Amphilophus_citrinellus
ENSHGLG00000001544	UPF3A	60	54.275	ENSAOCG00000000706	upf3b	74	48.387	Amphiprion_ocellaris
ENSHGLG00000001544	UPF3A	50	67.633	ENSAOCG00000020784	upf3a	82	54.453	Amphiprion_ocellaris
ENSHGLG00000001544	UPF3A	57	58.800	ENSAPEG00000005545	upf3b	54	59.600	Amphiprion_percula
ENSHGLG00000001544	UPF3A	50	67.633	ENSAPEG00000003519	upf3a	82	54.453	Amphiprion_percula
ENSHGLG00000001544	UPF3A	93	54.962	ENSATEG00000005843	upf3a	82	54.707	Anabas_testudineus
ENSHGLG00000001544	UPF3A	74	66.462	ENSACAG00000001540	UPF3A	78	66.462	Anolis_carolinensis
ENSHGLG00000001544	UPF3A	90	68.286	ENSANAG00000021713	UPF3A	82	68.798	Aotus_nancymaae
ENSHGLG00000001544	UPF3A	62	50.575	ENSANAG00000025598	-	61	51.034	Aotus_nancymaae
ENSHGLG00000001544	UPF3A	50	66.825	ENSACLG00000026274	upf3a	73	56.948	Astatotilapia_calliptera
ENSHGLG00000001544	UPF3A	86	56.630	ENSAMXG00000002608	upf3a	77	56.077	Astyanax_mexicanus
ENSHGLG00000001544	UPF3A	50	73.684	ENSBTAG00000047365	-	95	74.641	Bos_taurus
ENSHGLG00000001544	UPF3A	56	31.349	WBGene00004882	smg-4	51	34.078	Caenorhabditis_elegans
ENSHGLG00000001544	UPF3A	85	71.351	ENSCJAG00000019102	UPF3A	83	70.588	Callithrix_jacchus
ENSHGLG00000001544	UPF3A	91	69.620	ENSCAFG00000006504	UPF3A	85	69.620	Canis_familiaris
ENSHGLG00000001544	UPF3A	91	69.873	ENSCAFG00020014268	UPF3A	83	69.873	Canis_lupus_dingo
ENSHGLG00000001544	UPF3A	62	49.808	ENSCAFG00020004074	UPF3B	62	47.586	Canis_lupus_dingo
ENSHGLG00000001544	UPF3A	84	68.120	ENSCHIG00000008682	UPF3A	76	66.494	Capra_hircus
ENSHGLG00000001544	UPF3A	55	47.391	ENSCHIG00000011454	-	56	42.800	Capra_hircus
ENSHGLG00000001544	UPF3A	64	67.500	ENSTSYG00000001918	UPF3A	74	67.500	Carlito_syrichta
ENSHGLG00000001544	UPF3A	100	81.671	ENSCPOG00000006824	UPF3A	100	81.671	Cavia_porcellus
ENSHGLG00000001544	UPF3A	95	67.143	ENSCCAG00000018406	UPF3A	89	67.619	Cebus_capucinus
ENSHGLG00000001544	UPF3A	90	70.153	ENSCATG00000029733	UPF3A	82	71.540	Cercocebus_atys
ENSHGLG00000001544	UPF3A	90	69.948	ENSCSAG00000017388	UPF3A	82	70.466	Chlorocebus_sabaeus
ENSHGLG00000001544	UPF3A	57	53.909	ENSCPBG00000020685	UPF3B	61	49.650	Chrysemys_picta_bellii
ENSHGLG00000001544	UPF3A	90	72.105	ENSCGRG00001017387	Upf3a	90	72.105	Cricetulus_griseus_chok1gshd
ENSHGLG00000001544	UPF3A	90	71.579	ENSCGRG00000001468	Upf3a	90	71.579	Cricetulus_griseus_crigri
ENSHGLG00000001544	UPF3A	55	55.172	ENSCGRG00000007627	Upf3b	56	60.169	Cricetulus_griseus_crigri
ENSHGLG00000001544	UPF3A	58	57.087	ENSCSEG00000002046	upf3b	54	57.088	Cynoglossus_semilaevis
ENSHGLG00000001544	UPF3A	84	57.465	ENSCSEG00000005106	upf3a	75	57.263	Cynoglossus_semilaevis
ENSHGLG00000001544	UPF3A	90	54.331	ENSCVAG00000022333	upf3a	80	54.068	Cyprinodon_variegatus
ENSHGLG00000001544	UPF3A	57	58.400	ENSDARG00000000489	upf3b	54	58.039	Danio_rerio
ENSHGLG00000001544	UPF3A	80	57.185	ENSDARG00000069297	upf3a	75	57.185	Danio_rerio
ENSHGLG00000001544	UPF3A	84	71.467	ENSDNOG00000034391	UPF3A	92	67.901	Dasypus_novemcinctus
ENSHGLG00000001544	UPF3A	86	61.702	ENSETEG00000010110	UPF3A	83	61.111	Echinops_telfairi
ENSHGLG00000001544	UPF3A	91	68.020	ENSEASG00005021884	UPF3A	81	68.020	Equus_asinus_asinus
ENSHGLG00000001544	UPF3A	62	52.490	ENSEASG00005012919	UPF3B	62	49.310	Equus_asinus_asinus
ENSHGLG00000001544	UPF3A	62	52.490	ENSECAG00000016947	UPF3B	62	49.310	Equus_caballus
ENSHGLG00000001544	UPF3A	86	68.800	ENSECAG00000017141	UPF3A	81	67.766	Equus_caballus
ENSHGLG00000001544	UPF3A	54	58.051	ENSELUG00000020389	upf3b	51	57.143	Esox_lucius
ENSHGLG00000001544	UPF3A	86	57.222	ENSELUG00000011050	upf3a	76	56.667	Esox_lucius
ENSHGLG00000001544	UPF3A	86	71.543	ENSFCAG00000014602	UPF3A	83	70.633	Felis_catus
ENSHGLG00000001544	UPF3A	74	55.183	ENSGMOG00000019615	upf3a	98	56.098	Gadus_morhua
ENSHGLG00000001544	UPF3A	59	57.198	ENSGMOG00000001621	upf3b	54	57.198	Gadus_morhua
ENSHGLG00000001544	UPF3A	86	56.593	ENSGAFG00000021170	upf3a	76	56.593	Gambusia_affinis
ENSHGLG00000001544	UPF3A	74	57.508	ENSGACG00000001972	upf3a	98	57.508	Gasterosteus_aculeatus
ENSHGLG00000001544	UPF3A	56	53.306	ENSGACG00000017435	upf3b	70	57.143	Gasterosteus_aculeatus
ENSHGLG00000001544	UPF3A	84	56.198	ENSGGOG00000041219	-	75	59.829	Gorilla_gorilla
ENSHGLG00000001544	UPF3A	78	58.997	ENSGGOG00000043074	-	67	62.614	Gorilla_gorilla
ENSHGLG00000001544	UPF3A	90	71.355	ENSGGOG00000015428	UPF3A	82	71.867	Gorilla_gorilla
ENSHGLG00000001544	UPF3A	50	66.825	ENSHBUG00000011325	upf3a	76	56.749	Haplochromis_burtoni
ENSHGLG00000001544	UPF3A	66	45.205	ENSHGLG00100001889	-	70	49.324	Heterocephalus_glaber_male
ENSHGLG00000001544	UPF3A	100	100.000	ENSHGLG00100013244	UPF3A	100	100.000	Heterocephalus_glaber_male
ENSHGLG00000001544	UPF3A	57	58.537	ENSHCOG00000017004	upf3b	53	58.537	Hippocampus_comes
ENSHGLG00000001544	UPF3A	57	58.964	ENSIPUG00000019249	upf3b	58	59.144	Ictalurus_punctatus
ENSHGLG00000001544	UPF3A	83	57.102	ENSIPUG00000023450	upf3a	76	57.102	Ictalurus_punctatus
ENSHGLG00000001544	UPF3A	54	77.434	ENSSTOG00000030282	-	95	77.434	Ictidomys_tridecemlineatus
ENSHGLG00000001544	UPF3A	50	77.885	ENSJJAG00000018099	-	98	77.885	Jaculus_jaculus
ENSHGLG00000001544	UPF3A	93	54.061	ENSKMAG00000004381	upf3a	82	53.807	Kryptolebias_marmoratus
ENSHGLG00000001544	UPF3A	50	66.029	ENSLBEG00000021570	upf3a	81	51.145	Labrus_bergylta
ENSHGLG00000001544	UPF3A	58	56.693	ENSLBEG00000028689	upf3b	54	56.800	Labrus_bergylta
ENSHGLG00000001544	UPF3A	50	42.616	ENSLACG00000006645	UPF3A	71	36.397	Latimeria_chalumnae
ENSHGLG00000001544	UPF3A	95	54.167	ENSLOCG00000002665	upf3a	86	54.167	Lepisosteus_oculatus
ENSHGLG00000001544	UPF3A	57	60.729	ENSLOCG00000015238	upf3b	57	60.630	Lepisosteus_oculatus
ENSHGLG00000001544	UPF3A	74	60.411	ENSLAFG00000023358	UPF3A	81	59.475	Loxodonta_africana
ENSHGLG00000001544	UPF3A	66	47.635	ENSLAFG00000001267	UPF3B	68	51.385	Loxodonta_africana
ENSHGLG00000001544	UPF3A	90	65.816	ENSMFAG00000045016	UPF3A	81	66.580	Macaca_fascicularis
ENSHGLG00000001544	UPF3A	90	67.801	ENSMMUG00000007449	UPF3A	81	67.801	Macaca_mulatta
ENSHGLG00000001544	UPF3A	78	67.705	ENSMNEG00000036402	UPF3A	72	67.898	Macaca_nemestrina
ENSHGLG00000001544	UPF3A	74	70.988	ENSMLEG00000014726	UPF3A	74	72.063	Mandrillus_leucophaeus
ENSHGLG00000001544	UPF3A	93	54.962	ENSMAMG00000018364	upf3a	78	55.469	Mastacembelus_armatus
ENSHGLG00000001544	UPF3A	50	66.825	ENSMZEG00005021571	upf3a	73	56.948	Maylandia_zebra
ENSHGLG00000001544	UPF3A	70	66.234	ENSMGAG00000014837	UPF3A	77	66.234	Meleagris_gallopavo
ENSHGLG00000001544	UPF3A	75	77.564	ENSMOCG00000000550	Upf3a	88	77.564	Microtus_ochrogaster
ENSHGLG00000001544	UPF3A	50	64.929	ENSMMOG00000019751	upf3a	78	53.553	Mola_mola
ENSHGLG00000001544	UPF3A	76	70.303	ENSMODG00000003159	UPF3A	77	70.517	Monodelphis_domestica
ENSHGLG00000001544	UPF3A	55	49.153	ENSMALG00000008042	upf3b	55	56.371	Monopterus_albus
ENSHGLG00000001544	UPF3A	90	71.088	MGP_CAROLIEiJ_G0030848	Upf3a	90	71.353	Mus_caroli
ENSHGLG00000001544	UPF3A	90	70.789	ENSMUSG00000038398	Upf3a	90	70.789	Mus_musculus
ENSHGLG00000001544	UPF3A	90	70.526	MGP_PahariEiJ_G0021311	Upf3a	90	70.526	Mus_pahari
ENSHGLG00000001544	UPF3A	90	71.129	MGP_SPRETEiJ_G0031958	Upf3a	90	71.129	Mus_spretus
ENSHGLG00000001544	UPF3A	91	72.194	ENSMPUG00000009139	UPF3A	81	72.194	Mustela_putorius_furo
ENSHGLG00000001544	UPF3A	75	67.674	ENSMLUG00000015905	UPF3A	79	67.674	Myotis_lucifugus
ENSHGLG00000001544	UPF3A	90	73.351	ENSNGAG00000019314	Upf3a	89	73.351	Nannospalax_galili
ENSHGLG00000001544	UPF3A	50	66.825	ENSNBRG00000000828	upf3a	76	56.749	Neolamprologus_brichardi
ENSHGLG00000001544	UPF3A	90	70.918	ENSNLEG00000007563	UPF3A	82	70.918	Nomascus_leucogenys
ENSHGLG00000001544	UPF3A	75	61.569	ENSOPRG00000008846	-	72	62.205	Ochotona_princeps
ENSHGLG00000001544	UPF3A	52	81.567	ENSODEG00000009176	-	86	81.567	Octodon_degus
ENSHGLG00000001544	UPF3A	66	46.897	ENSODEG00000002186	-	68	54.082	Octodon_degus
ENSHGLG00000001544	UPF3A	92	54.569	ENSONIG00000006817	upf3a	76	56.250	Oreochromis_niloticus
ENSHGLG00000001544	UPF3A	74	60.308	ENSOANG00000006985	-	84	60.308	Ornithorhynchus_anatinus
ENSHGLG00000001544	UPF3A	83	59.838	ENSOCUG00000008450	UPF3A	75	60.377	Oryctolagus_cuniculus
ENSHGLG00000001544	UPF3A	84	56.091	ENSORLG00000010911	upf3a	74	56.091	Oryzias_latipes
ENSHGLG00000001544	UPF3A	64	45.552	ENSORLG00000001026	upf3b	61	52.650	Oryzias_latipes
ENSHGLG00000001544	UPF3A	84	55.398	ENSORLG00020014317	upf3a	74	55.398	Oryzias_latipes_hni
ENSHGLG00000001544	UPF3A	64	45.907	ENSORLG00020003758	upf3b	61	53.004	Oryzias_latipes_hni
ENSHGLG00000001544	UPF3A	64	45.907	ENSORLG00015012954	upf3b	61	53.004	Oryzias_latipes_hsok
ENSHGLG00000001544	UPF3A	85	55.742	ENSOMEG00000014425	upf3a	75	55.742	Oryzias_melastigma
ENSHGLG00000001544	UPF3A	64	46.350	ENSOMEG00000014736	upf3b	61	54.064	Oryzias_melastigma
ENSHGLG00000001544	UPF3A	95	67.150	ENSOGAG00000004788	UPF3A	100	67.150	Otolemur_garnettii
ENSHGLG00000001544	UPF3A	79	68.497	ENSOARG00000009004	UPF3A	73	68.497	Ovis_aries
ENSHGLG00000001544	UPF3A	62	47.727	ENSOARG00000007869	-	82	39.589	Ovis_aries
ENSHGLG00000001544	UPF3A	90	70.769	ENSPPAG00000042267	UPF3A	82	71.282	Pan_paniscus
ENSHGLG00000001544	UPF3A	86	71.011	ENSPPRG00000025062	UPF3A	83	70.127	Panthera_pardus
ENSHGLG00000001544	UPF3A	81	57.550	ENSPTRG00000051640	-	78	57.265	Pan_troglodytes
ENSHGLG00000001544	UPF3A	90	71.355	ENSPTRG00000006073	UPF3A	82	71.867	Pan_troglodytes
ENSHGLG00000001544	UPF3A	74	60.372	ENSPTRG00000041187	-	71	60.372	Pan_troglodytes
ENSHGLG00000001544	UPF3A	74	59.443	ENSPTRG00000041835	-	69	55.728	Pan_troglodytes
ENSHGLG00000001544	UPF3A	90	71.173	ENSPANG00000004346	UPF3A	82	72.063	Papio_anubis
ENSHGLG00000001544	UPF3A	57	59.438	ENSPKIG00000019226	upf3b	75	64.957	Paramormyrops_kingsleyae
ENSHGLG00000001544	UPF3A	50	56.731	ENSPKIG00000004422	upf3a	71	59.494	Paramormyrops_kingsleyae
ENSHGLG00000001544	UPF3A	74	67.593	ENSPSIG00000007468	UPF3A	79	67.593	Pelodiscus_sinensis
ENSHGLG00000001544	UPF3A	50	63.507	ENSPMGG00000012696	upf3a	76	53.806	Periophthalmus_magnuspinnatus
ENSHGLG00000001544	UPF3A	90	71.654	ENSPEMG00000019968	-	89	72.149	Peromyscus_maniculatus_bairdii
ENSHGLG00000001544	UPF3A	79	66.423	ENSPCIG00000019590	-	83	76.842	Phascolarctos_cinereus
ENSHGLG00000001544	UPF3A	86	56.474	ENSPFOG00000013222	upf3a	76	56.474	Poecilia_formosa
ENSHGLG00000001544	UPF3A	86	55.495	ENSPLAG00000011960	upf3a	90	57.485	Poecilia_latipinna
ENSHGLG00000001544	UPF3A	86	56.593	ENSPMEG00000000836	upf3a	73	56.593	Poecilia_mexicana
ENSHGLG00000001544	UPF3A	90	71.355	ENSPPYG00000005536	UPF3A	82	71.867	Pongo_abelii
ENSHGLG00000001544	UPF3A	80	62.130	ENSPCAG00000013124	UPF3A	70	63.018	Procavia_capensis
ENSHGLG00000001544	UPF3A	91	66.244	ENSPVAG00000005656	UPF3A	83	66.751	Pteropus_vampyrus
ENSHGLG00000001544	UPF3A	50	66.825	ENSPNYG00000011289	upf3a	73	56.948	Pundamilia_nyererei
ENSHGLG00000001544	UPF3A	86	55.738	ENSPNAG00000019532	upf3a	77	55.464	Pygocentrus_nattereri
ENSHGLG00000001544	UPF3A	57	58.964	ENSPNAG00000021528	upf3b	57	60.588	Pygocentrus_nattereri
ENSHGLG00000001544	UPF3A	96	69.287	ENSRNOG00000017397	Upf3a	99	69.287	Rattus_norvegicus
ENSHGLG00000001544	UPF3A	77	72.050	ENSRBIG00000034007	UPF3A	76	71.687	Rhinopithecus_bieti
ENSHGLG00000001544	UPF3A	74	72.903	ENSRROG00000012212	UPF3A	67	72.903	Rhinopithecus_roxellana
ENSHGLG00000001544	UPF3A	90	61.637	ENSSBOG00000029989	UPF3A	81	62.148	Saimiri_boliviensis_boliviensis
ENSHGLG00000001544	UPF3A	77	69.345	ENSSHAG00000009895	UPF3A	80	69.345	Sarcophilus_harrisii
ENSHGLG00000001544	UPF3A	59	54.724	ENSSFOG00015005614	upf3b	56	59.690	Scleropages_formosus
ENSHGLG00000001544	UPF3A	81	56.342	ENSSFOG00015021851	upf3a	78	53.406	Scleropages_formosus
ENSHGLG00000001544	UPF3A	60	56.757	ENSSMAG00000012913	upf3b	57	59.551	Scophthalmus_maximus
ENSHGLG00000001544	UPF3A	93	45.088	ENSSDUG00000009680	upf3a	87	61.842	Seriola_dumerili
ENSHGLG00000001544	UPF3A	50	66.667	ENSSLDG00000009700	upf3a	76	56.198	Seriola_lalandi_dorsalis
ENSHGLG00000001544	UPF3A	74	58.025	ENSSARG00000007262	UPF3A	79	59.259	Sorex_araneus
ENSHGLG00000001544	UPF3A	58	57.937	ENSSPAG00000009989	upf3b	62	53.608	Stegastes_partitus
ENSHGLG00000001544	UPF3A	50	65.385	ENSSPAG00000007938	upf3a	74	75.155	Stegastes_partitus
ENSHGLG00000001544	UPF3A	91	67.595	ENSSSCG00000024679	UPF3A	81	71.988	Sus_scrofa
ENSHGLG00000001544	UPF3A	77	67.656	ENSTGUG00000009493	UPF3A	86	67.656	Taeniopygia_guttata
ENSHGLG00000001544	UPF3A	87	54.987	ENSTRUG00000012730	upf3a	76	55.801	Takifugu_rubripes
ENSHGLG00000001544	UPF3A	82	50.435	ENSTNIG00000014973	upf3a	90	50.281	Tetraodon_nigroviridis
ENSHGLG00000001544	UPF3A	67	60.274	ENSTBEG00000017186	-	92	60.274	Tupaia_belangeri
ENSHGLG00000001544	UPF3A	95	56.386	ENSTTRG00000015414	UPF3A	87	56.386	Tursiops_truncatus
ENSHGLG00000001544	UPF3A	62	49.808	ENSUAMG00000024565	UPF3B	61	47.241	Ursus_americanus
ENSHGLG00000001544	UPF3A	60	49.606	ENSUMAG00000002150	UPF3B	55	53.435	Ursus_maritimus
ENSHGLG00000001544	UPF3A	78	67.257	ENSVPAG00000003525	UPF3A	85	67.257	Vicugna_pacos
ENSHGLG00000001544	UPF3A	91	67.848	ENSVVUG00000013538	UPF3A	80	68.101	Vulpes_vulpes
ENSHGLG00000001544	UPF3A	62	49.808	ENSVVUG00000011594	UPF3B	90	59.375	Vulpes_vulpes
ENSHGLG00000001544	UPF3A	75	46.884	ENSXETG00000007440	upf3b	76	62.500	Xenopus_tropicalis
ENSHGLG00000001544	UPF3A	80	53.043	ENSXETG00000002572	upf3a	78	53.636	Xenopus_tropicalis
ENSHGLG00000001544	UPF3A	56	52.675	ENSXMAG00000013680	upf3b	55	57.769	Xiphophorus_maculatus
ENSHGLG00000001544	UPF3A	86	56.868	ENSXMAG00000013452	upf3a	76	56.868	Xiphophorus_maculatus