EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00000003080 (Gene tree)
Gene ID: -
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Minus strand
Length: 84104 bases
Position: chrJH602110.1:8626742-8710845
Accession: 101720942
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000004200	ResIII	PF04851.15	5e-12	1	1
ENSHGLP00000004201	ResIII	PF04851.15	5.2e-12	1	1
ENSHGLP00000004201	DEAD	PF00270.29	3.6e-06	1	1
ENSHGLP00000004200	DEAD	PF00270.29	3.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000004258	SMARCA1-201	4387	XM_004860027	ENSHGLP00000004200	1058 (aa)	XP_004860084	UPI00034F842D
ENSHGLT00000004259	SMARCA1-202	3165	XM_004860029	ENSHGLP00000004201	1054 (aa)	XP_004860086	UPI0003502C5E

Gene Model

Click here to download ENSHGLG00000003080's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000003080's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00000003080	SMARCA1	93	84.404	ENSHGLG00000000816	-	93	84.404
ENSHGLG00000003080	SMARCA1	52	30.603	ENSHGLG00000016594	ERCC6L	51	30.603
ENSHGLG00000003080	SMARCA1	50	44.867	ENSHGLG00000011377	-	65	47.012
ENSHGLG00000003080	SMARCA1	55	42.196	ENSHGLG00000008933	CHD1L	62	43.608
ENSHGLG00000003080	SMARCA1	97	74.316	ENSHGLG00000000317	-	93	76.555
ENSHGLG00000003080	SMARCA1	59	39.024	ENSHGLG00000014938	CHD9	57	43.426
ENSHGLG00000003080	SMARCA1	51	39.356	ENSHGLG00000006537	-	88	40.219

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000003080	SMARCA1	100	97.070	ENSG00000102038	SMARCA1	100	97.070	Homo_sapiens
ENSHGLG00000003080	SMARCA1	92	82.787	ENSAPOG00000016035	smarca5	98	83.151	Acanthochromis_polyacanthus
ENSHGLG00000003080	SMARCA1	100	95.234	ENSAMEG00000015218	SMARCA1	100	95.234	Ailuropoda_melanoleuca
ENSHGLG00000003080	SMARCA1	85	83.167	ENSACIG00000016982	smarca5	99	83.185	Amphilophus_citrinellus
ENSHGLG00000003080	SMARCA1	92	82.787	ENSAOCG00000015578	smarca5	95	81.818	Amphiprion_ocellaris
ENSHGLG00000003080	SMARCA1	92	82.787	ENSAPEG00000011117	smarca5	99	83.255	Amphiprion_percula
ENSHGLG00000003080	SMARCA1	97	78.767	ENSATEG00000012894	smarca5	94	82.884	Anabas_testudineus
ENSHGLG00000003080	SMARCA1	93	91.548	ENSAPLG00000013149	SMARCA1	100	91.548	Anas_platyrhynchos
ENSHGLG00000003080	SMARCA1	97	88.738	ENSACAG00000011376	SMARCA1	95	90.691	Anolis_carolinensis
ENSHGLG00000003080	SMARCA1	98	91.908	ENSANAG00000023098	SMARCA1	98	91.908	Aotus_nancymaae
ENSHGLG00000003080	SMARCA1	96	80.373	ENSACLG00000025356	smarca5	95	82.359	Astatotilapia_calliptera
ENSHGLG00000003080	SMARCA1	98	79.981	ENSAMXG00000005709	smarca5	94	83.282	Astyanax_mexicanus
ENSHGLG00000003080	SMARCA1	88	87.204	ENSAMXG00000011227	smarca1	99	88.970	Astyanax_mexicanus
ENSHGLG00000003080	SMARCA1	99	96.004	ENSBTAG00000002292	SMARCA1	100	96.004	Bos_taurus
ENSHGLG00000003080	SMARCA1	93	63.030	WBGene00002169	isw-1	97	63.030	Caenorhabditis_elegans
ENSHGLG00000003080	SMARCA1	100	96.786	ENSCJAG00000002868	SMARCA1	100	96.786	Callithrix_jacchus
ENSHGLG00000003080	SMARCA1	100	86.698	ENSCAFG00000018673	SMARCA1	100	86.698	Canis_familiaris
ENSHGLG00000003080	SMARCA1	100	96.692	ENSCAFG00020001751	SMARCA1	100	96.692	Canis_lupus_dingo
ENSHGLG00000003080	SMARCA1	100	96.026	ENSCHIG00000009837	SMARCA1	100	96.026	Capra_hircus
ENSHGLG00000003080	SMARCA1	95	96.900	ENSTSYG00000004240	SMARCA1	98	96.334	Carlito_syrichta
ENSHGLG00000003080	SMARCA1	100	96.015	ENSCPOG00000013601	SMARCA1	100	96.015	Cavia_porcellus
ENSHGLG00000003080	SMARCA1	98	93.931	ENSCCAG00000030817	SMARCA1	98	93.931	Cebus_capucinus
ENSHGLG00000003080	SMARCA1	99	97.039	ENSCATG00000015921	SMARCA1	99	97.101	Cercocebus_atys
ENSHGLG00000003080	SMARCA1	100	97.438	ENSCLAG00000002171	SMARCA1	100	97.438	Chinchilla_lanigera
ENSHGLG00000003080	SMARCA1	100	97.164	ENSCSAG00000008460	SMARCA1	100	97.164	Chlorocebus_sabaeus
ENSHGLG00000003080	SMARCA1	95	91.409	ENSCPBG00000001146	SMARCA1	94	91.491	Chrysemys_picta_bellii
ENSHGLG00000003080	SMARCA1	93	72.581	ENSCING00000004110	swi/snf	98	72.581	Ciona_intestinalis
ENSHGLG00000003080	SMARCA1	93	71.916	ENSCSAVG00000004620	-	100	73.497	Ciona_savignyi
ENSHGLG00000003080	SMARCA1	100	96.975	ENSCANG00000007183	SMARCA1	100	96.975	Colobus_angolensis_palliatus
ENSHGLG00000003080	SMARCA1	100	93.579	ENSCGRG00001010776	Smarca1	98	94.321	Cricetulus_griseus_chok1gshd
ENSHGLG00000003080	SMARCA1	95	94.511	ENSCGRG00000015301	Smarca1	98	94.975	Cricetulus_griseus_crigri
ENSHGLG00000003080	SMARCA1	92	82.582	ENSCSEG00000000328	smarca5	95	81.818	Cynoglossus_semilaevis
ENSHGLG00000003080	SMARCA1	93	82.179	ENSCVAG00000008668	smarca5	99	82.803	Cyprinodon_variegatus
ENSHGLG00000003080	SMARCA1	93	83.909	ENSDARG00000012776	smarca1	98	83.909	Danio_rerio
ENSHGLG00000003080	SMARCA1	95	80.476	ENSDARG00000052348	smarca5	95	81.800	Danio_rerio
ENSHGLG00000003080	SMARCA1	98	94.879	ENSDNOG00000004315	SMARCA1	99	94.879	Dasypus_novemcinctus
ENSHGLG00000003080	SMARCA1	100	94.592	ENSDORG00000009270	Smarca1	97	95.665	Dipodomys_ordii
ENSHGLG00000003080	SMARCA1	91	73.133	FBgn0011604	Iswi	98	72.107	Drosophila_melanogaster
ENSHGLG00000003080	SMARCA1	79	91.071	ENSETEG00000017426	SMARCA1	86	91.071	Echinops_telfairi
ENSHGLG00000003080	SMARCA1	93	80.592	ENSEBUG00000001239	smarca5	96	80.592	Eptatretus_burgeri
ENSHGLG00000003080	SMARCA1	95	92.048	ENSEASG00005008218	SMARCA1	100	92.020	Equus_asinus_asinus
ENSHGLG00000003080	SMARCA1	100	96.418	ENSECAG00000012106	SMARCA1	100	96.418	Equus_caballus
ENSHGLG00000003080	SMARCA1	77	95.033	ENSEEUG00000014927	SMARCA1	84	95.033	Erinaceus_europaeus
ENSHGLG00000003080	SMARCA1	94	85.244	ENSELUG00000010515	smarca1	98	85.436	Esox_lucius
ENSHGLG00000003080	SMARCA1	100	96.881	ENSFCAG00000018496	SMARCA1	100	96.881	Felis_catus
ENSHGLG00000003080	SMARCA1	88	90.595	ENSFALG00000000209	SMARCA1	98	91.886	Ficedula_albicollis
ENSHGLG00000003080	SMARCA1	95	98.397	ENSFDAG00000009818	SMARCA1	98	98.397	Fukomys_damarensis
ENSHGLG00000003080	SMARCA1	93	82.587	ENSFHEG00000007687	smarca5	94	82.020	Fundulus_heteroclitus
ENSHGLG00000003080	SMARCA1	94	89.225	ENSGALG00000008431	SMARCA1	96	91.376	Gallus_gallus
ENSHGLG00000003080	SMARCA1	93	82.587	ENSGAFG00000017731	smarca5	95	82.020	Gambusia_affinis
ENSHGLG00000003080	SMARCA1	92	91.975	ENSGAGG00000023575	SMARCA1	100	91.975	Gopherus_agassizii
ENSHGLG00000003080	SMARCA1	71	92.000	ENSGGOG00000012841	-	95	92.000	Gorilla_gorilla
ENSHGLG00000003080	SMARCA1	94	99.696	ENSHGLG00100001102	SMARCA1	100	99.401	Heterocephalus_glaber_male
ENSHGLG00000003080	SMARCA1	92	82.720	ENSHCOG00000005458	smarca5	95	82.020	Hippocampus_comes
ENSHGLG00000003080	SMARCA1	95	83.861	ENSIPUG00000016905	Smarca1	99	85.495	Ictalurus_punctatus
ENSHGLG00000003080	SMARCA1	97	79.922	ENSIPUG00000005229	SMARCA5	97	81.947	Ictalurus_punctatus
ENSHGLG00000003080	SMARCA1	100	97.070	ENSSTOG00000014524	SMARCA1	100	97.070	Ictidomys_tridecemlineatus
ENSHGLG00000003080	SMARCA1	100	95.108	ENSJJAG00000002593	Smarca1	100	95.014	Jaculus_jaculus
ENSHGLG00000003080	SMARCA1	92	82.822	ENSKMAG00000003777	smarca5	95	82.121	Kryptolebias_marmoratus
ENSHGLG00000003080	SMARCA1	93	81.414	ENSLBEG00000018112	smarca5	95	81.414	Labrus_bergylta
ENSHGLG00000003080	SMARCA1	88	82.707	ENSLBEG00000013295	SMARCA1	100	83.818	Labrus_bergylta
ENSHGLG00000003080	SMARCA1	96	88.363	ENSLACG00000016697	SMARCA1	98	89.289	Latimeria_chalumnae
ENSHGLG00000003080	SMARCA1	94	87.964	ENSLOCG00000014591	smarca1	97	87.964	Lepisosteus_oculatus
ENSHGLG00000003080	SMARCA1	95	95.129	ENSLAFG00000000896	SMARCA1	99	95.314	Loxodonta_africana
ENSHGLG00000003080	SMARCA1	100	97.070	ENSMFAG00000002117	SMARCA1	99	97.101	Macaca_fascicularis
ENSHGLG00000003080	SMARCA1	99	97.039	ENSMMUG00000008818	SMARCA1	99	97.101	Macaca_mulatta
ENSHGLG00000003080	SMARCA1	99	97.039	ENSMNEG00000041768	SMARCA1	99	97.101	Macaca_nemestrina
ENSHGLG00000003080	SMARCA1	100	97.164	ENSMLEG00000043198	SMARCA1	100	97.164	Mandrillus_leucophaeus
ENSHGLG00000003080	SMARCA1	93	82.790	ENSMAMG00000014294	smarca5	95	82.222	Mastacembelus_armatus
ENSHGLG00000003080	SMARCA1	96	80.373	ENSMZEG00005009369	smarca5	95	82.359	Maylandia_zebra
ENSHGLG00000003080	SMARCA1	95	89.557	ENSMGAG00000007042	SMARCA1	99	89.713	Meleagris_gallopavo
ENSHGLG00000003080	SMARCA1	100	95.256	ENSMAUG00000008133	Smarca1	100	95.256	Mesocricetus_auratus
ENSHGLG00000003080	SMARCA1	100	96.503	ENSMICG00000015768	SMARCA1	100	96.503	Microcebus_murinus
ENSHGLG00000003080	SMARCA1	100	94.877	ENSMOCG00000009464	Smarca1	100	94.877	Microtus_ochrogaster
ENSHGLG00000003080	SMARCA1	93	80.202	ENSMMOG00000005547	smarca5	99	80.202	Mola_mola
ENSHGLG00000003080	SMARCA1	98	88.588	ENSMODG00000013187	-	99	88.577	Monodelphis_domestica
ENSHGLG00000003080	SMARCA1	92	82.413	ENSMALG00000002081	smarca5	97	81.996	Monopterus_albus
ENSHGLG00000003080	SMARCA1	100	94.356	MGP_CAROLIEiJ_G0033034	Smarca1	100	94.167	Mus_caroli
ENSHGLG00000003080	SMARCA1	100	94.356	ENSMUSG00000031099	Smarca1	100	94.167	Mus_musculus
ENSHGLG00000003080	SMARCA1	100	94.356	MGP_PahariEiJ_G0031579	Smarca1	100	94.167	Mus_pahari
ENSHGLG00000003080	SMARCA1	100	94.450	MGP_SPRETEiJ_G0034192	Smarca1	100	94.262	Mus_spretus
ENSHGLG00000003080	SMARCA1	99	96.562	ENSMPUG00000017423	SMARCA1	95	95.421	Mustela_putorius_furo
ENSHGLG00000003080	SMARCA1	98	93.107	ENSMLUG00000029614	SMARCA1	98	92.395	Myotis_lucifugus
ENSHGLG00000003080	SMARCA1	100	95.825	ENSNGAG00000006492	Smarca1	100	95.825	Nannospalax_galili
ENSHGLG00000003080	SMARCA1	93	82.892	ENSNBRG00000004463	smarca5	99	82.323	Neolamprologus_brichardi
ENSHGLG00000003080	SMARCA1	99	96.180	ENSNLEG00000015179	SMARCA1	100	95.140	Nomascus_leucogenys
ENSHGLG00000003080	SMARCA1	90	80.987	ENSMEUG00000008819	SMARCA1	99	80.967	Notamacropus_eugenii
ENSHGLG00000003080	SMARCA1	100	97.154	ENSODEG00000012163	SMARCA1	100	97.154	Octodon_degus
ENSHGLG00000003080	SMARCA1	96	80.471	ENSONIG00000009993	smarca5	95	82.460	Oreochromis_niloticus
ENSHGLG00000003080	SMARCA1	92	92.387	ENSOANG00000002862	SMARCA1	100	92.387	Ornithorhynchus_anatinus
ENSHGLG00000003080	SMARCA1	100	94.423	ENSOCUG00000001047	SMARCA1	100	94.045	Oryctolagus_cuniculus
ENSHGLG00000003080	SMARCA1	92	82.720	ENSORLG00000021998	smarca5	95	82.020	Oryzias_latipes
ENSHGLG00000003080	SMARCA1	92	82.822	ENSORLG00020017679	smarca5	96	81.481	Oryzias_latipes_hni
ENSHGLG00000003080	SMARCA1	92	82.720	ENSORLG00015017210	smarca5	95	81.919	Oryzias_latipes_hsok
ENSHGLG00000003080	SMARCA1	92	82.720	ENSOMEG00000000086	smarca5	95	81.919	Oryzias_melastigma
ENSHGLG00000003080	SMARCA1	100	96.869	ENSOGAG00000004399	SMARCA1	100	96.869	Otolemur_garnettii
ENSHGLG00000003080	SMARCA1	95	95.558	ENSOARG00000014638	SMARCA1	100	96.939	Ovis_aries
ENSHGLG00000003080	SMARCA1	100	97.070	ENSPPAG00000034647	SMARCA1	100	97.070	Pan_paniscus
ENSHGLG00000003080	SMARCA1	100	96.881	ENSPPRG00000008929	SMARCA1	100	96.881	Panthera_pardus
ENSHGLG00000003080	SMARCA1	95	94.887	ENSPTIG00000000915	SMARCA1	98	94.887	Panthera_tigris_altaica
ENSHGLG00000003080	SMARCA1	100	97.070	ENSPTRG00000049876	SMARCA1	99	97.101	Pan_troglodytes
ENSHGLG00000003080	SMARCA1	100	97.070	ENSPANG00000003871	SMARCA1	100	97.070	Papio_anubis
ENSHGLG00000003080	SMARCA1	93	84.709	ENSPKIG00000013411	smarca1	98	85.996	Paramormyrops_kingsleyae
ENSHGLG00000003080	SMARCA1	95	90.128	ENSPSIG00000010101	SMARCA1	100	91.667	Pelodiscus_sinensis
ENSHGLG00000003080	SMARCA1	100	95.731	ENSPEMG00000017503	Smarca1	100	95.731	Peromyscus_maniculatus_bairdii
ENSHGLG00000003080	SMARCA1	95	90.909	ENSPCIG00000015460	SMARCA1	98	90.991	Phascolarctos_cinereus
ENSHGLG00000003080	SMARCA1	92	82.822	ENSPFOG00000007649	smarca5	95	82.020	Poecilia_formosa
ENSHGLG00000003080	SMARCA1	92	82.822	ENSPLAG00000003363	smarca5	95	82.020	Poecilia_latipinna
ENSHGLG00000003080	SMARCA1	92	82.720	ENSPMEG00000019849	smarca5	95	81.919	Poecilia_mexicana
ENSHGLG00000003080	SMARCA1	92	82.720	ENSPREG00000023250	smarca5	95	81.919	Poecilia_reticulata
ENSHGLG00000003080	SMARCA1	98	94.316	ENSPPYG00000020703	SMARCA1	98	94.316	Pongo_abelii
ENSHGLG00000003080	SMARCA1	78	90.909	ENSPCOG00000020722	SMARCA1	94	91.189	Propithecus_coquereli
ENSHGLG00000003080	SMARCA1	92	96.173	ENSPVAG00000003805	SMARCA1	92	96.173	Pteropus_vampyrus
ENSHGLG00000003080	SMARCA1	56	83.288	ENSPNYG00000012299	smarca5	92	82.133	Pundamilia_nyererei
ENSHGLG00000003080	SMARCA1	100	94.896	ENSRNOG00000003762	Smarca1	100	94.707	Rattus_norvegicus
ENSHGLG00000003080	SMARCA1	100	96.975	ENSRROG00000034167	SMARCA1	100	96.975	Rhinopithecus_roxellana
ENSHGLG00000003080	SMARCA1	96	94.482	ENSSBOG00000020641	SMARCA1	100	97.347	Saimiri_boliviensis_boliviensis
ENSHGLG00000003080	SMARCA1	92	85.817	ENSSHAG00000013518	SMARCA1	99	85.817	Sarcophilus_harrisii
ENSHGLG00000003080	SMARCA1	96	85.152	ENSSFOG00015009043	smarca1	98	86.386	Scleropages_formosus
ENSHGLG00000003080	SMARCA1	94	81.552	ENSSFOG00015016794	smarca5	100	82.577	Scleropages_formosus
ENSHGLG00000003080	SMARCA1	93	81.763	ENSSMAG00000004801	smarca5	95	81.763	Scophthalmus_maximus
ENSHGLG00000003080	SMARCA1	93	82.281	ENSSDUG00000020690	smarca5	96	81.717	Seriola_dumerili
ENSHGLG00000003080	SMARCA1	93	82.281	ENSSLDG00000025190	smarca5	96	81.717	Seriola_lalandi_dorsalis
ENSHGLG00000003080	SMARCA1	87	89.674	ENSSARG00000000842	SMARCA1	92	89.674	Sorex_araneus
ENSHGLG00000003080	SMARCA1	95	89.569	ENSSPUG00000000590	SMARCA1	94	91.077	Sphenodon_punctatus
ENSHGLG00000003080	SMARCA1	93	82.179	ENSSPAG00000002894	smarca5	97	82.932	Stegastes_partitus
ENSHGLG00000003080	SMARCA1	98	96.339	ENSSSCG00000012649	SMARCA1	99	96.339	Sus_scrofa
ENSHGLG00000003080	SMARCA1	93	91.141	ENSTGUG00000003899	-	100	91.141	Taeniopygia_guttata
ENSHGLG00000003080	SMARCA1	93	82.383	ENSTRUG00000014094	smarca5	95	81.818	Takifugu_rubripes
ENSHGLG00000003080	SMARCA1	92	81.762	ENSTNIG00000017717	smarca5	94	80.909	Tetraodon_nigroviridis
ENSHGLG00000003080	SMARCA1	94	90.161	ENSTBEG00000014973	SMARCA1	99	90.151	Tupaia_belangeri
ENSHGLG00000003080	SMARCA1	94	94.141	ENSTTRG00000006168	SMARCA1	100	94.141	Tursiops_truncatus
ENSHGLG00000003080	SMARCA1	100	96.314	ENSUAMG00000020201	SMARCA1	100	96.314	Ursus_americanus
ENSHGLG00000003080	SMARCA1	94	92.394	ENSUMAG00000004073	SMARCA1	97	96.594	Ursus_maritimus
ENSHGLG00000003080	SMARCA1	79	98.413	ENSVPAG00000010492	-	86	98.413	Vicugna_pacos
ENSHGLG00000003080	SMARCA1	95	96.800	ENSVVUG00000008878	SMARCA1	99	97.074	Vulpes_vulpes
ENSHGLG00000003080	SMARCA1	94	88.153	ENSXETG00000001526	smarca1	99	88.153	Xenopus_tropicalis
ENSHGLG00000003080	SMARCA1	93	82.485	ENSXCOG00000011170	smarca5	98	81.919	Xiphophorus_couchianus
ENSHGLG00000003080	SMARCA1	93	82.485	ENSXMAG00000009678	smarca5	97	84.211	Xiphophorus_maculatus