EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHGLG00000003618 (Gene tree)
Gene ID: -
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Minus strand
Length: 465879 bases
Position: chrJH602096.1:7845945-8311823
Accession: 101724008
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000004936	TUDOR	PF00567.24	7e-28	1	1
ENSHGLP00000004936	SNase	PF00565.17	3e-69	1	5
ENSHGLP00000004936	SNase	PF00565.17	3e-69	2	5
ENSHGLP00000004936	SNase	PF00565.17	3e-69	3	5
ENSHGLP00000004936	SNase	PF00565.17	3e-69	4	5
ENSHGLP00000004936	SNase	PF00565.17	3e-69	5	5
ENSHGLP00000004935	SNase	PF00565.17	1.6e-48	1	3
ENSHGLP00000004935	SNase	PF00565.17	1.6e-48	2	3
ENSHGLP00000004935	SNase	PF00565.17	1.6e-48	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000004999	SND1-201	1827	-	ENSHGLP00000004935	609 (aa)	-	-
ENSHGLT00000005000	SND1-202	3721	XM_004856405	ENSHGLP00000004936	910 (aa)	XP_004856462	A0A0P6K1J6
ENSHGLT00000005001	SND1-203	1607	-	ENSHGLP00000004937	10 (aa)	-	UPI0001F794D9

Gene Model

Click here to download ENSHGLG00000003618's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000003618's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000003618	SND1	100	97.912	ENSG00000197157	SND1	100	97.912	Homo_sapiens
ENSHGLG00000003618	SND1	100	83.443	ENSAPOG00000017599	snd1	99	84.316	Acanthochromis_polyacanthus
ENSHGLG00000003618	SND1	100	97.588	ENSAMEG00000004664	SND1	94	97.588	Ailuropoda_melanoleuca
ENSHGLG00000003618	SND1	98	81.747	ENSACIG00000003551	snd1	99	81.626	Amphilophus_citrinellus
ENSHGLG00000003618	SND1	100	83.224	ENSAOCG00000014166	snd1	99	84.093	Amphiprion_ocellaris
ENSHGLG00000003618	SND1	100	83.224	ENSAPEG00000007067	snd1	99	84.093	Amphiprion_percula
ENSHGLG00000003618	SND1	98	85.403	ENSATEG00000018475	snd1	88	83.808	Anabas_testudineus
ENSHGLG00000003618	SND1	100	98.132	ENSANAG00000034463	SND1	100	98.132	Aotus_nancymaae
ENSHGLG00000003618	SND1	99	82.857	ENSACLG00000022897	snd1	99	83.853	Astatotilapia_calliptera
ENSHGLG00000003618	SND1	97	86.003	ENSAMXG00000016318	snd1	98	84.410	Astyanax_mexicanus
ENSHGLG00000003618	SND1	100	98.242	ENSBTAG00000010692	SND1	100	98.242	Bos_taurus
ENSHGLG00000003618	SND1	95	51.952	WBGene00006626	tsn-1	98	47.311	Caenorhabditis_elegans
ENSHGLG00000003618	SND1	100	97.912	ENSCJAG00000017668	SND1	100	97.912	Callithrix_jacchus
ENSHGLG00000003618	SND1	100	98.022	ENSCAFG00000001700	SND1	100	98.022	Canis_familiaris
ENSHGLG00000003618	SND1	100	98.022	ENSCAFG00020021639	SND1	100	98.022	Canis_lupus_dingo
ENSHGLG00000003618	SND1	100	98.352	ENSCHIG00000023390	SND1	100	98.352	Capra_hircus
ENSHGLG00000003618	SND1	93	98.239	ENSTSYG00000004979	SND1	96	98.415	Carlito_syrichta
ENSHGLG00000003618	SND1	99	84.889	ENSCAPG00000010677	SND1	98	84.933	Cavia_aperea
ENSHGLG00000003618	SND1	100	98.132	ENSCPOG00000006251	SND1	100	98.132	Cavia_porcellus
ENSHGLG00000003618	SND1	100	98.242	ENSCCAG00000036847	SND1	100	98.242	Cebus_capucinus
ENSHGLG00000003618	SND1	100	98.132	ENSCATG00000035214	SND1	100	98.132	Cercocebus_atys
ENSHGLG00000003618	SND1	100	98.194	ENSCLAG00000011796	SND1	100	98.194	Chinchilla_lanigera
ENSHGLG00000003618	SND1	100	98.132	ENSCSAG00000010182	SND1	100	98.132	Chlorocebus_sabaeus
ENSHGLG00000003618	SND1	93	73.369	ENSCHOG00000002218	SND1	86	87.255	Choloepus_hoffmanni
ENSHGLG00000003618	SND1	100	91.538	ENSCPBG00000018094	SND1	98	92.489	Chrysemys_picta_bellii
ENSHGLG00000003618	SND1	94	61.604	ENSCING00000000524	-	98	56.811	Ciona_intestinalis
ENSHGLG00000003618	SND1	96	62.669	ENSCSAVG00000008807	-	99	58.232	Ciona_savignyi
ENSHGLG00000003618	SND1	100	98.132	ENSCANG00000035119	SND1	100	98.132	Colobus_angolensis_palliatus
ENSHGLG00000003618	SND1	100	96.813	ENSCGRG00001022514	Snd1	100	96.813	Cricetulus_griseus_chok1gshd
ENSHGLG00000003618	SND1	97	96.833	ENSCGRG00000012277	Snd1	99	96.833	Cricetulus_griseus_crigri
ENSHGLG00000003618	SND1	95	87.370	ENSCSEG00000008661	snd1	98	83.781	Cynoglossus_semilaevis
ENSHGLG00000003618	SND1	98	86.074	ENSCVAG00000010316	snd1	100	83.333	Cyprinodon_variegatus
ENSHGLG00000003618	SND1	98	86.097	ENSDARG00000006766	snd1	97	87.050	Danio_rerio
ENSHGLG00000003618	SND1	97	95.265	ENSDNOG00000006795	SND1	100	95.265	Dasypus_novemcinctus
ENSHGLG00000003618	SND1	100	98.352	ENSDORG00000000336	Snd1	100	98.352	Dipodomys_ordii
ENSHGLG00000003618	SND1	98	50.378	FBgn0035121	Tudor-SN	98	50.488	Drosophila_melanogaster
ENSHGLG00000003618	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSHGLG00000003618	SND1	86	65.969	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSHGLG00000003618	SND1	98	98.485	ENSEASG00005008513	SND1	100	96.436	Equus_asinus_asinus
ENSHGLG00000003618	SND1	100	98.022	ENSECAG00000011451	SND1	100	98.022	Equus_caballus
ENSHGLG00000003618	SND1	98	96.627	ENSEEUG00000014737	SND1	100	86.593	Erinaceus_europaeus
ENSHGLG00000003618	SND1	98	83.278	ENSELUG00000001805	snd1	95	82.943	Esox_lucius
ENSHGLG00000003618	SND1	100	98.022	ENSFCAG00000008289	SND1	100	98.022	Felis_catus
ENSHGLG00000003618	SND1	100	98.791	ENSFDAG00000015881	SND1	100	98.791	Fukomys_damarensis
ENSHGLG00000003618	SND1	97	86.125	ENSFHEG00000004093	snd1	97	84.284	Fundulus_heteroclitus
ENSHGLG00000003618	SND1	64	74.294	ENSGMOG00000018932	snd1	64	74.294	Gadus_morhua
ENSHGLG00000003618	SND1	98	85.906	ENSGAFG00000008421	snd1	99	84.780	Gambusia_affinis
ENSHGLG00000003618	SND1	100	53.855	ENSGACG00000019793	snd1	98	54.314	Gasterosteus_aculeatus
ENSHGLG00000003618	SND1	100	98.132	ENSGGOG00000009614	SND1	100	98.132	Gorilla_gorilla
ENSHGLG00000003618	SND1	99	83.370	ENSHBUG00000019135	snd1	99	83.853	Haplochromis_burtoni
ENSHGLG00000003618	SND1	99	99.558	ENSHGLG00100012449	SND1	100	99.558	Heterocephalus_glaber_male
ENSHGLG00000003618	SND1	98	84.899	ENSHCOG00000005266	snd1	98	83.781	Hippocampus_comes
ENSHGLG00000003618	SND1	98	84.783	ENSIPUG00000013279	snd1	98	83.204	Ictalurus_punctatus
ENSHGLG00000003618	SND1	100	98.352	ENSSTOG00000002140	SND1	100	98.352	Ictidomys_tridecemlineatus
ENSHGLG00000003618	SND1	100	98.242	ENSJJAG00000009561	Snd1	100	98.242	Jaculus_jaculus
ENSHGLG00000003618	SND1	98	85.738	ENSKMAG00000016997	snd1	98	84.564	Kryptolebias_marmoratus
ENSHGLG00000003618	SND1	100	84.899	ENSLBEG00000013563	snd1	99	83.315	Labrus_bergylta
ENSHGLG00000003618	SND1	99	85.116	ENSLOCG00000015537	snd1	98	85.116	Lepisosteus_oculatus
ENSHGLG00000003618	SND1	100	97.363	ENSLAFG00000009696	SND1	100	97.363	Loxodonta_africana
ENSHGLG00000003618	SND1	100	98.132	ENSMFAG00000038114	SND1	100	98.132	Macaca_fascicularis
ENSHGLG00000003618	SND1	100	98.132	ENSMMUG00000015432	SND1	100	98.132	Macaca_mulatta
ENSHGLG00000003618	SND1	100	98.132	ENSMNEG00000039808	SND1	100	98.132	Macaca_nemestrina
ENSHGLG00000003618	SND1	100	98.022	ENSMLEG00000029040	SND1	100	98.022	Mandrillus_leucophaeus
ENSHGLG00000003618	SND1	97	86.125	ENSMAMG00000011739	snd1	98	84.040	Mastacembelus_armatus
ENSHGLG00000003618	SND1	99	82.857	ENSMZEG00005005681	snd1	99	83.853	Maylandia_zebra
ENSHGLG00000003618	SND1	100	98.462	ENSMICG00000000097	SND1	100	98.462	Microcebus_murinus
ENSHGLG00000003618	SND1	100	97.473	ENSMOCG00000005040	Snd1	100	97.473	Microtus_ochrogaster
ENSHGLG00000003618	SND1	100	83.004	ENSMMOG00000001795	snd1	99	83.871	Mola_mola
ENSHGLG00000003618	SND1	99	95.206	ENSMODG00000015182	SND1	99	95.206	Monodelphis_domestica
ENSHGLG00000003618	SND1	98	84.732	ENSMALG00000012071	snd1	98	83.482	Monopterus_albus
ENSHGLG00000003618	SND1	100	97.692	MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	Mus_caroli
ENSHGLG00000003618	SND1	100	97.473	ENSMUSG00000001424	Snd1	100	97.473	Mus_musculus
ENSHGLG00000003618	SND1	100	97.692	MGP_PahariEiJ_G0021917	Snd1	100	97.976	Mus_pahari
ENSHGLG00000003618	SND1	100	97.692	MGP_SPRETEiJ_G0029159	Snd1	100	97.692	Mus_spretus
ENSHGLG00000003618	SND1	100	97.582	ENSMPUG00000006545	SND1	100	97.582	Mustela_putorius_furo
ENSHGLG00000003618	SND1	97	96.648	ENSMLUG00000017130	SND1	99	96.648	Myotis_lucifugus
ENSHGLG00000003618	SND1	100	97.802	ENSNGAG00000011186	Snd1	100	97.802	Nannospalax_galili
ENSHGLG00000003618	SND1	99	82.747	ENSNBRG00000006681	snd1	99	83.742	Neolamprologus_brichardi
ENSHGLG00000003618	SND1	100	98.022	ENSNLEG00000012263	SND1	100	98.079	Nomascus_leucogenys
ENSHGLG00000003618	SND1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSHGLG00000003618	SND1	100	98.462	ENSODEG00000011502	SND1	100	98.462	Octodon_degus
ENSHGLG00000003618	SND1	99	82.637	ENSONIG00000011481	snd1	96	83.630	Oreochromis_niloticus
ENSHGLG00000003618	SND1	98	93.919	ENSOANG00000000817	SND1	99	93.311	Ornithorhynchus_anatinus
ENSHGLG00000003618	SND1	100	97.253	ENSOCUG00000001620	SND1	100	97.253	Oryctolagus_cuniculus
ENSHGLG00000003618	SND1	95	87.370	ENSORLG00000015201	snd1	98	83.687	Oryzias_latipes
ENSHGLG00000003618	SND1	95	87.370	ENSORLG00020013991	snd1	98	83.799	Oryzias_latipes_hni
ENSHGLG00000003618	SND1	95	87.370	ENSORLG00015012436	snd1	98	83.799	Oryzias_latipes_hsok
ENSHGLG00000003618	SND1	100	82.675	ENSOMEG00000006406	snd1	98	83.893	Oryzias_melastigma
ENSHGLG00000003618	SND1	100	97.807	ENSOGAG00000013356	SND1	94	97.807	Otolemur_garnettii
ENSHGLG00000003618	SND1	94	98.770	ENSOARG00000002149	SND1	100	95.480	Ovis_aries
ENSHGLG00000003618	SND1	100	98.022	ENSPPAG00000042947	SND1	100	98.022	Pan_paniscus
ENSHGLG00000003618	SND1	100	98.022	ENSPPRG00000004494	SND1	100	98.022	Panthera_pardus
ENSHGLG00000003618	SND1	100	97.912	ENSPTIG00000014214	SND1	100	97.912	Panthera_tigris_altaica
ENSHGLG00000003618	SND1	100	98.022	ENSPTRG00000023911	SND1	100	98.022	Pan_troglodytes
ENSHGLG00000003618	SND1	98	98.822	ENSPANG00000011997	SND1	99	98.077	Papio_anubis
ENSHGLG00000003618	SND1	96	84.433	ENSPKIG00000023494	snd1	98	81.465	Paramormyrops_kingsleyae
ENSHGLG00000003618	SND1	91	85.353	ENSPMGG00000003629	snd1	100	82.395	Periophthalmus_magnuspinnatus
ENSHGLG00000003618	SND1	100	97.582	ENSPEMG00000010240	Snd1	100	97.582	Peromyscus_maniculatus_bairdii
ENSHGLG00000003618	SND1	93	79.159	ENSPMAG00000007915	-	99	73.672	Petromyzon_marinus
ENSHGLG00000003618	SND1	99	95.541	ENSPCIG00000011561	SND1	99	95.541	Phascolarctos_cinereus
ENSHGLG00000003618	SND1	98	85.570	ENSPFOG00000001557	snd1	99	84.205	Poecilia_formosa
ENSHGLG00000003618	SND1	98	85.738	ENSPLAG00000018459	snd1	96	84.205	Poecilia_latipinna
ENSHGLG00000003618	SND1	98	86.074	ENSPMEG00000006803	snd1	99	84.650	Poecilia_mexicana
ENSHGLG00000003618	SND1	98	86.074	ENSPREG00000002189	snd1	99	84.538	Poecilia_reticulata
ENSHGLG00000003618	SND1	98	98.653	ENSPPYG00000017972	SND1	100	97.891	Pongo_abelii
ENSHGLG00000003618	SND1	100	85.714	ENSPCAG00000011305	SND1	99	85.619	Procavia_capensis
ENSHGLG00000003618	SND1	100	98.132	ENSPCOG00000026791	SND1	100	98.132	Propithecus_coquereli
ENSHGLG00000003618	SND1	100	96.154	ENSPVAG00000013945	SND1	100	96.154	Pteropus_vampyrus
ENSHGLG00000003618	SND1	99	82.857	ENSPNYG00000000932	snd1	99	83.853	Pundamilia_nyererei
ENSHGLG00000003618	SND1	98	85.452	ENSPNAG00000001206	snd1	98	84.111	Pygocentrus_nattereri
ENSHGLG00000003618	SND1	99	97.357	ENSRNOG00000031173	Snd1	99	97.357	Rattus_norvegicus
ENSHGLG00000003618	SND1	93	98.684	ENSRBIG00000027782	-	93	98.859	Rhinopithecus_bieti
ENSHGLG00000003618	SND1	100	98.132	ENSRROG00000033020	SND1	100	98.132	Rhinopithecus_roxellana
ENSHGLG00000003618	SND1	100	98.132	ENSSBOG00000032461	SND1	100	98.132	Saimiri_boliviensis_boliviensis
ENSHGLG00000003618	SND1	98	92.342	ENSSHAG00000015359	SND1	100	92.342	Sarcophilus_harrisii
ENSHGLG00000003618	SND1	100	81.937	ENSSFOG00015001103	snd1	98	83.019	Scleropages_formosus
ENSHGLG00000003618	SND1	98	83.333	ENSSMAG00000001932	snd1	93	83.073	Scophthalmus_maximus
ENSHGLG00000003618	SND1	98	85.235	ENSSDUG00000002699	snd1	92	84.093	Seriola_dumerili
ENSHGLG00000003618	SND1	100	75.987	ENSSLDG00000001950	snd1	98	76.752	Seriola_lalandi_dorsalis
ENSHGLG00000003618	SND1	93	91.725	ENSSARG00000004877	SND1	92	97.170	Sorex_araneus
ENSHGLG00000003618	SND1	93	88.174	ENSSPUG00000017586	SND1	96	88.174	Sphenodon_punctatus
ENSHGLG00000003618	SND1	98	84.602	ENSSPAG00000021398	snd1	96	86.736	Stegastes_partitus
ENSHGLG00000003618	SND1	100	97.912	ENSSSCG00000016590	SND1	100	97.912	Sus_scrofa
ENSHGLG00000003618	SND1	97	86.786	ENSTRUG00000014067	snd1	98	83.221	Takifugu_rubripes
ENSHGLG00000003618	SND1	98	85.786	ENSTNIG00000011019	snd1	97	85.473	Tetraodon_nigroviridis
ENSHGLG00000003618	SND1	93	92.571	ENSTBEG00000003999	SND1	100	92.571	Tupaia_belangeri
ENSHGLG00000003618	SND1	100	93.516	ENSTTRG00000006059	SND1	100	93.516	Tursiops_truncatus
ENSHGLG00000003618	SND1	86	97.909	ENSUAMG00000005604	-	93	97.909	Ursus_americanus
ENSHGLG00000003618	SND1	90	88.372	ENSUAMG00000002820	-	86	88.978	Ursus_americanus
ENSHGLG00000003618	SND1	100	97.912	ENSUMAG00000005960	SND1	100	97.912	Ursus_maritimus
ENSHGLG00000003618	SND1	93	87.125	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSHGLG00000003618	SND1	100	97.802	ENSVVUG00000007226	SND1	100	97.802	Vulpes_vulpes
ENSHGLG00000003618	SND1	93	90.669	ENSXETG00000023043	snd1	100	84.325	Xenopus_tropicalis
ENSHGLG00000003618	SND1	90	87.161	ENSXCOG00000013629	snd1	99	81.235	Xiphophorus_couchianus
ENSHGLG00000003618	SND1	98	85.906	ENSXMAG00000011469	snd1	99	84.761	Xiphophorus_maculatus