EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00000004548 (Gene tree)
Gene ID: -
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Plus strand
Length: 248115 bases
Position: chrJH602103.1:12610254-12858368
Accession: 101721296
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000006228	ResIII	PF04851.15	5.9e-08	1	1
ENSHGLP00000006227	ResIII	PF04851.15	6.1e-08	1	1
ENSHGLP00000006229	ResIII	PF04851.15	6.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000006308	CHD6-204	648	-	ENSHGLP00000006230	215 (aa)	-	-
ENSHGLT00000006306	CHD6-202	11233	XM_013077134	ENSHGLP00000006228	2679 (aa)	-	-
ENSHGLT00000006307	CHD6-203	11182	XM_021239068	ENSHGLP00000006229	2719 (aa)	XP_021094727	UPI00034FCE4D
ENSHGLT00000006305	CHD6-201	11353	XM_004858220	ENSHGLP00000006227	2719 (aa)	XP_004858277	UPI00034FCE4D

Gene Model

Click here to download ENSHGLG00000004548's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000004548's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00000004548	CHD6	79	62.830	ENSHGLG00000014938	CHD9	90	68.625
ENSHGLG00000004548	CHD6	62	61.617	ENSHGLG00000003559	CHD8	61	63.818

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000004548	CHD6	100	91.918	ENSG00000124177	CHD6	99	98.980	Homo_sapiens
ENSHGLG00000004548	CHD6	76	73.580	ENSAPOG00000013736	chd6	67	72.246	Acanthochromis_polyacanthus
ENSHGLG00000004548	CHD6	100	90.588	ENSAMEG00000009496	CHD6	100	90.551	Ailuropoda_melanoleuca
ENSHGLG00000004548	CHD6	78	72.122	ENSATEG00000005608	chd6	71	67.819	Anabas_testudineus
ENSHGLG00000004548	CHD6	69	78.617	ENSAPLG00000015592	CHD6	100	72.564	Anas_platyrhynchos
ENSHGLG00000004548	CHD6	99	66.654	ENSACAG00000006842	CHD6	99	67.458	Anolis_carolinensis
ENSHGLG00000004548	CHD6	100	91.550	ENSANAG00000037548	CHD6	99	92.844	Aotus_nancymaae
ENSHGLG00000004548	CHD6	77	73.779	ENSAMXG00000009576	chd6	74	72.947	Astyanax_mexicanus
ENSHGLG00000004548	CHD6	100	87.073	ENSBTAG00000005733	CHD6	100	87.073	Bos_taurus
ENSHGLG00000004548	CHD6	100	91.550	ENSCJAG00000017920	CHD6	99	92.661	Callithrix_jacchus
ENSHGLG00000004548	CHD6	100	90.294	ENSCAFG00000009236	CHD6	100	90.257	Canis_familiaris
ENSHGLG00000004548	CHD6	99	89.738	ENSCAFG00020012906	CHD6	99	96.655	Canis_lupus_dingo
ENSHGLG00000004548	CHD6	100	86.926	ENSCHIG00000017606	CHD6	100	86.926	Capra_hircus
ENSHGLG00000004548	CHD6	84	91.196	ENSTSYG00000014635	CHD6	100	91.152	Carlito_syrichta
ENSHGLG00000004548	CHD6	100	95.222	ENSCPOG00000015641	CHD6	100	95.222	Cavia_porcellus
ENSHGLG00000004548	CHD6	100	91.697	ENSCCAG00000036828	CHD6	99	92.844	Cebus_capucinus
ENSHGLG00000004548	CHD6	100	91.587	ENSCATG00000039248	CHD6	99	92.844	Cercocebus_atys
ENSHGLG00000004548	CHD6	100	95.266	ENSCLAG00000013743	CHD6	100	95.193	Chinchilla_lanigera
ENSHGLG00000004548	CHD6	100	91.771	ENSCSAG00000013997	CHD6	100	91.734	Chlorocebus_sabaeus
ENSHGLG00000004548	CHD6	91	89.130	ENSCHOG00000012647	CHD6	95	89.130	Choloepus_hoffmanni
ENSHGLG00000004548	CHD6	99	72.903	ENSCPBG00000019382	CHD6	99	73.221	Chrysemys_picta_bellii
ENSHGLG00000004548	CHD6	100	91.807	ENSCANG00000043435	CHD6	99	92.844	Colobus_angolensis_palliatus
ENSHGLG00000004548	CHD6	100	90.110	ENSCGRG00001002694	Chd6	100	90.074	Cricetulus_griseus_chok1gshd
ENSHGLG00000004548	CHD6	82	73.406	ENSDARG00000017244	chd6	79	73.406	Danio_rerio
ENSHGLG00000004548	CHD6	99	89.491	ENSDNOG00000004176	CHD6	99	89.454	Dasypus_novemcinctus
ENSHGLG00000004548	CHD6	99	90.845	ENSEASG00005023433	CHD6	95	97.104	Equus_asinus_asinus
ENSHGLG00000004548	CHD6	99	91.501	ENSECAG00000011761	CHD6	100	91.464	Equus_caballus
ENSHGLG00000004548	CHD6	72	79.740	ENSELUG00000012309	chd6	89	79.740	Esox_lucius
ENSHGLG00000004548	CHD6	100	90.560	ENSFCAG00000003572	CHD6	100	90.522	Felis_catus
ENSHGLG00000004548	CHD6	99	71.993	ENSFALG00000012563	CHD6	98	71.191	Ficedula_albicollis
ENSHGLG00000004548	CHD6	99	96.199	ENSFDAG00000013791	CHD6	99	96.199	Fukomys_damarensis
ENSHGLG00000004548	CHD6	73	69.264	ENSGMOG00000011715	chd6	85	69.407	Gadus_morhua
ENSHGLG00000004548	CHD6	77	71.137	ENSGACG00000000037	chd6	86	69.357	Gasterosteus_aculeatus
ENSHGLG00000004548	CHD6	100	91.844	ENSGGOG00000013123	CHD6	99	92.844	Gorilla_gorilla
ENSHGLG00000004548	CHD6	77	72.128	ENSHBUG00000014701	chd6	66	71.517	Haplochromis_burtoni
ENSHGLG00000004548	CHD6	100	100.000	ENSHGLG00100006401	CHD6	100	100.000	Heterocephalus_glaber_male
ENSHGLG00000004548	CHD6	76	77.717	ENSIPUG00000003692	chd6	74	76.946	Ictalurus_punctatus
ENSHGLG00000004548	CHD6	100	92.904	ENSSTOG00000013382	CHD6	100	92.868	Ictidomys_tridecemlineatus
ENSHGLG00000004548	CHD6	84	77.036	ENSLACG00000010881	CHD6	84	77.094	Latimeria_chalumnae
ENSHGLG00000004548	CHD6	71	80.177	ENSLOCG00000007386	chd6	83	75.725	Lepisosteus_oculatus
ENSHGLG00000004548	CHD6	100	90.996	ENSLAFG00000012144	CHD6	100	90.959	Loxodonta_africana
ENSHGLG00000004548	CHD6	100	91.844	ENSMFAG00000032830	CHD6	99	92.844	Macaca_fascicularis
ENSHGLG00000004548	CHD6	100	91.844	ENSMMUG00000020458	CHD6	99	92.844	Macaca_mulatta
ENSHGLG00000004548	CHD6	100	91.844	ENSMNEG00000040847	CHD6	99	92.844	Macaca_nemestrina
ENSHGLG00000004548	CHD6	99	91.811	ENSMLEG00000031965	CHD6	99	92.844	Mandrillus_leucophaeus
ENSHGLG00000004548	CHD6	76	73.359	ENSMAMG00000013111	chd6	66	71.871	Mastacembelus_armatus
ENSHGLG00000004548	CHD6	99	71.324	ENSMGAG00000001121	CHD6	100	72.056	Meleagris_gallopavo
ENSHGLG00000004548	CHD6	99	92.063	ENSMICG00000016641	CHD6	99	92.477	Microcebus_murinus
ENSHGLG00000004548	CHD6	89	80.182	ENSMODG00000000720	-	99	80.223	Monodelphis_domestica
ENSHGLG00000004548	CHD6	100	88.640	MGP_CAROLIEiJ_G0024604	Chd6	100	94.430	Mus_caroli
ENSHGLG00000004548	CHD6	100	88.824	ENSMUSG00000057133	Chd6	100	94.346	Mus_musculus
ENSHGLG00000004548	CHD6	100	88.750	MGP_PahariEiJ_G0026048	Chd6	100	94.768	Mus_pahari
ENSHGLG00000004548	CHD6	100	88.750	MGP_SPRETEiJ_G0025526	Chd6	100	94.430	Mus_spretus
ENSHGLG00000004548	CHD6	100	89.252	ENSMPUG00000017695	CHD6	100	89.252	Mustela_putorius_furo
ENSHGLG00000004548	CHD6	100	89.963	ENSMLUG00000016247	CHD6	100	89.926	Myotis_lucifugus
ENSHGLG00000004548	CHD6	78	72.929	ENSNBRG00000013839	chd6	79	72.538	Neolamprologus_brichardi
ENSHGLG00000004548	CHD6	100	90.125	ENSNLEG00000006496	CHD6	99	90.483	Nomascus_leucogenys
ENSHGLG00000004548	CHD6	100	87.132	ENSOPRG00000013376	-	100	87.096	Ochotona_princeps
ENSHGLG00000004548	CHD6	82	75.517	ENSONIG00000000393	chd6	81	75.517	Oreochromis_niloticus
ENSHGLG00000004548	CHD6	100	70.196	ENSOANG00000014347	CHD6	99	70.486	Ornithorhynchus_anatinus
ENSHGLG00000004548	CHD6	99	89.183	ENSOCUG00000012394	CHD6	100	89.146	Oryctolagus_cuniculus
ENSHGLG00000004548	CHD6	80	70.774	ENSORLG00020021891	chd6	95	85.772	Oryzias_latipes_hni
ENSHGLG00000004548	CHD6	99	90.717	ENSOGAG00000002427	CHD6	100	90.478	Otolemur_garnettii
ENSHGLG00000004548	CHD6	99	84.895	ENSOARG00000002597	CHD6	100	84.895	Ovis_aries
ENSHGLG00000004548	CHD6	100	90.699	ENSPPRG00000014756	CHD6	100	90.662	Panthera_pardus
ENSHGLG00000004548	CHD6	100	90.588	ENSPTIG00000011094	CHD6	100	90.551	Panthera_tigris_altaica
ENSHGLG00000004548	CHD6	100	91.991	ENSPTRG00000013504	CHD6	100	91.954	Pan_troglodytes
ENSHGLG00000004548	CHD6	100	91.881	ENSPANG00000025554	CHD6	99	93.028	Papio_anubis
ENSHGLG00000004548	CHD6	76	76.841	ENSPKIG00000005578	chd6	79	72.958	Paramormyrops_kingsleyae
ENSHGLG00000004548	CHD6	76	76.387	ENSPMGG00000014877	chd6	84	75.069	Periophthalmus_magnuspinnatus
ENSHGLG00000004548	CHD6	100	79.561	ENSPCIG00000028037	CHD6	100	80.156	Phascolarctos_cinereus
ENSHGLG00000004548	CHD6	78	70.140	ENSPLAG00000003128	chd6	70	70.610	Poecilia_latipinna
ENSHGLG00000004548	CHD6	76	70.122	ENSPREG00000022653	chd6	99	86.264	Poecilia_reticulata
ENSHGLG00000004548	CHD6	100	92.031	ENSPPYG00000011016	CHD6	100	91.994	Pongo_abelii
ENSHGLG00000004548	CHD6	99	91.903	ENSPCOG00000001089	CHD6	99	92.661	Propithecus_coquereli
ENSHGLG00000004548	CHD6	78	74.609	ENSPNYG00000022516	chd6	78	74.384	Pundamilia_nyererei
ENSHGLG00000004548	CHD6	78	73.300	ENSPNAG00000012825	chd6	74	74.387	Pygocentrus_nattereri
ENSHGLG00000004548	CHD6	100	88.162	ENSRNOG00000016744	Chd6	100	88.051	Rattus_norvegicus
ENSHGLG00000004548	CHD6	100	91.624	ENSSBOG00000022089	CHD6	99	92.844	Saimiri_boliviensis_boliviensis
ENSHGLG00000004548	CHD6	100	78.797	ENSSHAG00000017072	CHD6	100	79.384	Sarcophilus_harrisii
ENSHGLG00000004548	CHD6	78	75.797	ENSSFOG00015012920	chd6	81	72.589	Scleropages_formosus
ENSHGLG00000004548	CHD6	58	99.342	ENSSARG00000002615	-	61	99.342	Sorex_araneus
ENSHGLG00000004548	CHD6	100	89.232	ENSSSCG00000007360	CHD6	100	89.776	Sus_scrofa
ENSHGLG00000004548	CHD6	97	73.217	ENSTGUG00000003179	CHD6	99	73.285	Taeniopygia_guttata
ENSHGLG00000004548	CHD6	75	77.231	ENSTNIG00000017487	chd6	85	77.231	Tetraodon_nigroviridis
ENSHGLG00000004548	CHD6	100	87.036	ENSTTRG00000013438	CHD6	100	87.000	Tursiops_truncatus
ENSHGLG00000004548	CHD6	99	89.295	ENSUAMG00000024036	CHD6	95	95.560	Ursus_americanus
ENSHGLG00000004548	CHD6	99	90.768	ENSUMAG00000002017	CHD6	95	95.560	Ursus_maritimus
ENSHGLG00000004548	CHD6	92	88.569	ENSVPAG00000007941	CHD6	93	88.638	Vicugna_pacos
ENSHGLG00000004548	CHD6	100	90.368	ENSVVUG00000029164	CHD6	100	90.331	Vulpes_vulpes
ENSHGLG00000004548	CHD6	99	60.291	ENSXETG00000021445	chd6	99	60.065	Xenopus_tropicalis