EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00000004809 (Gene tree)
Gene ID: -
Gene Symbol: TNRC6C
Alias: FLJ20015|KIAA1582
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Plus strand
Length: 86805 bases
Position: chrJH602114.1:7552030-7638834
Accession: 101726218
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000006577	Ago_hook	PF10427.9	1e-21	1	1
ENSHGLP00000006577	RRM_1	PF00076.22	0.00025	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000006659	TNRC6C-201	7927	XM_004860799	ENSHGLP00000006577	1891 (aa)	XP_021096819	UPI000A3461B7

Gene Model

Click here to download ENSHGLG00000004809's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000004809's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00000004809	TNRC6C	96	34.873	ENSHGLG00000007368	-	93	34.477
ENSHGLG00000004809	TNRC6C	98	40.030	ENSHGLG00000012474	-	94	40.681
ENSHGLG00000004809	TNRC6C	98	36.950	ENSHGLG00000009306	TNRC6B	99	37.164

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000004809	TNRC6C	99	89.698	ENSG00000078687	TNRC6C	100	92.485	Homo_sapiens
ENSHGLG00000004809	TNRC6C	71	54.989	ENSAPOG00000019749	tnrc6c1	98	50.378	Acanthochromis_polyacanthus
ENSHGLG00000004809	TNRC6C	93	86.154	ENSAMEG00000013756	TNRC6C	99	86.319	Ailuropoda_melanoleuca
ENSHGLG00000004809	TNRC6C	93	47.115	ENSACIG00000008075	tnrc6c1	98	52.335	Amphilophus_citrinellus
ENSHGLG00000004809	TNRC6C	69	68.640	ENSAOCG00000023968	tnrc6c1	99	49.392	Amphiprion_ocellaris
ENSHGLG00000004809	TNRC6C	71	54.694	ENSAPEG00000009020	tnrc6c1	99	49.787	Amphiprion_percula
ENSHGLG00000004809	TNRC6C	99	83.705	ENSAPLG00000005456	TNRC6C	100	83.307	Anas_platyrhynchos
ENSHGLG00000004809	TNRC6C	99	83.489	ENSACAG00000016198	TNRC6C	98	83.734	Anolis_carolinensis
ENSHGLG00000004809	TNRC6C	99	89.328	ENSANAG00000021554	TNRC6C	100	92.303	Aotus_nancymaae
ENSHGLG00000004809	TNRC6C	90	50.851	ENSACLG00000000424	tnrc6c1	98	51.633	Astatotilapia_calliptera
ENSHGLG00000004809	TNRC6C	99	85.670	ENSBTAG00000018658	TNRC6C	100	88.396	Bos_taurus
ENSHGLG00000004809	TNRC6C	99	89.537	ENSCJAG00000019431	TNRC6C	100	92.303	Callithrix_jacchus
ENSHGLG00000004809	TNRC6C	99	88.245	ENSCAFG00000005224	TNRC6C	99	88.349	Canis_familiaris
ENSHGLG00000004809	TNRC6C	99	89.723	ENSCAFG00020006661	TNRC6C	100	89.804	Canis_lupus_dingo
ENSHGLG00000004809	TNRC6C	99	87.373	ENSCHIG00000026004	TNRC6C	100	86.792	Capra_hircus
ENSHGLG00000004809	TNRC6C	89	91.415	ENSTSYG00000005403	TNRC6C	100	91.473	Carlito_syrichta
ENSHGLG00000004809	TNRC6C	98	88.075	ENSCAPG00000007307	TNRC6C	99	88.289	Cavia_aperea
ENSHGLG00000004809	TNRC6C	99	93.273	ENSCPOG00000000467	TNRC6C	100	93.948	Cavia_porcellus
ENSHGLG00000004809	TNRC6C	99	90.005	ENSCCAG00000030524	TNRC6C	100	92.777	Cebus_capucinus
ENSHGLG00000004809	TNRC6C	99	89.849	ENSCATG00000033135	TNRC6C	100	92.718	Cercocebus_atys
ENSHGLG00000004809	TNRC6C	99	95.680	ENSCLAG00000011139	TNRC6C	99	95.675	Chinchilla_lanigera
ENSHGLG00000004809	TNRC6C	99	90.173	ENSCSAG00000005167	TNRC6C	99	90.225	Chlorocebus_sabaeus
ENSHGLG00000004809	TNRC6C	70	90.764	ENSCHOG00000000088	TNRC6C	75	89.550	Choloepus_hoffmanni
ENSHGLG00000004809	TNRC6C	93	86.944	ENSCPBG00000027960	TNRC6C	100	87.389	Chrysemys_picta_bellii
ENSHGLG00000004809	TNRC6C	99	89.381	ENSCANG00000041771	TNRC6C	100	92.126	Colobus_angolensis_palliatus
ENSHGLG00000004809	TNRC6C	99	89.291	ENSCGRG00001022686	Tnrc6c	100	89.256	Cricetulus_griseus_chok1gshd
ENSHGLG00000004809	TNRC6C	99	89.637	ENSCGRG00000018041	Tnrc6c	100	89.256	Cricetulus_griseus_crigri
ENSHGLG00000004809	TNRC6C	97	47.539	ENSCSEG00000012744	tnrc6c1	98	48.779	Cynoglossus_semilaevis
ENSHGLG00000004809	TNRC6C	99	52.187	ENSDARG00000076847	tnrc6c1	99	53.212	Danio_rerio
ENSHGLG00000004809	TNRC6C	99	86.342	ENSDNOG00000003247	TNRC6C	99	86.290	Dasypus_novemcinctus
ENSHGLG00000004809	TNRC6C	98	86.141	ENSDORG00000004558	Tnrc6c	100	87.493	Dipodomys_ordii
ENSHGLG00000004809	TNRC6C	82	82.942	ENSETEG00000005527	TNRC6C	90	83.029	Echinops_telfairi
ENSHGLG00000004809	TNRC6C	89	91.163	ENSEASG00005004799	TNRC6C	100	91.222	Equus_asinus_asinus
ENSHGLG00000004809	TNRC6C	99	90.423	ENSECAG00000012486	TNRC6C	99	90.476	Equus_caballus
ENSHGLG00000004809	TNRC6C	88	89.002	ENSEEUG00000010008	TNRC6C	96	89.002	Erinaceus_europaeus
ENSHGLG00000004809	TNRC6C	99	85.551	ENSFCAG00000028358	TNRC6C	100	88.712	Felis_catus
ENSHGLG00000004809	TNRC6C	89	83.485	ENSFALG00000000848	TNRC6C	100	83.258	Ficedula_albicollis
ENSHGLG00000004809	TNRC6C	92	96.254	ENSFDAG00000010368	TNRC6C	100	96.254	Fukomys_damarensis
ENSHGLG00000004809	TNRC6C	93	51.935	ENSFHEG00000002936	tnrc6c1	99	47.925	Fundulus_heteroclitus
ENSHGLG00000004809	TNRC6C	93	85.952	ENSGALG00000001725	TNRC6C	100	88.019	Gallus_gallus
ENSHGLG00000004809	TNRC6C	99	47.998	ENSGAFG00000019019	tnrc6c1	100	49.583	Gambusia_affinis
ENSHGLG00000004809	TNRC6C	93	86.154	ENSGAGG00000022043	TNRC6C	99	86.240	Gopherus_agassizii
ENSHGLG00000004809	TNRC6C	99	89.178	ENSGGOG00000011304	TNRC6C	100	91.716	Gorilla_gorilla
ENSHGLG00000004809	TNRC6C	95	51.058	ENSHBUG00000010846	tnrc6c1	98	51.852	Haplochromis_burtoni
ENSHGLG00000004809	TNRC6C	100	99.315	ENSHGLG00100012597	TNRC6C	100	99.315	Heterocephalus_glaber_male
ENSHGLG00000004809	TNRC6C	99	52.597	ENSIPUG00000000818	tnrc6c1	98	53.217	Ictalurus_punctatus
ENSHGLG00000004809	TNRC6C	99	90.605	ENSSTOG00000009101	TNRC6C	100	91.369	Ictidomys_tridecemlineatus
ENSHGLG00000004809	TNRC6C	99	88.747	ENSJJAG00000017055	Tnrc6c	99	88.641	Jaculus_jaculus
ENSHGLG00000004809	TNRC6C	71	54.140	ENSKMAG00000021023	tnrc6c1	100	50.115	Kryptolebias_marmoratus
ENSHGLG00000004809	TNRC6C	92	75.171	ENSLACG00000015283	TNRC6C	100	75.457	Latimeria_chalumnae
ENSHGLG00000004809	TNRC6C	99	69.285	ENSLOCG00000013377	tnrc6c1	99	56.550	Lepisosteus_oculatus
ENSHGLG00000004809	TNRC6C	99	89.809	ENSLAFG00000011122	TNRC6C	99	89.846	Loxodonta_africana
ENSHGLG00000004809	TNRC6C	99	89.828	ENSMFAG00000043943	TNRC6C	100	92.718	Macaca_fascicularis
ENSHGLG00000004809	TNRC6C	99	90.287	ENSMMUG00000011924	TNRC6C	100	92.718	Macaca_mulatta
ENSHGLG00000004809	TNRC6C	99	89.849	ENSMNEG00000030405	TNRC6C	100	92.658	Macaca_nemestrina
ENSHGLG00000004809	TNRC6C	99	89.953	ENSMLEG00000033436	TNRC6C	100	92.777	Mandrillus_leucophaeus
ENSHGLG00000004809	TNRC6C	95	53.733	ENSMAMG00000023613	tnrc6c1	100	49.944	Mastacembelus_armatus
ENSHGLG00000004809	TNRC6C	95	50.922	ENSMZEG00005010920	tnrc6c1	98	51.633	Maylandia_zebra
ENSHGLG00000004809	TNRC6C	99	78.426	ENSMGAG00000003906	TNRC6C	100	78.270	Meleagris_gallopavo
ENSHGLG00000004809	TNRC6C	89	90.555	ENSMAUG00000021618	Tnrc6c	100	90.496	Mesocricetus_auratus
ENSHGLG00000004809	TNRC6C	99	90.057	ENSMICG00000003952	TNRC6C	100	92.718	Microcebus_murinus
ENSHGLG00000004809	TNRC6C	99	90.967	ENSMOCG00000015879	Tnrc6c	100	91.820	Microtus_ochrogaster
ENSHGLG00000004809	TNRC6C	70	55.980	ENSMMOG00000005203	tnrc6c1	100	50.536	Mola_mola
ENSHGLG00000004809	TNRC6C	99	85.403	ENSMODG00000001785	TNRC6C	99	85.085	Monodelphis_domestica
ENSHGLG00000004809	TNRC6C	99	90.276	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	91.187	Mus_caroli
ENSHGLG00000004809	TNRC6C	99	90.170	ENSMUSG00000025571	Tnrc6c	100	91.129	Mus_musculus
ENSHGLG00000004809	TNRC6C	99	90.329	MGP_PahariEiJ_G0018593	Tnrc6c	100	91.302	Mus_pahari
ENSHGLG00000004809	TNRC6C	99	90.266	MGP_SPRETEiJ_G0018309	Tnrc6c	100	91.187	Mus_spretus
ENSHGLG00000004809	TNRC6C	99	86.169	ENSMPUG00000013348	TNRC6C	98	86.259	Mustela_putorius_furo
ENSHGLG00000004809	TNRC6C	99	82.030	ENSMLUG00000014431	TNRC6C	98	82.063	Myotis_lucifugus
ENSHGLG00000004809	TNRC6C	99	90.856	ENSNGAG00000012203	Tnrc6c	99	90.803	Nannospalax_galili
ENSHGLG00000004809	TNRC6C	90	51.821	ENSNBRG00000005344	tnrc6c1	98	52.679	Neolamprologus_brichardi
ENSHGLG00000004809	TNRC6C	98	87.618	ENSNLEG00000000047	TNRC6C	99	87.513	Nomascus_leucogenys
ENSHGLG00000004809	TNRC6C	89	80.812	ENSMEUG00000005104	TNRC6C	100	80.812	Notamacropus_eugenii
ENSHGLG00000004809	TNRC6C	89	95.549	ENSODEG00000012499	TNRC6C	100	95.727	Octodon_degus
ENSHGLG00000004809	TNRC6C	87	53.440	ENSONIG00000002210	tnrc6c1	99	54.696	Oreochromis_niloticus
ENSHGLG00000004809	TNRC6C	99	61.910	ENSOANG00000009758	-	100	62.035	Ornithorhynchus_anatinus
ENSHGLG00000004809	TNRC6C	85	80.492	ENSOCUG00000006122	TNRC6C	96	76.200	Oryctolagus_cuniculus
ENSHGLG00000004809	TNRC6C	93	47.581	ENSORLG00000009837	tnrc6c1	100	67.658	Oryzias_latipes
ENSHGLG00000004809	TNRC6C	93	46.600	ENSORLG00020016510	tnrc6c1	100	48.941	Oryzias_latipes_hni
ENSHGLG00000004809	TNRC6C	75	42.651	ENSORLG00015000171	tnrc6c1	98	43.936	Oryzias_latipes_hsok
ENSHGLG00000004809	TNRC6C	93	47.766	ENSOMEG00000000357	tnrc6c1	99	48.780	Oryzias_melastigma
ENSHGLG00000004809	TNRC6C	89	89.733	ENSOGAG00000007197	TNRC6C	100	89.791	Otolemur_garnettii
ENSHGLG00000004809	TNRC6C	95	83.089	ENSOARG00000006041	TNRC6C	98	83.252	Ovis_aries
ENSHGLG00000004809	TNRC6C	99	89.666	ENSPPAG00000027160	TNRC6C	100	92.422	Pan_paniscus
ENSHGLG00000004809	TNRC6C	99	85.655	ENSPPRG00000018881	TNRC6C	100	88.830	Panthera_pardus
ENSHGLG00000004809	TNRC6C	90	76.812	ENSPTIG00000008791	TNRC6C	91	82.480	Panthera_tigris_altaica
ENSHGLG00000004809	TNRC6C	99	89.745	ENSPTRG00000009699	TNRC6C	100	92.422	Pan_troglodytes
ENSHGLG00000004809	TNRC6C	99	89.901	ENSPANG00000019994	TNRC6C	100	92.883	Papio_anubis
ENSHGLG00000004809	TNRC6C	86	51.643	ENSPKIG00000005428	tnrc6c1	100	50.306	Paramormyrops_kingsleyae
ENSHGLG00000004809	TNRC6C	92	85.402	ENSPSIG00000018069	TNRC6C	100	85.000	Pelodiscus_sinensis
ENSHGLG00000004809	TNRC6C	58	54.624	ENSPMGG00000022911	tnrc6c1	97	63.158	Periophthalmus_magnuspinnatus
ENSHGLG00000004809	TNRC6C	99	90.223	ENSPEMG00000009785	Tnrc6c	99	90.329	Peromyscus_maniculatus_bairdii
ENSHGLG00000004809	TNRC6C	51	85.082	ENSPCIG00000017421	-	99	85.082	Phascolarctos_cinereus
ENSHGLG00000004809	TNRC6C	97	48.148	ENSPFOG00000012560	tnrc6c1	97	53.955	Poecilia_formosa
ENSHGLG00000004809	TNRC6C	89	49.026	ENSPLAG00000021055	tnrc6c1	100	49.778	Poecilia_latipinna
ENSHGLG00000004809	TNRC6C	99	90.548	ENSPPYG00000008679	TNRC6C	98	90.591	Pongo_abelii
ENSHGLG00000004809	TNRC6C	86	91.943	ENSPCAG00000012510	TNRC6C	94	91.943	Procavia_capensis
ENSHGLG00000004809	TNRC6C	89	93.014	ENSPCOG00000021451	TNRC6C	100	93.014	Propithecus_coquereli
ENSHGLG00000004809	TNRC6C	88	88.566	ENSPVAG00000002008	TNRC6C	95	88.723	Pteropus_vampyrus
ENSHGLG00000004809	TNRC6C	90	50.513	ENSPNYG00000014477	tnrc6c1	99	52.206	Pundamilia_nyererei
ENSHGLG00000004809	TNRC6C	89	90.818	ENSRNOG00000022395	Tnrc6c	100	90.877	Rattus_norvegicus
ENSHGLG00000004809	TNRC6C	99	89.718	ENSRBIG00000027777	TNRC6C	100	92.540	Rhinopithecus_bieti
ENSHGLG00000004809	TNRC6C	99	89.693	ENSRROG00000042912	TNRC6C	100	92.481	Rhinopithecus_roxellana
ENSHGLG00000004809	TNRC6C	99	89.707	ENSSBOG00000023981	TNRC6C	100	90.261	Saimiri_boliviensis_boliviensis
ENSHGLG00000004809	TNRC6C	61	56.317	ENSSFOG00015004735	-	99	60.836	Scleropages_formosus
ENSHGLG00000004809	TNRC6C	92	48.174	ENSSMAG00000012761	tnrc6c1	99	50.574	Scophthalmus_maximus
ENSHGLG00000004809	TNRC6C	71	55.160	ENSSDUG00000002366	tnrc6c1	99	50.864	Seriola_dumerili
ENSHGLG00000004809	TNRC6C	71	53.803	ENSSLDG00000025613	tnrc6c1	100	50.277	Seriola_lalandi_dorsalis
ENSHGLG00000004809	TNRC6C	84	88.362	ENSSARG00000006816	TNRC6C	91	88.106	Sorex_araneus
ENSHGLG00000004809	TNRC6C	79	83.739	ENSSPUG00000007341	TNRC6C	98	83.322	Sphenodon_punctatus
ENSHGLG00000004809	TNRC6C	70	53.726	ENSSPAG00000014977	tnrc6c1	98	49.122	Stegastes_partitus
ENSHGLG00000004809	TNRC6C	89	86.002	ENSSSCG00000034373	TNRC6C	100	87.805	Sus_scrofa
ENSHGLG00000004809	TNRC6C	92	87.184	ENSTGUG00000007733	TNRC6C	100	86.897	Taeniopygia_guttata
ENSHGLG00000004809	TNRC6C	70	53.830	ENSTRUG00000011685	tnrc6c1	100	48.924	Takifugu_rubripes
ENSHGLG00000004809	TNRC6C	88	54.473	ENSTNIG00000005273	tnrc6c1	100	59.078	Tetraodon_nigroviridis
ENSHGLG00000004809	TNRC6C	57	89.453	ENSTBEG00000005046	TNRC6C	95	89.453	Tupaia_belangeri
ENSHGLG00000004809	TNRC6C	92	90.057	ENSTTRG00000010828	TNRC6C	99	90.115	Tursiops_truncatus
ENSHGLG00000004809	TNRC6C	99	87.302	ENSUMAG00000013614	TNRC6C	99	87.580	Ursus_maritimus
ENSHGLG00000004809	TNRC6C	89	91.168	ENSVVUG00000015268	TNRC6C	100	91.227	Vulpes_vulpes
ENSHGLG00000004809	TNRC6C	89	74.838	ENSXETG00000019470	tnrc6c	100	74.544	Xenopus_tropicalis
ENSHGLG00000004809	TNRC6C	99	47.895	ENSXMAG00000025971	tnrc6c1	99	50.821	Xiphophorus_maculatus