EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00000006568 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Minus strand
Length: 7167 bases
Position: chrJH602221.1:1595877-1603043
Accession: 101720806
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000009137	LSM	PF01423.22	8.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000009237	-	321	-	ENSHGLP00000009138	106 (aa)	-	-
ENSHGLT00000009236	-	965	XM_004873345	ENSHGLP00000009137	139 (aa)	XP_004873402	A0A0P6JG68

Gene Model

Click here to download ENSHGLG00000006568's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000006568's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00000006568	LSM4	70	32.000	ENSHGLG00000011299	LSM2	82	35.000
ENSHGLG00000006568	LSM4	52	34.722	ENSHGLG00000009844	-	56	34.722
ENSHGLG00000006568	LSM4	52	34.722	ENSHGLG00000016496	SNRPD3	56	34.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000006568	LSM4	100	97.122	ENSG00000130520	LSM4	100	97.122	Homo_sapiens
ENSHGLG00000006568	LSM4	99	73.649	ENSAPOG00000005643	lsm4	97	74.324	Acanthochromis_polyacanthus
ENSHGLG00000006568	LSM4	99	97.101	ENSAMEG00000011162	LSM4	95	97.101	Ailuropoda_melanoleuca
ENSHGLG00000006568	LSM4	99	76.923	ENSAOCG00000006414	lsm4	97	75.862	Amphiprion_ocellaris
ENSHGLG00000006568	LSM4	99	74.658	ENSAPEG00000006238	lsm4	97	75.342	Amphiprion_percula
ENSHGLG00000006568	LSM4	71	96.970	ENSATEG00000016559	lsm4	88	77.778	Anabas_testudineus
ENSHGLG00000006568	LSM4	100	97.122	ENSANAG00000034659	LSM4	100	97.122	Aotus_nancymaae
ENSHGLG00000006568	LSM4	99	81.944	ENSACLG00000022738	lsm4	97	76.389	Astatotilapia_calliptera
ENSHGLG00000006568	LSM4	99	78.986	ENSAMXG00000016932	lsm4	96	78.986	Astyanax_mexicanus
ENSHGLG00000006568	LSM4	100	97.122	ENSBTAG00000008578	LSM4	100	97.122	Bos_taurus
ENSHGLG00000006568	LSM4	60	75.904	WBGene00003078	lsm-4	67	75.904	Caenorhabditis_elegans
ENSHGLG00000006568	LSM4	100	97.122	ENSCJAG00000014171	LSM4	100	97.122	Callithrix_jacchus
ENSHGLG00000006568	LSM4	99	97.101	ENSCAFG00000014900	LSM4	90	97.101	Canis_familiaris
ENSHGLG00000006568	LSM4	100	97.122	ENSCAFG00020012137	LSM4	100	97.122	Canis_lupus_dingo
ENSHGLG00000006568	LSM4	99	97.101	ENSCHIG00000010928	LSM4	91	97.101	Capra_hircus
ENSHGLG00000006568	LSM4	100	96.403	ENSTSYG00000030906	LSM4	100	96.403	Carlito_syrichta
ENSHGLG00000006568	LSM4	100	96.403	ENSCAPG00000014140	LSM4	100	96.403	Cavia_aperea
ENSHGLG00000006568	LSM4	100	96.403	ENSCPOG00000024117	LSM4	100	96.403	Cavia_porcellus
ENSHGLG00000006568	LSM4	100	97.122	ENSCCAG00000036308	LSM4	100	97.122	Cebus_capucinus
ENSHGLG00000006568	LSM4	100	97.122	ENSCATG00000029311	LSM4	100	97.122	Cercocebus_atys
ENSHGLG00000006568	LSM4	100	97.122	ENSCLAG00000010828	LSM4	100	97.122	Chinchilla_lanigera
ENSHGLG00000006568	LSM4	100	97.122	ENSCSAG00000005370	LSM4	100	97.122	Chlorocebus_sabaeus
ENSHGLG00000006568	LSM4	100	79.856	ENSCPBG00000012925	LSM4	100	84.892	Chrysemys_picta_bellii
ENSHGLG00000006568	LSM4	62	91.860	ENSCING00000007519	-	69	92.045	Ciona_intestinalis
ENSHGLG00000006568	LSM4	62	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSHGLG00000006568	LSM4	100	97.122	ENSCANG00000043686	LSM4	100	97.122	Colobus_angolensis_palliatus
ENSHGLG00000006568	LSM4	100	92.806	ENSCGRG00001014436	Lsm4	100	92.806	Cricetulus_griseus_chok1gshd
ENSHGLG00000006568	LSM4	99	92.754	ENSCGRG00000009398	Lsm4	100	92.754	Cricetulus_griseus_crigri
ENSHGLG00000006568	LSM4	70	95.876	ENSCSEG00000016127	lsm4	96	76.642	Cynoglossus_semilaevis
ENSHGLG00000006568	LSM4	99	77.536	ENSCVAG00000010601	lsm4	97	77.536	Cyprinodon_variegatus
ENSHGLG00000006568	LSM4	88	74.797	ENSCVAG00000021828	lsm4	94	74.797	Cyprinodon_variegatus
ENSHGLG00000006568	LSM4	97	77.305	ENSDARG00000023852	lsm4	99	76.596	Danio_rerio
ENSHGLG00000006568	LSM4	100	96.403	ENSDORG00000024225	Lsm4	100	96.403	Dipodomys_ordii
ENSHGLG00000006568	LSM4	70	81.443	FBgn0032240	CG17768	57	88.636	Drosophila_melanogaster
ENSHGLG00000006568	LSM4	89	95.161	ENSETEG00000007762	-	100	95.161	Echinops_telfairi
ENSHGLG00000006568	LSM4	58	88.750	ENSEBUG00000003639	-	53	88.750	Eptatretus_burgeri
ENSHGLG00000006568	LSM4	100	97.122	ENSECAG00000010141	LSM4	57	97.122	Equus_caballus
ENSHGLG00000006568	LSM4	95	81.818	ENSELUG00000012821	lsm4	100	81.818	Esox_lucius
ENSHGLG00000006568	LSM4	100	97.122	ENSFCAG00000040580	LSM4	100	97.122	Felis_catus
ENSHGLG00000006568	LSM4	99	78.986	ENSFALG00000009478	LSM4	99	84.783	Ficedula_albicollis
ENSHGLG00000006568	LSM4	99	95.652	ENSFDAG00000010124	LSM4	100	95.652	Fukomys_damarensis
ENSHGLG00000006568	LSM4	98	78.014	ENSGMOG00000007729	lsm4	99	76.027	Gadus_morhua
ENSHGLG00000006568	LSM4	100	79.137	ENSGALG00000003385	LSM4	100	84.892	Gallus_gallus
ENSHGLG00000006568	LSM4	79	83.065	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSHGLG00000006568	LSM4	68	97.895	ENSGACG00000008140	lsm4	87	80.000	Gasterosteus_aculeatus
ENSHGLG00000006568	LSM4	100	79.856	ENSGAGG00000017812	LSM4	100	84.892	Gopherus_agassizii
ENSHGLG00000006568	LSM4	100	97.122	ENSGGOG00000012914	-	100	97.122	Gorilla_gorilla
ENSHGLG00000006568	LSM4	99	82.517	ENSHBUG00000008858	lsm4	77	76.923	Haplochromis_burtoni
ENSHGLG00000006568	LSM4	67	100.000	ENSHGLG00100007894	LSM4	100	100.000	Heterocephalus_glaber_male
ENSHGLG00000006568	LSM4	99	77.372	ENSHCOG00000008819	lsm4	96	77.372	Hippocampus_comes
ENSHGLG00000006568	LSM4	99	79.710	ENSIPUG00000005368	Lsm4	96	79.710	Ictalurus_punctatus
ENSHGLG00000006568	LSM4	100	97.122	ENSSTOG00000016494	LSM4	100	97.122	Ictidomys_tridecemlineatus
ENSHGLG00000006568	LSM4	100	94.245	ENSJJAG00000017420	Lsm4	100	94.245	Jaculus_jaculus
ENSHGLG00000006568	LSM4	62	97.674	ENSKMAG00000005073	lsm4	97	75.887	Kryptolebias_marmoratus
ENSHGLG00000006568	LSM4	71	96.970	ENSLBEG00000027930	lsm4	59	98.864	Labrus_bergylta
ENSHGLG00000006568	LSM4	99	81.022	ENSLACG00000015861	LSM4	98	81.022	Latimeria_chalumnae
ENSHGLG00000006568	LSM4	93	81.395	ENSLOCG00000002025	lsm4	96	80.292	Lepisosteus_oculatus
ENSHGLG00000006568	LSM4	99	95.652	ENSLAFG00000017459	LSM4	99	95.652	Loxodonta_africana
ENSHGLG00000006568	LSM4	100	97.122	ENSMFAG00000031194	LSM4	100	97.122	Macaca_fascicularis
ENSHGLG00000006568	LSM4	100	97.122	ENSMMUG00000004405	LSM4	100	97.122	Macaca_mulatta
ENSHGLG00000006568	LSM4	100	97.122	ENSMNEG00000042899	LSM4	100	97.122	Macaca_nemestrina
ENSHGLG00000006568	LSM4	100	97.122	ENSMLEG00000027948	LSM4	100	97.122	Mandrillus_leucophaeus
ENSHGLG00000006568	LSM4	99	84.892	ENSMAMG00000006190	lsm4	96	76.642	Mastacembelus_armatus
ENSHGLG00000006568	LSM4	99	82.517	ENSMZEG00005016420	lsm4	97	76.923	Maylandia_zebra
ENSHGLG00000006568	LSM4	99	82.014	ENSMGAG00000004976	LSM4	99	86.957	Meleagris_gallopavo
ENSHGLG00000006568	LSM4	100	96.403	ENSMICG00000000222	LSM4	100	96.403	Microcebus_murinus
ENSHGLG00000006568	LSM4	100	93.525	ENSMOCG00000020861	Lsm4	100	93.525	Microtus_ochrogaster
ENSHGLG00000006568	LSM4	89	92.742	ENSMODG00000015044	-	100	92.742	Monodelphis_domestica
ENSHGLG00000006568	LSM4	99	77.536	ENSMALG00000018159	lsm4	97	77.536	Monopterus_albus
ENSHGLG00000006568	LSM4	100	93.525	MGP_CAROLIEiJ_G0031158	Lsm4	100	93.525	Mus_caroli
ENSHGLG00000006568	LSM4	100	93.525	ENSMUSG00000031848	Lsm4	100	93.525	Mus_musculus
ENSHGLG00000006568	LSM4	100	93.525	MGP_PahariEiJ_G0021623	Lsm4	100	93.525	Mus_pahari
ENSHGLG00000006568	LSM4	100	93.525	MGP_SPRETEiJ_G0032276	Lsm4	100	93.525	Mus_spretus
ENSHGLG00000006568	LSM4	100	97.122	ENSMPUG00000015589	LSM4	100	97.122	Mustela_putorius_furo
ENSHGLG00000006568	LSM4	99	97.101	ENSMLUG00000004010	LSM4	99	97.101	Myotis_lucifugus
ENSHGLG00000006568	LSM4	100	93.525	ENSNGAG00000008644	Lsm4	100	93.525	Nannospalax_galili
ENSHGLG00000006568	LSM4	71	96.939	ENSNBRG00000022150	lsm4	54	98.851	Neolamprologus_brichardi
ENSHGLG00000006568	LSM4	89	89.516	ENSMEUG00000013229	LSM4	100	89.516	Notamacropus_eugenii
ENSHGLG00000006568	LSM4	89	91.129	ENSOPRG00000005575	LSM4	100	91.129	Ochotona_princeps
ENSHGLG00000006568	LSM4	100	73.381	ENSODEG00000011712	-	100	73.381	Octodon_degus
ENSHGLG00000006568	LSM4	100	87.050	ENSODEG00000004519	-	100	87.050	Octodon_degus
ENSHGLG00000006568	LSM4	100	97.122	ENSODEG00000020549	-	100	97.122	Octodon_degus
ENSHGLG00000006568	LSM4	99	81.944	ENSONIG00000012724	lsm4	97	76.389	Oreochromis_niloticus
ENSHGLG00000006568	LSM4	63	93.407	ENSOANG00000007434	LSM4	78	93.407	Ornithorhynchus_anatinus
ENSHGLG00000006568	LSM4	99	84.397	ENSORLG00000008391	lsm4	97	76.596	Oryzias_latipes
ENSHGLG00000006568	LSM4	99	84.397	ENSORLG00020014829	lsm4	97	76.596	Oryzias_latipes_hni
ENSHGLG00000006568	LSM4	99	84.397	ENSORLG00015010205	lsm4	97	76.596	Oryzias_latipes_hsok
ENSHGLG00000006568	LSM4	100	82.734	ENSOMEG00000003606	lsm4	95	75.540	Oryzias_melastigma
ENSHGLG00000006568	LSM4	71	97.980	ENSOGAG00000027992	LSM4	89	93.846	Otolemur_garnettii
ENSHGLG00000006568	LSM4	86	96.639	ENSOARG00000012553	LSM4	94	96.639	Ovis_aries
ENSHGLG00000006568	LSM4	100	97.122	ENSPPAG00000044045	-	100	97.122	Pan_paniscus
ENSHGLG00000006568	LSM4	100	97.122	ENSPPRG00000018264	LSM4	100	97.122	Panthera_pardus
ENSHGLG00000006568	LSM4	99	97.101	ENSPTIG00000006306	LSM4	100	97.101	Panthera_tigris_altaica
ENSHGLG00000006568	LSM4	100	97.122	ENSPTRG00000031470	LSM4	100	97.122	Pan_troglodytes
ENSHGLG00000006568	LSM4	100	97.122	ENSPANG00000014399	LSM4	100	97.122	Papio_anubis
ENSHGLG00000006568	LSM4	99	79.562	ENSPKIG00000006154	lsm4	96	79.562	Paramormyrops_kingsleyae
ENSHGLG00000006568	LSM4	99	78.986	ENSPSIG00000012358	LSM4	100	84.058	Pelodiscus_sinensis
ENSHGLG00000006568	LSM4	100	93.525	ENSPEMG00000001358	Lsm4	100	93.525	Peromyscus_maniculatus_bairdii
ENSHGLG00000006568	LSM4	99	78.014	ENSPLAG00000016267	lsm4	62	98.864	Poecilia_latipinna
ENSHGLG00000006568	LSM4	98	78.417	ENSPMEG00000016378	lsm4	63	98.851	Poecilia_mexicana
ENSHGLG00000006568	LSM4	100	97.122	ENSPPYG00000009736	LSM4	100	97.122	Pongo_abelii
ENSHGLG00000006568	LSM4	89	95.161	ENSPCAG00000008513	LSM4	100	95.161	Procavia_capensis
ENSHGLG00000006568	LSM4	100	96.403	ENSPCOG00000019837	LSM4	100	96.403	Propithecus_coquereli
ENSHGLG00000006568	LSM4	100	97.122	ENSPVAG00000015383	LSM4	100	97.122	Pteropus_vampyrus
ENSHGLG00000006568	LSM4	99	82.517	ENSPNYG00000016794	lsm4	97	76.923	Pundamilia_nyererei
ENSHGLG00000006568	LSM4	96	81.343	ENSPNAG00000016598	lsm4	99	80.597	Pygocentrus_nattereri
ENSHGLG00000006568	LSM4	100	93.525	ENSRNOG00000019572	Lsm4	100	93.525	Rattus_norvegicus
ENSHGLG00000006568	LSM4	100	97.122	ENSRBIG00000024717	LSM4	100	97.122	Rhinopithecus_bieti
ENSHGLG00000006568	LSM4	100	97.122	ENSRROG00000045706	LSM4	100	97.122	Rhinopithecus_roxellana
ENSHGLG00000006568	LSM4	60	40.860	YER112W	LSM4	52	39.175	Saccharomyces_cerevisiae
ENSHGLG00000006568	LSM4	90	96.800	ENSSBOG00000022455	LSM4	100	96.800	Saimiri_boliviensis_boliviensis
ENSHGLG00000006568	LSM4	100	93.525	ENSSHAG00000011559	LSM4	100	93.525	Sarcophilus_harrisii
ENSHGLG00000006568	LSM4	99	78.832	ENSSFOG00015021067	lsm4	98	78.417	Scleropages_formosus
ENSHGLG00000006568	LSM4	71	95.960	ENSSMAG00000021020	lsm4	89	83.704	Scophthalmus_maximus
ENSHGLG00000006568	LSM4	71	96.970	ENSSDUG00000009588	lsm4	82	76.259	Seriola_dumerili
ENSHGLG00000006568	LSM4	71	96.970	ENSSLDG00000006827	lsm4	82	76.259	Seriola_lalandi_dorsalis
ENSHGLG00000006568	LSM4	63	98.851	ENSSPUG00000010166	LSM4	56	98.851	Sphenodon_punctatus
ENSHGLG00000006568	LSM4	99	73.649	ENSSPAG00000011615	lsm4	97	74.324	Stegastes_partitus
ENSHGLG00000006568	LSM4	100	97.122	ENSSSCG00000034314	LSM4	100	97.122	Sus_scrofa
ENSHGLG00000006568	LSM4	99	83.571	ENSTRUG00000021737	lsm4	97	75.714	Takifugu_rubripes
ENSHGLG00000006568	LSM4	99	81.429	ENSTNIG00000010191	lsm4	97	78.571	Tetraodon_nigroviridis
ENSHGLG00000006568	LSM4	99	97.101	ENSUAMG00000000665	LSM4	99	97.101	Ursus_americanus
ENSHGLG00000006568	LSM4	100	97.122	ENSUMAG00000009013	LSM4	100	97.122	Ursus_maritimus
ENSHGLG00000006568	LSM4	99	97.101	ENSVVUG00000008136	LSM4	71	97.101	Vulpes_vulpes
ENSHGLG00000006568	LSM4	100	89.928	ENSXETG00000024933	lsm4	100	82.734	Xenopus_tropicalis