EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHGLG00000010900 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Plus strand
Length: 23341 bases
Position: chrJH602221.1:1910315-1933655
Accession: 101704366
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000015240	UPF1_Zn_bind	PF09416.10	6.9e-75	1	1
ENSHGLP00000015239	UPF1_Zn_bind	PF09416.10	7.5e-75	1	1
ENSHGLP00000015240	ResIII	PF04851.15	2.5e-05	1	1
ENSHGLP00000015239	ResIII	PF04851.15	2.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000015395	UPF1-202	3390	XM_004873393	ENSHGLP00000015240	1129 (aa)	XP_004873450	UPI00034F83A0
ENSHGLT00000015394	UPF1-201	3513	-	ENSHGLP00000015239	1170 (aa)	-	-

Gene Model

Click here to download ENSHGLG00000010900's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000010900's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000010900	UPF1	100	99.114	ENSG00000005007	UPF1	100	99.114	Homo_sapiens
ENSHGLG00000010900	UPF1	100	90.220	ENSAPOG00000023773	upf1	100	90.396	Acanthochromis_polyacanthus
ENSHGLG00000010900	UPF1	100	91.343	ENSAPOG00000010916	-	100	91.343	Acanthochromis_polyacanthus
ENSHGLG00000010900	UPF1	100	97.793	ENSAMEG00000011474	UPF1	100	97.793	Ailuropoda_melanoleuca
ENSHGLG00000010900	UPF1	100	90.531	ENSACIG00000019949	upf1	100	90.485	Amphilophus_citrinellus
ENSHGLG00000010900	UPF1	92	93.533	ENSACIG00000010985	-	100	93.629	Amphilophus_citrinellus
ENSHGLG00000010900	UPF1	100	91.431	ENSAOCG00000006352	-	100	91.431	Amphiprion_ocellaris
ENSHGLG00000010900	UPF1	100	89.735	ENSAOCG00000018519	upf1	100	90.227	Amphiprion_ocellaris
ENSHGLG00000010900	UPF1	100	91.431	ENSAPEG00000006292	-	100	91.431	Amphiprion_percula
ENSHGLG00000010900	UPF1	100	89.735	ENSAPEG00000016344	upf1	100	90.227	Amphiprion_percula
ENSHGLG00000010900	UPF1	100	91.431	ENSATEG00000016606	-	100	91.431	Anabas_testudineus
ENSHGLG00000010900	UPF1	100	89.024	ENSATEG00000017867	upf1	100	89.634	Anabas_testudineus
ENSHGLG00000010900	UPF1	93	97.907	ENSAPLG00000009175	UPF1	99	97.907	Anas_platyrhynchos
ENSHGLG00000010900	UPF1	95	96.651	ENSANAG00000024107	UPF1	97	96.651	Aotus_nancymaae
ENSHGLG00000010900	UPF1	100	90.265	ENSACLG00000007181	upf1	100	90.220	Astatotilapia_calliptera
ENSHGLG00000010900	UPF1	100	91.335	ENSACLG00000022630	-	100	91.247	Astatotilapia_calliptera
ENSHGLG00000010900	UPF1	100	91.961	ENSAMXG00000042187	upf1	100	92.403	Astyanax_mexicanus
ENSHGLG00000010900	UPF1	100	98.673	ENSBTAG00000020922	UPF1	100	98.673	Bos_taurus
ENSHGLG00000010900	UPF1	89	50.490	WBGene00004880	smg-2	96	48.135	Caenorhabditis_elegans
ENSHGLG00000010900	UPF1	100	99.114	ENSCJAG00000019627	UPF1	100	99.114	Callithrix_jacchus
ENSHGLG00000010900	UPF1	100	99.115	ENSCAFG00000014578	UPF1	100	99.115	Canis_familiaris
ENSHGLG00000010900	UPF1	100	98.142	ENSCAFG00020012347	UPF1	100	98.142	Canis_lupus_dingo
ENSHGLG00000010900	UPF1	100	98.229	ENSCHIG00000011018	UPF1	100	98.229	Capra_hircus
ENSHGLG00000010900	UPF1	96	97.776	ENSTSYG00000008877	UPF1	99	97.776	Carlito_syrichta
ENSHGLG00000010900	UPF1	93	98.764	ENSCAPG00000005758	UPF1	95	98.764	Cavia_aperea
ENSHGLG00000010900	UPF1	100	96.463	ENSCPOG00000025463	UPF1	100	96.463	Cavia_porcellus
ENSHGLG00000010900	UPF1	100	98.494	ENSCCAG00000032175	UPF1	100	98.494	Cebus_capucinus
ENSHGLG00000010900	UPF1	93	99.332	ENSCATG00000040306	UPF1	98	99.332	Cercocebus_atys
ENSHGLG00000010900	UPF1	96	98.244	ENSCLAG00000004037	UPF1	100	99.620	Chinchilla_lanigera
ENSHGLG00000010900	UPF1	100	98.051	ENSCSAG00000005276	UPF1	100	98.051	Chlorocebus_sabaeus
ENSHGLG00000010900	UPF1	100	95.414	ENSCPBG00000012513	UPF1	100	95.414	Chrysemys_picta_bellii
ENSHGLG00000010900	UPF1	78	77.036	ENSCING00000021399	-	99	77.262	Ciona_intestinalis
ENSHGLG00000010900	UPF1	99	71.016	ENSCSAVG00000006533	-	99	71.016	Ciona_savignyi
ENSHGLG00000010900	UPF1	95	98.411	ENSCANG00000029819	UPF1	99	98.411	Colobus_angolensis_palliatus
ENSHGLG00000010900	UPF1	100	97.343	ENSCGRG00001021067	Upf1	100	97.343	Cricetulus_griseus_chok1gshd
ENSHGLG00000010900	UPF1	95	97.844	ENSCGRG00000013480	Upf1	99	97.844	Cricetulus_griseus_crigri
ENSHGLG00000010900	UPF1	100	91.335	ENSCSEG00000016159	-	100	91.247	Cynoglossus_semilaevis
ENSHGLG00000010900	UPF1	100	85.424	ENSCSEG00000017239	upf1	100	85.424	Cynoglossus_semilaevis
ENSHGLG00000010900	UPF1	100	91.254	ENSCVAG00000010561	upf1	100	91.166	Cyprinodon_variegatus
ENSHGLG00000010900	UPF1	100	91.784	ENSDARG00000016302	upf1	100	92.226	Danio_rerio
ENSHGLG00000010900	UPF1	95	95.514	ENSDORG00000009984	Upf1	96	95.514	Dipodomys_ordii
ENSHGLG00000010900	UPF1	85	70.143	FBgn0030354	Upf1	84	66.919	Drosophila_melanogaster
ENSHGLG00000010900	UPF1	56	83.917	ENSEBUG00000010069	upf1	96	83.917	Eptatretus_burgeri
ENSHGLG00000010900	UPF1	100	97.788	ENSEASG00005006549	UPF1	100	97.788	Equus_asinus_asinus
ENSHGLG00000010900	UPF1	100	97.788	ENSECAG00000010639	UPF1	100	97.788	Equus_caballus
ENSHGLG00000010900	UPF1	100	90.246	ENSELUG00000012916	-	100	90.694	Esox_lucius
ENSHGLG00000010900	UPF1	100	89.622	ENSELUG00000020917	upf1	100	89.886	Esox_lucius
ENSHGLG00000010900	UPF1	100	99.027	ENSFCAG00000009757	UPF1	100	99.027	Felis_catus
ENSHGLG00000010900	UPF1	93	97.062	ENSFALG00000009312	UPF1	96	97.062	Ficedula_albicollis
ENSHGLG00000010900	UPF1	97	97.250	ENSFDAG00000014816	UPF1	100	99.525	Fukomys_damarensis
ENSHGLG00000010900	UPF1	100	87.467	ENSFHEG00000006428	upf1	100	87.467	Fundulus_heteroclitus
ENSHGLG00000010900	UPF1	85	93.103	ENSFHEG00000016276	-	96	93.285	Fundulus_heteroclitus
ENSHGLG00000010900	UPF1	100	91.254	ENSGMOG00000007541	upf1	100	91.608	Gadus_morhua
ENSHGLG00000010900	UPF1	100	96.460	ENSGALG00000003220	UPF1	100	96.460	Gallus_gallus
ENSHGLG00000010900	UPF1	62	94.043	ENSGAFG00000015443	-	88	91.758	Gambusia_affinis
ENSHGLG00000010900	UPF1	100	91.070	ENSGAFG00000004831	upf1	100	90.981	Gambusia_affinis
ENSHGLG00000010900	UPF1	100	96.018	ENSGAGG00000022217	UPF1	100	96.018	Gopherus_agassizii
ENSHGLG00000010900	UPF1	93	98.291	ENSGGOG00000002608	UPF1	99	98.291	Gorilla_gorilla
ENSHGLG00000010900	UPF1	90	89.157	ENSHBUG00000014694	upf1	100	89.157	Haplochromis_burtoni
ENSHGLG00000010900	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSHGLG00000010900	UPF1	96	96.399	ENSHGLG00100005904	UPF1	99	96.864	Heterocephalus_glaber_male
ENSHGLG00000010900	UPF1	100	90.539	ENSHCOG00000008918	upf1	100	92.632	Hippocampus_comes
ENSHGLG00000010900	UPF1	100	92.403	ENSIPUG00000005108	UPF1	100	92.756	Ictalurus_punctatus
ENSHGLG00000010900	UPF1	100	98.849	ENSSTOG00000009196	UPF1	100	98.849	Ictidomys_tridecemlineatus
ENSHGLG00000010900	UPF1	100	97.963	ENSJJAG00000023151	Upf1	100	97.963	Jaculus_jaculus
ENSHGLG00000010900	UPF1	100	91.519	ENSKMAG00000004962	upf1	100	91.431	Kryptolebias_marmoratus
ENSHGLG00000010900	UPF1	100	91.254	ENSLBEG00000027848	-	100	91.254	Labrus_bergylta
ENSHGLG00000010900	UPF1	100	88.569	ENSLBEG00000014862	upf1	100	89.442	Labrus_bergylta
ENSHGLG00000010900	UPF1	62	97.131	ENSLACG00000008482	UPF1	100	97.131	Latimeria_chalumnae
ENSHGLG00000010900	UPF1	100	93.811	ENSLOCG00000002072	upf1	100	93.811	Lepisosteus_oculatus
ENSHGLG00000010900	UPF1	100	98.230	ENSLAFG00000014963	UPF1	100	98.230	Loxodonta_africana
ENSHGLG00000010900	UPF1	100	99.114	ENSMFAG00000037748	UPF1	100	99.114	Macaca_fascicularis
ENSHGLG00000010900	UPF1	100	99.114	ENSMMUG00000023286	UPF1	100	99.114	Macaca_mulatta
ENSHGLG00000010900	UPF1	100	99.114	ENSMNEG00000000046	UPF1	100	99.114	Macaca_nemestrina
ENSHGLG00000010900	UPF1	93	99.335	ENSMLEG00000028404	UPF1	100	99.335	Mandrillus_leucophaeus
ENSHGLG00000010900	UPF1	100	88.850	ENSMAMG00000006229	upf1	100	89.634	Mastacembelus_armatus
ENSHGLG00000010900	UPF1	100	90.724	ENSMAMG00000006231	-	100	90.989	Mastacembelus_armatus
ENSHGLG00000010900	UPF1	100	91.335	ENSMZEG00005016386	-	100	91.247	Maylandia_zebra
ENSHGLG00000010900	UPF1	100	88.947	ENSMZEG00005003489	upf1	100	89.851	Maylandia_zebra
ENSHGLG00000010900	UPF1	93	97.433	ENSMGAG00000004745	UPF1	100	97.433	Meleagris_gallopavo
ENSHGLG00000010900	UPF1	95	97.217	ENSMAUG00000011398	Upf1	97	97.217	Mesocricetus_auratus
ENSHGLG00000010900	UPF1	100	98.317	ENSMICG00000001659	UPF1	100	98.317	Microcebus_murinus
ENSHGLG00000010900	UPF1	100	98.229	ENSMOCG00000005699	Upf1	100	98.229	Microtus_ochrogaster
ENSHGLG00000010900	UPF1	100	89.646	ENSMMOG00000007881	upf1	100	89.920	Mola_mola
ENSHGLG00000010900	UPF1	93	91.263	ENSMMOG00000007537	-	99	91.358	Mola_mola
ENSHGLG00000010900	UPF1	100	97.617	ENSMODG00000003689	UPF1	100	97.617	Monodelphis_domestica
ENSHGLG00000010900	UPF1	100	89.912	ENSMALG00000000144	upf1	100	90.000	Monopterus_albus
ENSHGLG00000010900	UPF1	100	90.150	ENSMALG00000018100	-	100	90.150	Monopterus_albus
ENSHGLG00000010900	UPF1	100	98.140	MGP_CAROLIEiJ_G0031142	Upf1	100	98.140	Mus_caroli
ENSHGLG00000010900	UPF1	100	98.140	ENSMUSG00000058301	Upf1	100	98.140	Mus_musculus
ENSHGLG00000010900	UPF1	100	98.140	MGP_PahariEiJ_G0021607	Upf1	100	98.140	Mus_pahari
ENSHGLG00000010900	UPF1	100	98.140	MGP_SPRETEiJ_G0032260	Upf1	100	98.140	Mus_spretus
ENSHGLG00000010900	UPF1	100	98.142	ENSMPUG00000015516	UPF1	100	98.142	Mustela_putorius_furo
ENSHGLG00000010900	UPF1	99	97.869	ENSMLUG00000012122	UPF1	99	97.869	Myotis_lucifugus
ENSHGLG00000010900	UPF1	100	98.406	ENSNGAG00000024107	Upf1	100	98.406	Nannospalax_galili
ENSHGLG00000010900	UPF1	100	88.584	ENSNBRG00000000670	upf1	100	88.546	Neolamprologus_brichardi
ENSHGLG00000010900	UPF1	100	89.071	ENSNBRG00000022069	-	100	92.596	Neolamprologus_brichardi
ENSHGLG00000010900	UPF1	93	93.536	ENSNLEG00000006062	UPF1	100	93.536	Nomascus_leucogenys
ENSHGLG00000010900	UPF1	83	93.333	ENSMEUG00000014146	-	83	93.333	Notamacropus_eugenii
ENSHGLG00000010900	UPF1	93	90.399	ENSOPRG00000014018	UPF1	100	90.399	Ochotona_princeps
ENSHGLG00000010900	UPF1	100	97.874	ENSODEG00000012426	UPF1	100	97.874	Octodon_degus
ENSHGLG00000010900	UPF1	100	91.424	ENSONIG00000012729	-	100	91.335	Oreochromis_niloticus
ENSHGLG00000010900	UPF1	100	89.208	ENSONIG00000010452	upf1	100	90.114	Oreochromis_niloticus
ENSHGLG00000010900	UPF1	100	96.908	ENSOANG00000004568	UPF1	100	96.908	Ornithorhynchus_anatinus
ENSHGLG00000010900	UPF1	100	91.254	ENSORLG00000008453	upf1	100	91.254	Oryzias_latipes
ENSHGLG00000010900	UPF1	100	91.086	ENSORLG00020014758	upf1	100	91.086	Oryzias_latipes_hni
ENSHGLG00000010900	UPF1	100	91.086	ENSORLG00015010165	upf1	100	91.086	Oryzias_latipes_hsok
ENSHGLG00000010900	UPF1	100	91.254	ENSOMEG00000003665	upf1	100	91.166	Oryzias_melastigma
ENSHGLG00000010900	UPF1	100	98.229	ENSOGAG00000012866	UPF1	100	98.229	Otolemur_garnettii
ENSHGLG00000010900	UPF1	96	96.688	ENSOARG00000010739	UPF1	100	96.780	Ovis_aries
ENSHGLG00000010900	UPF1	95	98.411	ENSPPAG00000043884	UPF1	97	98.411	Pan_paniscus
ENSHGLG00000010900	UPF1	100	99.027	ENSPPRG00000023470	UPF1	100	99.027	Panthera_pardus
ENSHGLG00000010900	UPF1	93	96.099	ENSPTIG00000010159	UPF1	99	96.099	Panthera_tigris_altaica
ENSHGLG00000010900	UPF1	100	99.114	ENSPTRG00000010721	UPF1	100	99.114	Pan_troglodytes
ENSHGLG00000010900	UPF1	100	99.114	ENSPANG00000008847	UPF1	100	99.114	Papio_anubis
ENSHGLG00000010900	UPF1	94	91.760	ENSPKIG00000006069	upf1	99	91.667	Paramormyrops_kingsleyae
ENSHGLG00000010900	UPF1	68	97.516	ENSPSIG00000009491	UPF1	100	97.516	Pelodiscus_sinensis
ENSHGLG00000010900	UPF1	100	88.018	ENSPMGG00000017327	upf1	100	88.127	Periophthalmus_magnuspinnatus
ENSHGLG00000010900	UPF1	100	98.317	ENSPEMG00000001085	Upf1	100	98.317	Peromyscus_maniculatus_bairdii
ENSHGLG00000010900	UPF1	100	86.649	ENSPMAG00000001206	upf1	100	86.079	Petromyzon_marinus
ENSHGLG00000010900	UPF1	100	97.168	ENSPCIG00000006156	UPF1	100	97.168	Phascolarctos_cinereus
ENSHGLG00000010900	UPF1	100	88.694	ENSPLAG00000018155	-	100	88.606	Poecilia_latipinna
ENSHGLG00000010900	UPF1	100	91.158	ENSPLAG00000016232	-	100	91.070	Poecilia_latipinna
ENSHGLG00000010900	UPF1	100	91.247	ENSPMEG00000016319	-	100	91.158	Poecilia_mexicana
ENSHGLG00000010900	UPF1	100	89.056	ENSPMEG00000011443	-	100	88.967	Poecilia_mexicana
ENSHGLG00000010900	UPF1	100	90.981	ENSPREG00000011247	-	100	90.893	Poecilia_reticulata
ENSHGLG00000010900	UPF1	100	88.986	ENSPREG00000009940	upf1	100	88.986	Poecilia_reticulata
ENSHGLG00000010900	UPF1	100	94.243	ENSPPYG00000009752	UPF1	100	94.243	Pongo_abelii
ENSHGLG00000010900	UPF1	77	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSHGLG00000010900	UPF1	100	98.937	ENSPCOG00000023813	UPF1	100	98.937	Propithecus_coquereli
ENSHGLG00000010900	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSHGLG00000010900	UPF1	100	88.947	ENSPNYG00000003694	upf1	100	89.851	Pundamilia_nyererei
ENSHGLG00000010900	UPF1	100	91.335	ENSPNYG00000016731	-	100	91.247	Pundamilia_nyererei
ENSHGLG00000010900	UPF1	100	92.138	ENSPNAG00000025614	upf1	100	92.580	Pygocentrus_nattereri
ENSHGLG00000010900	UPF1	100	98.229	ENSRNOG00000020134	Upf1	100	98.229	Rattus_norvegicus
ENSHGLG00000010900	UPF1	95	96.075	ENSRBIG00000013894	UPF1	98	97.835	Rhinopithecus_bieti
ENSHGLG00000010900	UPF1	95	98.411	ENSRROG00000040935	UPF1	99	98.411	Rhinopithecus_roxellana
ENSHGLG00000010900	UPF1	76	55.309	YMR080C	NAM7	86	55.309	Saccharomyces_cerevisiae
ENSHGLG00000010900	UPF1	96	97.412	ENSSBOG00000023632	UPF1	98	97.412	Saimiri_boliviensis_boliviensis
ENSHGLG00000010900	UPF1	93	98.386	ENSSHAG00000010499	UPF1	100	98.386	Sarcophilus_harrisii
ENSHGLG00000010900	UPF1	100	93.811	ENSSFOG00015021095	upf1	99	95.913	Scleropages_formosus
ENSHGLG00000010900	UPF1	100	91.431	ENSSMAG00000021018	-	100	91.431	Scophthalmus_maximus
ENSHGLG00000010900	UPF1	100	88.133	ENSSMAG00000005055	upf1	100	88.753	Scophthalmus_maximus
ENSHGLG00000010900	UPF1	100	89.111	ENSSDUG00000013320	upf1	100	89.895	Seriola_dumerili
ENSHGLG00000010900	UPF1	100	91.608	ENSSDUG00000009629	-	100	91.608	Seriola_dumerili
ENSHGLG00000010900	UPF1	100	89.895	ENSSLDG00000020868	upf1	100	90.263	Seriola_lalandi_dorsalis
ENSHGLG00000010900	UPF1	100	91.608	ENSSLDG00000006878	-	100	91.608	Seriola_lalandi_dorsalis
ENSHGLG00000010900	UPF1	100	95.841	ENSSPUG00000010538	UPF1	100	95.841	Sphenodon_punctatus
ENSHGLG00000010900	UPF1	100	88.230	ENSSPAG00000000003	upf1	100	88.183	Stegastes_partitus
ENSHGLG00000010900	UPF1	100	91.424	ENSSPAG00000011521	-	100	91.335	Stegastes_partitus
ENSHGLG00000010900	UPF1	100	98.584	ENSSSCG00000039301	UPF1	100	98.584	Sus_scrofa
ENSHGLG00000010900	UPF1	83	89.703	ENSTGUG00000001057	UPF1	100	95.428	Taeniopygia_guttata
ENSHGLG00000010900	UPF1	100	90.363	ENSTRUG00000005131	-	100	90.363	Takifugu_rubripes
ENSHGLG00000010900	UPF1	100	89.744	ENSTRUG00000000150	upf1	100	89.744	Takifugu_rubripes
ENSHGLG00000010900	UPF1	100	93.894	ENSTTRG00000011544	UPF1	100	93.363	Tursiops_truncatus
ENSHGLG00000010900	UPF1	100	98.053	ENSUAMG00000007093	UPF1	100	98.053	Ursus_americanus
ENSHGLG00000010900	UPF1	95	98.410	ENSUMAG00000006652	UPF1	99	98.410	Ursus_maritimus
ENSHGLG00000010900	UPF1	100	98.142	ENSVVUG00000007797	UPF1	100	98.142	Vulpes_vulpes
ENSHGLG00000010900	UPF1	100	82.026	ENSXETG00000013602	upf1	100	82.026	Xenopus_tropicalis
ENSHGLG00000010900	UPF1	92	93.570	ENSXCOG00000005764	-	100	93.570	Xiphophorus_couchianus
ENSHGLG00000010900	UPF1	97	88.940	ENSXCOG00000015275	-	96	88.940	Xiphophorus_couchianus
ENSHGLG00000010900	UPF1	100	89.213	ENSXMAG00000001703	-	100	89.125	Xiphophorus_maculatus
ENSHGLG00000010900	UPF1	100	91.070	ENSXMAG00000002540	-	100	90.981	Xiphophorus_maculatus