EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00000011646 (Gene tree)
Gene ID: -
Gene Symbol: VARS
Alias: VARS2
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Plus strand
Length: 11191 bases
Position: chrJH602067.1:24430920-24442110
Accession: 101701358
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000016251	tRNA-synt_1g	PF09334.11	5.8e-11	1	1
ENSHGLP00000016252	tRNA-synt_1g	PF09334.11	5.8e-11	1	1
ENSHGLP00000016251	Anticodon_1	PF08264.13	5.1e-33	1	1
ENSHGLP00000016252	Anticodon_1	PF08264.13	9.3e-28	1	1
ENSHGLP00000016251	tRNA-synt_1	PF00133.22	2.1e-200	1	1
ENSHGLP00000016252	tRNA-synt_1	PF00133.22	2.3e-200	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000016420	VARS-201	3792	XM_004846959	ENSHGLP00000016251	1263 (aa)	XP_004847016	-
ENSHGLT00000016421	VARS-202	3750	-	ENSHGLP00000016252	1250 (aa)	-	-

Gene Model

Click here to download ENSHGLG00000011646's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000011646's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00000011646	VARS	83	49.716	ENSHGLG00000012886	VARS2	94	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000011646	VARS	100	90.269	ENSG00000204394	VARS	100	94.253	Homo_sapiens
ENSHGLG00000011646	VARS	98	64.228	ENSAPOG00000020921	vars	99	64.228	Acanthochromis_polyacanthus
ENSHGLG00000011646	VARS	98	64.228	ENSAPOG00000020691	vars	99	64.228	Acanthochromis_polyacanthus
ENSHGLG00000011646	VARS	100	90.198	ENSAMEG00000006417	VARS	100	90.356	Ailuropoda_melanoleuca
ENSHGLG00000011646	VARS	100	65.067	ENSACIG00000013752	vars	100	65.067	Amphilophus_citrinellus
ENSHGLG00000011646	VARS	100	64.224	ENSAOCG00000002447	vars	100	63.465	Amphiprion_ocellaris
ENSHGLG00000011646	VARS	100	64.147	ENSAPEG00000010638	vars	99	64.147	Amphiprion_percula
ENSHGLG00000011646	VARS	100	63.137	ENSATEG00000020219	vars	100	63.830	Anabas_testudineus
ENSHGLG00000011646	VARS	90	70.191	ENSACAG00000029133	-	99	70.191	Anolis_carolinensis
ENSHGLG00000011646	VARS	100	90.348	ENSANAG00000015453	VARS	100	90.665	Aotus_nancymaae
ENSHGLG00000011646	VARS	100	64.386	ENSACLG00000025699	vars	97	64.386	Astatotilapia_calliptera
ENSHGLG00000011646	VARS	94	65.860	ENSAMXG00000017716	vars	95	65.860	Astyanax_mexicanus
ENSHGLG00000011646	VARS	100	90.190	ENSBTAG00000005631	VARS	100	90.506	Bos_taurus
ENSHGLG00000011646	VARS	100	90.111	ENSCJAG00000002604	VARS	100	90.427	Callithrix_jacchus
ENSHGLG00000011646	VARS	100	89.794	ENSCAFG00000000636	VARS	100	89.953	Canis_familiaris
ENSHGLG00000011646	VARS	94	90.456	ENSCAFG00020020790	VARS	96	90.625	Canis_lupus_dingo
ENSHGLG00000011646	VARS	100	90.348	ENSCHIG00000011008	VARS	100	90.665	Capra_hircus
ENSHGLG00000011646	VARS	100	90.823	ENSTSYG00000001567	VARS	100	91.139	Carlito_syrichta
ENSHGLG00000011646	VARS	91	90.225	ENSCAPG00000013736	VARS	99	90.138	Cavia_aperea
ENSHGLG00000011646	VARS	100	91.377	ENSCPOG00000000870	VARS	100	91.297	Cavia_porcellus
ENSHGLG00000011646	VARS	100	90.427	ENSCCAG00000035656	VARS	100	90.744	Cebus_capucinus
ENSHGLG00000011646	VARS	100	90.427	ENSCATG00000022394	VARS	100	90.744	Cercocebus_atys
ENSHGLG00000011646	VARS	90	88.140	ENSCLAG00000009470	VARS	95	88.055	Chinchilla_lanigera
ENSHGLG00000011646	VARS	100	90.427	ENSCSAG00000008784	VARS	100	90.744	Chlorocebus_sabaeus
ENSHGLG00000011646	VARS	78	72.718	ENSCPBG00000007943	VARS	96	73.101	Chrysemys_picta_bellii
ENSHGLG00000011646	VARS	100	90.585	ENSCANG00000033570	VARS	100	90.902	Colobus_angolensis_palliatus
ENSHGLG00000011646	VARS	100	89.953	ENSCGRG00001005686	Vars	100	90.585	Cricetulus_griseus_chok1gshd
ENSHGLG00000011646	VARS	92	84.673	ENSCGRG00000013352	Vars	78	85.343	Cricetulus_griseus_crigri
ENSHGLG00000011646	VARS	100	63.766	ENSCSEG00000019652	vars	100	63.528	Cynoglossus_semilaevis
ENSHGLG00000011646	VARS	100	65.008	ENSCVAG00000022398	vars	100	65.008	Cyprinodon_variegatus
ENSHGLG00000011646	VARS	100	64.514	ENSDARG00000044575	vars	100	64.747	Danio_rerio
ENSHGLG00000011646	VARS	83	90.622	ENSDORG00000016433	Vars	94	91.196	Dipodomys_ordii
ENSHGLG00000011646	VARS	68	85.118	ENSETEG00000003824	VARS	76	85.118	Echinops_telfairi
ENSHGLG00000011646	VARS	57	62.225	ENSEBUG00000004637	vars	100	62.500	Eptatretus_burgeri
ENSHGLG00000011646	VARS	50	70.962	ENSEBUG00000007086	vars	84	69.808	Eptatretus_burgeri
ENSHGLG00000011646	VARS	100	90.823	ENSEASG00005015673	VARS	100	91.139	Equus_asinus_asinus
ENSHGLG00000011646	VARS	100	90.593	ENSECAG00000014620	VARS	100	90.909	Equus_caballus
ENSHGLG00000011646	VARS	81	84.712	ENSEEUG00000004116	VARS	80	84.775	Erinaceus_europaeus
ENSHGLG00000011646	VARS	100	64.009	ENSELUG00000006550	vars	97	64.241	Esox_lucius
ENSHGLG00000011646	VARS	100	90.190	ENSFCAG00000004510	VARS	100	90.348	Felis_catus
ENSHGLG00000011646	VARS	82	92.784	ENSFDAG00000011401	VARS	100	92.577	Fukomys_damarensis
ENSHGLG00000011646	VARS	100	65.008	ENSFHEG00000010672	vars	100	65.319	Fundulus_heteroclitus
ENSHGLG00000011646	VARS	92	65.445	ENSGMOG00000014908	vars	97	65.445	Gadus_morhua
ENSHGLG00000011646	VARS	100	65.421	ENSGAFG00000021630	vars	100	65.421	Gambusia_affinis
ENSHGLG00000011646	VARS	92	65.743	ENSGACG00000009601	vars	98	65.388	Gasterosteus_aculeatus
ENSHGLG00000011646	VARS	50	63.810	ENSGAGG00000006508	-	91	63.333	Gopherus_agassizii
ENSHGLG00000011646	VARS	100	90.427	ENSGGOG00000011364	VARS	100	90.744	Gorilla_gorilla
ENSHGLG00000011646	VARS	100	64.386	ENSHBUG00000017151	vars	97	64.386	Haplochromis_burtoni
ENSHGLG00000011646	VARS	93	91.681	ENSHGLG00100018062	VARS	100	91.681	Heterocephalus_glaber_male
ENSHGLG00000011646	VARS	99	64.848	ENSHCOG00000012198	vars	99	64.848	Hippocampus_comes
ENSHGLG00000011646	VARS	100	64.047	ENSIPUG00000005218	vars	100	64.202	Ictalurus_punctatus
ENSHGLG00000011646	VARS	100	91.462	ENSSTOG00000013112	VARS	100	91.937	Ictidomys_tridecemlineatus
ENSHGLG00000011646	VARS	100	89.549	ENSJJAG00000019749	-	100	89.549	Jaculus_jaculus
ENSHGLG00000011646	VARS	100	70.863	ENSJJAG00000015343	-	100	71.259	Jaculus_jaculus
ENSHGLG00000011646	VARS	100	64.230	ENSKMAG00000009455	vars	100	64.072	Kryptolebias_marmoratus
ENSHGLG00000011646	VARS	100	62.609	ENSLBEG00000010341	vars	100	63.478	Labrus_bergylta
ENSHGLG00000011646	VARS	94	62.777	ENSLACG00000015232	VARS	99	62.859	Latimeria_chalumnae
ENSHGLG00000011646	VARS	100	66.145	ENSLOCG00000004240	vars	100	66.145	Lepisosteus_oculatus
ENSHGLG00000011646	VARS	100	90.024	ENSLAFG00000023090	VARS	100	90.024	Loxodonta_africana
ENSHGLG00000011646	VARS	100	90.427	ENSMFAG00000001032	VARS	100	90.744	Macaca_fascicularis
ENSHGLG00000011646	VARS	100	90.427	ENSMMUG00000006828	VARS	100	90.744	Macaca_mulatta
ENSHGLG00000011646	VARS	100	90.585	ENSMNEG00000042072	VARS	100	90.902	Macaca_nemestrina
ENSHGLG00000011646	VARS	100	90.269	ENSMLEG00000039307	VARS	100	90.585	Mandrillus_leucophaeus
ENSHGLG00000011646	VARS	100	64.325	ENSMAMG00000003949	vars	100	64.431	Mastacembelus_armatus
ENSHGLG00000011646	VARS	100	64.386	ENSMZEG00005018327	vars	100	63.744	Maylandia_zebra
ENSHGLG00000011646	VARS	100	90.665	ENSMAUG00000006715	Vars	100	91.297	Mesocricetus_auratus
ENSHGLG00000011646	VARS	100	90.981	ENSMICG00000003548	VARS	100	91.045	Microcebus_murinus
ENSHGLG00000011646	VARS	100	88.282	ENSMOCG00000015404	Vars	100	88.282	Microtus_ochrogaster
ENSHGLG00000011646	VARS	100	63.887	ENSMMOG00000015801	vars	100	63.887	Mola_mola
ENSHGLG00000011646	VARS	100	84.335	ENSMODG00000015204	-	100	84.335	Monodelphis_domestica
ENSHGLG00000011646	VARS	99	64.569	ENSMALG00000022532	vars	99	64.569	Monopterus_albus
ENSHGLG00000011646	VARS	100	91.686	MGP_CAROLIEiJ_G0021491	Vars	100	91.686	Mus_caroli
ENSHGLG00000011646	VARS	100	91.766	ENSMUSG00000007029	Vars	100	91.766	Mus_musculus
ENSHGLG00000011646	VARS	100	91.370	MGP_PahariEiJ_G0020486	Vars	100	91.370	Mus_pahari
ENSHGLG00000011646	VARS	100	91.845	MGP_SPRETEiJ_G0022396	Vars	100	91.845	Mus_spretus
ENSHGLG00000011646	VARS	100	90.190	ENSMPUG00000010821	VARS	100	90.348	Mustela_putorius_furo
ENSHGLG00000011646	VARS	78	90.789	ENSMLUG00000013126	VARS	100	90.789	Myotis_lucifugus
ENSHGLG00000011646	VARS	100	90.499	ENSNGAG00000012151	Vars	100	90.499	Nannospalax_galili
ENSHGLG00000011646	VARS	100	64.075	ENSNBRG00000020520	vars	100	64.075	Neolamprologus_brichardi
ENSHGLG00000011646	VARS	100	89.953	ENSNLEG00000006351	VARS	100	90.269	Nomascus_leucogenys
ENSHGLG00000011646	VARS	100	81.092	ENSMEUG00000011378	VARS	100	81.487	Notamacropus_eugenii
ENSHGLG00000011646	VARS	100	90.585	ENSOPRG00000003607	VARS	100	90.902	Ochotona_princeps
ENSHGLG00000011646	VARS	100	91.845	ENSODEG00000017681	VARS	100	91.845	Octodon_degus
ENSHGLG00000011646	VARS	100	64.784	ENSONIG00000013064	vars	99	67.624	Oreochromis_niloticus
ENSHGLG00000011646	VARS	77	77.527	ENSOANG00000005400	VARS	98	77.527	Ornithorhynchus_anatinus
ENSHGLG00000011646	VARS	100	88.775	ENSOCUG00000022463	VARS	100	87.736	Oryctolagus_cuniculus
ENSHGLG00000011646	VARS	100	64.561	ENSORLG00000013063	vars	100	64.484	Oryzias_latipes
ENSHGLG00000011646	VARS	100	65.089	ENSORLG00020003504	vars	100	65.012	Oryzias_latipes_hni
ENSHGLG00000011646	VARS	100	64.833	ENSORLG00015009001	vars	100	64.988	Oryzias_latipes_hsok
ENSHGLG00000011646	VARS	100	64.984	ENSOMEG00000015016	vars	100	64.984	Oryzias_melastigma
ENSHGLG00000011646	VARS	100	89.794	ENSOGAG00000007515	VARS	100	90.111	Otolemur_garnettii
ENSHGLG00000011646	VARS	100	90.665	ENSPPAG00000034012	VARS	100	90.981	Pan_paniscus
ENSHGLG00000011646	VARS	100	90.111	ENSPPRG00000014855	VARS	100	90.269	Panthera_pardus
ENSHGLG00000011646	VARS	85	90.335	ENSPTIG00000010462	VARS	95	90.568	Panthera_tigris_altaica
ENSHGLG00000011646	VARS	100	90.585	ENSPTRG00000017985	VARS	100	90.902	Pan_troglodytes
ENSHGLG00000011646	VARS	100	88.722	ENSPANG00000014565	VARS	100	89.038	Papio_anubis
ENSHGLG00000011646	VARS	100	63.320	ENSPKIG00000016304	vars	100	63.320	Paramormyrops_kingsleyae
ENSHGLG00000011646	VARS	100	65.509	ENSPMGG00000023909	vars	100	65.509	Periophthalmus_magnuspinnatus
ENSHGLG00000011646	VARS	100	90.981	ENSPEMG00000006639	Vars	100	91.297	Peromyscus_maniculatus_bairdii
ENSHGLG00000011646	VARS	100	83.861	ENSPCIG00000018553	VARS	100	83.861	Phascolarctos_cinereus
ENSHGLG00000011646	VARS	100	65.265	ENSPFOG00000015690	vars	100	65.265	Poecilia_formosa
ENSHGLG00000011646	VARS	100	65.669	ENSPLAG00000009590	vars	100	65.591	Poecilia_latipinna
ENSHGLG00000011646	VARS	100	65.265	ENSPMEG00000004708	vars	100	65.265	Poecilia_mexicana
ENSHGLG00000011646	VARS	100	63.121	ENSPREG00000013264	vars	100	62.727	Poecilia_reticulata
ENSHGLG00000011646	VARS	100	88.766	ENSPPYG00000016460	VARS	100	89.082	Pongo_abelii
ENSHGLG00000011646	VARS	86	88.151	ENSPCAG00000013565	VARS	86	88.151	Procavia_capensis
ENSHGLG00000011646	VARS	100	90.514	ENSPCOG00000010942	VARS	100	90.830	Propithecus_coquereli
ENSHGLG00000011646	VARS	100	87.104	ENSPVAG00000012403	VARS	100	86.946	Pteropus_vampyrus
ENSHGLG00000011646	VARS	100	64.386	ENSPNYG00000022511	vars	100	64.386	Pundamilia_nyererei
ENSHGLG00000011646	VARS	100	64.779	ENSPNAG00000020962	vars	100	64.934	Pygocentrus_nattereri
ENSHGLG00000011646	VARS	100	91.377	ENSRNOG00000000867	Vars	100	91.139	Rattus_norvegicus
ENSHGLG00000011646	VARS	100	90.506	ENSRBIG00000041669	VARS	100	90.823	Rhinopithecus_bieti
ENSHGLG00000011646	VARS	100	90.506	ENSRROG00000045490	VARS	100	90.823	Rhinopithecus_roxellana
ENSHGLG00000011646	VARS	100	90.348	ENSSBOG00000035402	VARS	100	90.665	Saimiri_boliviensis_boliviensis
ENSHGLG00000011646	VARS	100	79.969	ENSSHAG00000006937	VARS	100	80.204	Sarcophilus_harrisii
ENSHGLG00000011646	VARS	100	64.114	ENSSFOG00015014272	vars	100	64.114	Scleropages_formosus
ENSHGLG00000011646	VARS	100	63.276	ENSSMAG00000009596	vars	99	63.354	Scophthalmus_maximus
ENSHGLG00000011646	VARS	100	63.820	ENSSDUG00000014177	vars	100	63.820	Seriola_dumerili
ENSHGLG00000011646	VARS	100	63.820	ENSSLDG00000025316	vars	100	63.898	Seriola_lalandi_dorsalis
ENSHGLG00000011646	VARS	100	64.536	ENSSPAG00000017068	vars	100	64.614	Stegastes_partitus
ENSHGLG00000011646	VARS	100	89.881	ENSSSCG00000038950	VARS	100	90.198	Sus_scrofa
ENSHGLG00000011646	VARS	82	64.093	ENSTRUG00000012307	vars	97	63.942	Takifugu_rubripes
ENSHGLG00000011646	VARS	100	64.863	ENSTNIG00000008011	vars	100	64.863	Tetraodon_nigroviridis
ENSHGLG00000011646	VARS	54	93.633	ENSTBEG00000004728	-	60	93.633	Tupaia_belangeri
ENSHGLG00000011646	VARS	100	83.228	ENSTTRG00000014128	VARS	100	83.228	Tursiops_truncatus
ENSHGLG00000011646	VARS	100	86.651	ENSUAMG00000010424	VARS	100	86.750	Ursus_americanus
ENSHGLG00000011646	VARS	93	90.952	ENSUMAG00000013486	VARS	98	91.111	Ursus_maritimus
ENSHGLG00000011646	VARS	100	90.198	ENSVVUG00000021323	VARS	100	90.277	Vulpes_vulpes
ENSHGLG00000011646	VARS	96	62.105	ENSXETG00000024076	vars	98	62.510	Xenopus_tropicalis
ENSHGLG00000011646	VARS	100	64.933	ENSXCOG00000019172	vars	100	64.933	Xiphophorus_couchianus
ENSHGLG00000011646	VARS	100	65.109	ENSXMAG00000010927	vars	100	65.109	Xiphophorus_maculatus