EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00000012017 (Gene tree)
Gene ID: -
Gene Symbol: CHD3
Alias: Mi-2a|Mi2-ALPHA|ZFH
Full Name: chromodomain-helicase-DNA-binding protein 3
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Plus strand
Length: 25805 bases
Position: chrJH602099.1:10469006-10494810
Accession: 101704396
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000016806	ResIII	PF04851.15	1.9e-08	1	1
ENSHGLP00000016805	ResIII	PF04851.15	1.9e-08	1	1
ENSHGLP00000016804	ResIII	PF04851.15	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000016975	CHD3-201	6232	XM_004857456	ENSHGLP00000016804	2050 (aa)	XP_012932236	-
ENSHGLT00000016976	CHD3-202	6051	XM_013076785	ENSHGLP00000016805	2016 (aa)	XP_012932239	-
ENSHGLT00000016977	CHD3-203	5964	-	ENSHGLP00000016806	1987 (aa)	-	-

Gene Model

Click here to download ENSHGLG00000012017's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000012017's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00000012017	CHD3	90	70.751	ENSHGLG00000003093	-	95	69.936
ENSHGLG00000012017	CHD3	95	68.094	ENSHGLG00000018184	CHD5	99	69.024

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000012017	CHD3	100	98.344	ENSG00000170004	CHD3	99	98.344	Homo_sapiens
ENSHGLG00000012017	CHD3	79	80.729	ENSAPOG00000005614	chd3	94	80.729	Acanthochromis_polyacanthus
ENSHGLG00000012017	CHD3	69	97.214	ENSAMEG00000003025	-	100	97.214	Ailuropoda_melanoleuca
ENSHGLG00000012017	CHD3	81	79.798	ENSACIG00000019671	chd3	99	87.791	Amphilophus_citrinellus
ENSHGLG00000012017	CHD3	88	81.100	ENSAOCG00000023784	chd3	97	81.389	Amphiprion_ocellaris
ENSHGLG00000012017	CHD3	88	80.412	ENSAPEG00000006341	chd3	96	76.656	Amphiprion_percula
ENSHGLG00000012017	CHD3	88	81.315	ENSATEG00000000848	chd3	95	82.105	Anabas_testudineus
ENSHGLG00000012017	CHD3	98	85.248	ENSACAG00000004276	CHD3	95	84.775	Anolis_carolinensis
ENSHGLG00000012017	CHD3	100	95.118	ENSANAG00000034323	CHD3	99	98.348	Aotus_nancymaae
ENSHGLG00000012017	CHD3	91	80.707	ENSACLG00000009222	chd3	99	74.660	Astatotilapia_calliptera
ENSHGLG00000012017	CHD3	100	97.613	ENSBTAG00000014377	CHD3	99	97.613	Bos_taurus
ENSHGLG00000012017	CHD3	100	98.390	ENSCJAG00000014766	CHD3	99	98.390	Callithrix_jacchus
ENSHGLG00000012017	CHD3	99	97.044	ENSCAFG00000016859	CHD3	99	97.044	Canis_familiaris
ENSHGLG00000012017	CHD3	94	97.762	ENSCAFG00020007422	CHD3	100	97.872	Canis_lupus_dingo
ENSHGLG00000012017	CHD3	99	98.018	ENSCHIG00000016737	CHD3	99	98.018	Capra_hircus
ENSHGLG00000012017	CHD3	99	97.247	ENSTSYG00000035658	CHD3	98	98.398	Carlito_syrichta
ENSHGLG00000012017	CHD3	99	95.681	ENSCAPG00000014864	CHD3	98	95.681	Cavia_aperea
ENSHGLG00000012017	CHD3	99	98.222	ENSCPOG00000022653	CHD3	98	98.222	Cavia_porcellus
ENSHGLG00000012017	CHD3	100	98.217	ENSCCAG00000034792	CHD3	99	98.217	Cebus_capucinus
ENSHGLG00000012017	CHD3	100	98.100	ENSCATG00000041717	CHD3	99	98.100	Cercocebus_atys
ENSHGLG00000012017	CHD3	99	99.085	ENSCLAG00000010523	CHD3	100	99.121	Chinchilla_lanigera
ENSHGLG00000012017	CHD3	99	98.069	ENSCSAG00000011122	CHD3	99	98.070	Chlorocebus_sabaeus
ENSHGLG00000012017	CHD3	90	83.352	ENSCPBG00000011966	CHD3	99	87.507	Chrysemys_picta_bellii
ENSHGLG00000012017	CHD3	99	97.247	ENSCANG00000037641	CHD3	98	98.295	Colobus_angolensis_palliatus
ENSHGLG00000012017	CHD3	99	97.205	ENSCGRG00001011306	Chd3	100	97.363	Cricetulus_griseus_chok1gshd
ENSHGLG00000012017	CHD3	93	98.529	ENSCGRG00000007878	Chd3	99	98.529	Cricetulus_griseus_crigri
ENSHGLG00000012017	CHD3	90	79.868	ENSCSEG00000004489	chd3	99	75.892	Cynoglossus_semilaevis
ENSHGLG00000012017	CHD3	87	82.072	ENSCVAG00000007293	chd3	95	82.996	Cyprinodon_variegatus
ENSHGLG00000012017	CHD3	88	82.274	ENSDARG00000021405	chd3	99	76.386	Danio_rerio
ENSHGLG00000012017	CHD3	99	83.308	ENSDNOG00000047846	CHD3	98	83.308	Dasypus_novemcinctus
ENSHGLG00000012017	CHD3	99	97.661	ENSDORG00000010713	Chd3	100	97.775	Dipodomys_ordii
ENSHGLG00000012017	CHD3	97	91.541	ENSETEG00000017733	CHD3	100	91.541	Echinops_telfairi
ENSHGLG00000012017	CHD3	53	78.033	ENSEBUG00000008310	chd3	99	70.267	Eptatretus_burgeri
ENSHGLG00000012017	CHD3	92	97.981	ENSEASG00005019360	CHD3	100	97.981	Equus_asinus_asinus
ENSHGLG00000012017	CHD3	92	98.036	ENSECAG00000010051	CHD3	100	98.036	Equus_caballus
ENSHGLG00000012017	CHD3	92	94.915	ENSEEUG00000015205	CHD3	93	94.915	Erinaceus_europaeus
ENSHGLG00000012017	CHD3	77	90.476	ENSELUG00000019499	chd3	99	90.476	Esox_lucius
ENSHGLG00000012017	CHD3	100	97.467	ENSFCAG00000009629	CHD3	99	97.467	Felis_catus
ENSHGLG00000012017	CHD3	99	96.919	ENSFDAG00000008220	CHD3	99	97.002	Fukomys_damarensis
ENSHGLG00000012017	CHD3	88	80.305	ENSGMOG00000013599	chd3	91	80.914	Gadus_morhua
ENSHGLG00000012017	CHD3	59	74.659	ENSGAFG00000004055	chd3	99	76.325	Gambusia_affinis
ENSHGLG00000012017	CHD3	98	70.740	ENSGACG00000019275	chd3	100	70.911	Gasterosteus_aculeatus
ENSHGLG00000012017	CHD3	75	85.695	ENSGAGG00000013164	CHD3	98	86.965	Gopherus_agassizii
ENSHGLG00000012017	CHD3	100	97.399	ENSGGOG00000013496	CHD3	98	98.450	Gorilla_gorilla
ENSHGLG00000012017	CHD3	88	93.913	ENSHGLG00100013902	CHD3	99	93.913	Heterocephalus_glaber_male
ENSHGLG00000012017	CHD3	94	72.068	ENSHCOG00000010170	chd3	96	72.681	Hippocampus_comes
ENSHGLG00000012017	CHD3	83	80.071	ENSIPUG00000003271	chd3	96	74.437	Ictalurus_punctatus
ENSHGLG00000012017	CHD3	99	98.122	ENSSTOG00000025907	CHD3	100	98.241	Ictidomys_tridecemlineatus
ENSHGLG00000012017	CHD3	99	97.204	ENSJJAG00000017633	Chd3	100	97.362	Jaculus_jaculus
ENSHGLG00000012017	CHD3	86	90.047	ENSKMAG00000019292	chd3	97	75.580	Kryptolebias_marmoratus
ENSHGLG00000012017	CHD3	89	75.986	ENSLBEG00000028485	chd3	93	75.986	Labrus_bergylta
ENSHGLG00000012017	CHD3	98	73.551	ENSLACG00000008031	CHD3	98	75.280	Latimeria_chalumnae
ENSHGLG00000012017	CHD3	97	76.884	ENSLOCG00000013965	chd3	97	77.667	Lepisosteus_oculatus
ENSHGLG00000012017	CHD3	95	93.959	ENSLAFG00000000572	CHD3	100	93.959	Loxodonta_africana
ENSHGLG00000012017	CHD3	99	97.297	ENSMFAG00000020113	CHD3	98	98.398	Macaca_fascicularis
ENSHGLG00000012017	CHD3	99	94.945	ENSMMUG00000022221	CHD3	99	95.245	Macaca_mulatta
ENSHGLG00000012017	CHD3	99	97.712	ENSMNEG00000001728	CHD3	99	97.597	Macaca_nemestrina
ENSHGLG00000012017	CHD3	99	97.297	ENSMLEG00000032249	CHD3	98	98.398	Mandrillus_leucophaeus
ENSHGLG00000012017	CHD3	85	75.775	ENSMAMG00000000564	chd3	99	77.170	Mastacembelus_armatus
ENSHGLG00000012017	CHD3	100	96.083	ENSMAUG00000013873	Chd3	99	96.083	Mesocricetus_auratus
ENSHGLG00000012017	CHD3	100	98.098	ENSMICG00000008741	CHD3	99	98.098	Microcebus_murinus
ENSHGLG00000012017	CHD3	99	97.454	ENSMOCG00000004848	Chd3	100	97.615	Microtus_ochrogaster
ENSHGLG00000012017	CHD3	95	74.035	ENSMMOG00000012699	chd3	99	74.066	Mola_mola
ENSHGLG00000012017	CHD3	92	92.475	ENSMODG00000007509	CHD3	100	94.222	Monodelphis_domestica
ENSHGLG00000012017	CHD3	100	96.830	MGP_CAROLIEiJ_G0016564	Chd3	100	97.243	Mus_caroli
ENSHGLG00000012017	CHD3	100	96.880	ENSMUSG00000018474	Chd3	99	97.349	Mus_musculus
ENSHGLG00000012017	CHD3	100	97.076	MGP_PahariEiJ_G0017695	Chd3	100	97.454	Mus_pahari
ENSHGLG00000012017	CHD3	100	96.929	MGP_SPRETEiJ_G0017400	Chd3	100	97.455	Mus_spretus
ENSHGLG00000012017	CHD3	86	97.841	ENSMPUG00000008861	CHD3	100	97.841	Mustela_putorius_furo
ENSHGLG00000012017	CHD3	99	97.056	ENSMLUG00000014643	-	98	97.056	Myotis_lucifugus
ENSHGLG00000012017	CHD3	99	97.473	ENSNGAG00000000773	Chd3	99	97.473	Nannospalax_galili
ENSHGLG00000012017	CHD3	85	75.000	ENSNBRG00000000636	chd3	97	76.250	Neolamprologus_brichardi
ENSHGLG00000012017	CHD3	98	94.589	ENSNLEG00000009770	CHD3	100	95.278	Nomascus_leucogenys
ENSHGLG00000012017	CHD3	85	90.934	ENSMEUG00000005852	CHD3	86	93.072	Notamacropus_eugenii
ENSHGLG00000012017	CHD3	94	96.263	ENSOPRG00000011069	CHD3	100	96.263	Ochotona_princeps
ENSHGLG00000012017	CHD3	99	98.081	ENSODEG00000017785	CHD3	99	98.577	Octodon_degus
ENSHGLG00000012017	CHD3	75	77.617	ENSONIG00000009292	chd3	100	74.808	Oreochromis_niloticus
ENSHGLG00000012017	CHD3	98	93.032	ENSOCUG00000029299	CHD3	100	92.933	Oryctolagus_cuniculus
ENSHGLG00000012017	CHD3	82	70.265	ENSORLG00000007107	chd3	93	72.034	Oryzias_latipes
ENSHGLG00000012017	CHD3	57	73.080	ENSORLG00020008387	chd3	95	73.522	Oryzias_latipes_hni
ENSHGLG00000012017	CHD3	70	80.071	ENSOMEG00000013691	chd3	99	78.056	Oryzias_melastigma
ENSHGLG00000012017	CHD3	99	97.967	ENSOGAG00000003216	CHD3	99	97.967	Otolemur_garnettii
ENSHGLG00000012017	CHD3	99	94.837	ENSOARG00000017855	CHD3	99	95.586	Ovis_aries
ENSHGLG00000012017	CHD3	100	95.217	ENSPPAG00000032886	CHD3	99	95.217	Pan_paniscus
ENSHGLG00000012017	CHD3	99	97.814	ENSPPRG00000000626	CHD3	100	97.430	Panthera_pardus
ENSHGLG00000012017	CHD3	100	98.441	ENSPTRG00000008714	CHD3	99	98.441	Pan_troglodytes
ENSHGLG00000012017	CHD3	100	96.590	ENSPANG00000023938	CHD3	99	97.297	Papio_anubis
ENSHGLG00000012017	CHD3	98	75.412	ENSPKIG00000006305	chd3	99	80.268	Paramormyrops_kingsleyae
ENSHGLG00000012017	CHD3	54	90.328	ENSPSIG00000010177	CHD3	98	90.602	Pelodiscus_sinensis
ENSHGLG00000012017	CHD3	99	96.670	ENSPEMG00000014262	Chd3	100	96.670	Peromyscus_maniculatus_bairdii
ENSHGLG00000012017	CHD3	99	92.673	ENSPCIG00000005442	CHD3	99	93.834	Phascolarctos_cinereus
ENSHGLG00000012017	CHD3	92	76.471	ENSPFOG00000012464	chd3	91	76.709	Poecilia_formosa
ENSHGLG00000012017	CHD3	87	83.401	ENSPLAG00000002887	chd3	96	83.401	Poecilia_latipinna
ENSHGLG00000012017	CHD3	53	81.141	ENSPMEG00000016725	chd3	94	72.987	Poecilia_mexicana
ENSHGLG00000012017	CHD3	90	84.133	ENSPREG00000011044	chd3	99	78.326	Poecilia_reticulata
ENSHGLG00000012017	CHD3	97	95.389	ENSPPYG00000007940	CHD3	98	95.389	Pongo_abelii
ENSHGLG00000012017	CHD3	95	97.575	ENSPCAG00000004350	CHD3	96	97.575	Procavia_capensis
ENSHGLG00000012017	CHD3	100	98.050	ENSPCOG00000020952	CHD3	100	97.611	Propithecus_coquereli
ENSHGLG00000012017	CHD3	86	97.108	ENSPVAG00000016344	CHD3	87	97.108	Pteropus_vampyrus
ENSHGLG00000012017	CHD3	92	78.066	ENSPNAG00000020393	chd3	98	79.749	Pygocentrus_nattereri
ENSHGLG00000012017	CHD3	92	96.678	ENSRNOG00000009722	Chd3	100	96.678	Rattus_norvegicus
ENSHGLG00000012017	CHD3	99	94.315	ENSRBIG00000033562	CHD3	99	94.717	Rhinopithecus_bieti
ENSHGLG00000012017	CHD3	99	96.285	ENSRROG00000029554	CHD3	98	98.398	Rhinopithecus_roxellana
ENSHGLG00000012017	CHD3	99	97.497	ENSSBOG00000020719	CHD3	99	98.252	Saimiri_boliviensis_boliviensis
ENSHGLG00000012017	CHD3	99	93.010	ENSSHAG00000014412	CHD3	100	94.704	Sarcophilus_harrisii
ENSHGLG00000012017	CHD3	87	79.743	ENSSFOG00015023123	chd3	98	75.844	Scleropages_formosus
ENSHGLG00000012017	CHD3	78	90.741	ENSSMAG00000006451	chd3	94	87.209	Scophthalmus_maximus
ENSHGLG00000012017	CHD3	55	72.619	ENSSDUG00000005792	chd3	95	73.260	Seriola_dumerili
ENSHGLG00000012017	CHD3	88	80.756	ENSSPAG00000013694	chd3	99	80.928	Stegastes_partitus
ENSHGLG00000012017	CHD3	99	97.816	ENSSSCG00000021363	CHD3	100	97.655	Sus_scrofa
ENSHGLG00000012017	CHD3	74	76.295	ENSTRUG00000014990	chd3	89	76.172	Takifugu_rubripes
ENSHGLG00000012017	CHD3	97	72.330	ENSTNIG00000012998	chd3	99	72.824	Tetraodon_nigroviridis
ENSHGLG00000012017	CHD3	63	97.619	ENSTBEG00000011454	-	71	97.619	Tupaia_belangeri
ENSHGLG00000012017	CHD3	98	98.352	ENSTTRG00000010295	CHD3	97	98.352	Tursiops_truncatus
ENSHGLG00000012017	CHD3	92	96.734	ENSUAMG00000005475	CHD3	99	96.734	Ursus_americanus
ENSHGLG00000012017	CHD3	55	100.000	ENSVPAG00000010794	-	62	100.000	Vicugna_pacos
ENSHGLG00000012017	CHD3	95	97.985	ENSVVUG00000028011	CHD3	99	97.762	Vulpes_vulpes
ENSHGLG00000012017	CHD3	98	72.335	ENSXETG00000012991	chd3	92	73.753	Xenopus_tropicalis
ENSHGLG00000012017	CHD3	51	82.751	ENSXCOG00000000809	chd3	96	82.976	Xiphophorus_couchianus
ENSHGLG00000012017	CHD3	80	86.127	ENSXMAG00000016035	chd3	99	86.127	Xiphophorus_maculatus