EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHGLG00000012882 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Minus strand
Length: 242971 bases
Position: chrJH602099.1:4726676-4969646
Accession: 101703882
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000017981	EST1	PF10374.9	1.3e-15	1	1
ENSHGLP00000017981	EST1_DNA_bind	PF10373.9	9.2e-60	1	1
ENSHGLP00000017982	EST1_DNA_bind	PF10373.9	4e-10	1	1
ENSHGLP00000017981	PIN_4	PF13638.6	2.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000018158	SMG6-201	9074	XM_004857167	ENSHGLP00000017981	1420 (aa)	XP_004857224	UPI00034F7DC3
ENSHGLT00000018159	SMG6-202	714	-	ENSHGLP00000017982	238 (aa)	-	-

Gene Model

Click here to download ENSHGLG00000012882's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000012882's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000012882	SMG6	100	91.274	ENSG00000070366	SMG6	100	97.456	Homo_sapiens
ENSHGLG00000012882	SMG6	91	56.332	ENSAPOG00000019448	smg6	74	54.595	Acanthochromis_polyacanthus
ENSHGLG00000012882	SMG6	100	91.696	ENSAMEG00000007632	SMG6	100	91.696	Ailuropoda_melanoleuca
ENSHGLG00000012882	SMG6	91	59.292	ENSACIG00000012997	smg6	98	49.544	Amphilophus_citrinellus
ENSHGLG00000012882	SMG6	91	55.895	ENSAOCG00000002630	smg6	77	53.759	Amphiprion_ocellaris
ENSHGLG00000012882	SMG6	91	56.332	ENSAPEG00000019101	smg6	77	53.910	Amphiprion_percula
ENSHGLG00000012882	SMG6	84	60.377	ENSATEG00000006483	smg6	75	54.056	Anabas_testudineus
ENSHGLG00000012882	SMG6	87	75.845	ENSACAG00000011783	SMG6	99	57.345	Anolis_carolinensis
ENSHGLG00000012882	SMG6	100	91.696	ENSANAG00000035760	SMG6	100	91.696	Aotus_nancymaae
ENSHGLG00000012882	SMG6	84	59.434	ENSACLG00000005288	smg6	86	52.055	Astatotilapia_calliptera
ENSHGLG00000012882	SMG6	84	61.058	ENSAMXG00000017326	smg6	99	50.208	Astyanax_mexicanus
ENSHGLG00000012882	SMG6	100	91.766	ENSBTAG00000000267	SMG6	100	91.766	Bos_taurus
ENSHGLG00000012882	SMG6	100	91.766	ENSCJAG00000001820	SMG6	100	91.766	Callithrix_jacchus
ENSHGLG00000012882	SMG6	100	91.626	ENSCAFG00000019260	SMG6	100	91.626	Canis_familiaris
ENSHGLG00000012882	SMG6	100	91.626	ENSCAFG00020009770	SMG6	100	91.626	Canis_lupus_dingo
ENSHGLG00000012882	SMG6	100	91.555	ENSCHIG00000021998	SMG6	100	91.555	Capra_hircus
ENSHGLG00000012882	SMG6	100	91.977	ENSTSYG00000003406	SMG6	100	97.260	Carlito_syrichta
ENSHGLG00000012882	SMG6	98	79.598	ENSCAPG00000016197	SMG6	99	84.965	Cavia_aperea
ENSHGLG00000012882	SMG6	99	95.359	ENSCPOG00000014878	SMG6	99	95.359	Cavia_porcellus
ENSHGLG00000012882	SMG6	100	91.626	ENSCCAG00000035801	SMG6	100	91.626	Cebus_capucinus
ENSHGLG00000012882	SMG6	100	91.344	ENSCATG00000031956	SMG6	100	91.344	Cercocebus_atys
ENSHGLG00000012882	SMG6	100	97.059	ENSCLAG00000006748	SMG6	100	97.059	Chinchilla_lanigera
ENSHGLG00000012882	SMG6	100	91.837	ENSCSAG00000013800	SMG6	100	91.837	Chlorocebus_sabaeus
ENSHGLG00000012882	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSHGLG00000012882	SMG6	94	82.960	ENSCPBG00000020369	SMG6	100	72.450	Chrysemys_picta_bellii
ENSHGLG00000012882	SMG6	68	34.104	ENSCING00000010099	-	99	35.429	Ciona_intestinalis
ENSHGLG00000012882	SMG6	98	91.733	ENSCANG00000031764	SMG6	100	96.673	Colobus_angolensis_palliatus
ENSHGLG00000012882	SMG6	59	85.554	ENSCGRG00001019595	Smg6	100	87.324	Cricetulus_griseus_chok1gshd
ENSHGLG00000012882	SMG6	98	84.604	ENSCGRG00000007782	Smg6	100	84.748	Cricetulus_griseus_crigri
ENSHGLG00000012882	SMG6	89	58.744	ENSCSEG00000012757	smg6	78	54.769	Cynoglossus_semilaevis
ENSHGLG00000012882	SMG6	90	56.332	ENSCVAG00000012789	smg6	86	53.276	Cyprinodon_variegatus
ENSHGLG00000012882	SMG6	98	54.773	ENSDARG00000100481	smg6	90	55.651	Danio_rerio
ENSHGLG00000012882	SMG6	100	91.344	ENSDNOG00000048283	SMG6	100	91.344	Dasypus_novemcinctus
ENSHGLG00000012882	SMG6	96	95.197	ENSDORG00000016614	Smg6	94	97.748	Dipodomys_ordii
ENSHGLG00000012882	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSHGLG00000012882	SMG6	82	53.030	ENSEBUG00000005059	smg6	73	48.835	Eptatretus_burgeri
ENSHGLG00000012882	SMG6	99	92.530	ENSEASG00005009318	SMG6	99	92.530	Equus_asinus_asinus
ENSHGLG00000012882	SMG6	99	92.248	ENSECAG00000006519	SMG6	99	92.248	Equus_caballus
ENSHGLG00000012882	SMG6	100	80.788	ENSEEUG00000003493	SMG6	100	80.788	Erinaceus_europaeus
ENSHGLG00000012882	SMG6	84	61.905	ENSELUG00000005934	smg6	69	55.030	Esox_lucius
ENSHGLG00000012882	SMG6	100	92.681	ENSFCAG00000028817	SMG6	100	92.681	Felis_catus
ENSHGLG00000012882	SMG6	94	82.063	ENSFALG00000006538	SMG6	100	71.256	Ficedula_albicollis
ENSHGLG00000012882	SMG6	100	96.639	ENSFDAG00000015106	SMG6	100	96.639	Fukomys_damarensis
ENSHGLG00000012882	SMG6	94	53.110	ENSFHEG00000013282	smg6	86	53.037	Fundulus_heteroclitus
ENSHGLG00000012882	SMG6	83	56.938	ENSGMOG00000019077	smg6	58	68.692	Gadus_morhua
ENSHGLG00000012882	SMG6	94	82.511	ENSGALG00000003108	SMG6	98	71.044	Gallus_gallus
ENSHGLG00000012882	SMG6	84	58.216	ENSGAFG00000000379	smg6	74	53.750	Gambusia_affinis
ENSHGLG00000012882	SMG6	93	54.772	ENSGACG00000020521	smg6	99	53.648	Gasterosteus_aculeatus
ENSHGLG00000012882	SMG6	94	82.063	ENSGAGG00000025617	SMG6	100	71.824	Gopherus_agassizii
ENSHGLG00000012882	SMG6	100	92.118	ENSGGOG00000017156	SMG6	100	92.118	Gorilla_gorilla
ENSHGLG00000012882	SMG6	84	59.434	ENSHBUG00000021311	smg6	80	52.540	Haplochromis_burtoni
ENSHGLG00000012882	SMG6	100	100.000	ENSHGLG00100017815	SMG6	100	100.000	Heterocephalus_glaber_male
ENSHGLG00000012882	SMG6	86	60.648	ENSHCOG00000008761	smg6	96	53.513	Hippocampus_comes
ENSHGLG00000012882	SMG6	82	63.000	ENSIPUG00000012493	smg6	76	54.567	Ictalurus_punctatus
ENSHGLG00000012882	SMG6	100	97.059	ENSSTOG00000028127	SMG6	100	97.059	Ictidomys_tridecemlineatus
ENSHGLG00000012882	SMG6	79	88.246	ENSJJAG00000015367	Smg6	95	86.332	Jaculus_jaculus
ENSHGLG00000012882	SMG6	98	54.878	ENSKMAG00000000279	smg6	75	54.667	Kryptolebias_marmoratus
ENSHGLG00000012882	SMG6	88	56.306	ENSLBEG00000002184	smg6	75	53.328	Labrus_bergylta
ENSHGLG00000012882	SMG6	94	79.464	ENSLACG00000003276	SMG6	100	80.000	Latimeria_chalumnae
ENSHGLG00000012882	SMG6	55	56.174	ENSLACG00000000806	-	98	57.888	Latimeria_chalumnae
ENSHGLG00000012882	SMG6	94	66.372	ENSLOCG00000006448	smg6	86	59.710	Lepisosteus_oculatus
ENSHGLG00000012882	SMG6	100	91.696	ENSLAFG00000001261	SMG6	100	91.696	Loxodonta_africana
ENSHGLG00000012882	SMG6	100	91.977	ENSMFAG00000003394	SMG6	100	91.977	Macaca_fascicularis
ENSHGLG00000012882	SMG6	100	91.907	ENSMMUG00000023161	SMG6	100	91.907	Macaca_mulatta
ENSHGLG00000012882	SMG6	95	93.363	ENSMNEG00000044592	SMG6	100	87.298	Macaca_nemestrina
ENSHGLG00000012882	SMG6	93	96.805	ENSMLEG00000029353	SMG6	100	96.805	Mandrillus_leucophaeus
ENSHGLG00000012882	SMG6	84	61.429	ENSMAMG00000020119	smg6	80	54.824	Mastacembelus_armatus
ENSHGLG00000012882	SMG6	84	59.434	ENSMZEG00005024736	smg6	80	52.436	Maylandia_zebra
ENSHGLG00000012882	SMG6	74	64.789	ENSMGAG00000005401	-	99	64.789	Meleagris_gallopavo
ENSHGLG00000012882	SMG6	52	90.244	ENSMGAG00000017200	-	100	85.286	Meleagris_gallopavo
ENSHGLG00000012882	SMG6	96	93.886	ENSMAUG00000017203	-	99	93.886	Mesocricetus_auratus
ENSHGLG00000012882	SMG6	100	93.666	ENSMICG00000012913	SMG6	100	93.666	Microcebus_murinus
ENSHGLG00000012882	SMG6	99	92.797	ENSMOCG00000019924	-	99	92.797	Microtus_ochrogaster
ENSHGLG00000012882	SMG6	100	46.824	ENSMMOG00000010883	smg6	100	47.910	Mola_mola
ENSHGLG00000012882	SMG6	96	91.266	ENSMODG00000010622	SMG6	100	84.902	Monodelphis_domestica
ENSHGLG00000012882	SMG6	81	46.667	ENSMODG00000024395	-	99	40.509	Monodelphis_domestica
ENSHGLG00000012882	SMG6	73	50.000	ENSMODG00000024463	-	99	41.487	Monodelphis_domestica
ENSHGLG00000012882	SMG6	73	49.432	ENSMODG00000024460	-	99	41.096	Monodelphis_domestica
ENSHGLG00000012882	SMG6	73	48.864	ENSMODG00000024410	-	99	41.096	Monodelphis_domestica
ENSHGLG00000012882	SMG6	84	57.820	ENSMALG00000001106	smg6	74	54.713	Monopterus_albus
ENSHGLG00000012882	SMG6	100	93.277	MGP_CAROLIEiJ_G0016729	Smg6	100	93.277	Mus_caroli
ENSHGLG00000012882	SMG6	100	93.277	ENSMUSG00000038290	Smg6	100	93.277	Mus_musculus
ENSHGLG00000012882	SMG6	100	93.697	MGP_PahariEiJ_G0017866	Smg6	100	93.697	Mus_pahari
ENSHGLG00000012882	SMG6	100	93.277	MGP_SPRETEiJ_G0017572	Smg6	100	93.277	Mus_spretus
ENSHGLG00000012882	SMG6	100	91.837	ENSMPUG00000013046	SMG6	100	91.837	Mustela_putorius_furo
ENSHGLG00000012882	SMG6	100	91.907	ENSMLUG00000005739	SMG6	100	91.907	Myotis_lucifugus
ENSHGLG00000012882	SMG6	100	93.697	ENSNGAG00000007287	Smg6	100	93.697	Nannospalax_galili
ENSHGLG00000012882	SMG6	84	61.165	ENSNBRG00000009511	smg6	87	51.672	Neolamprologus_brichardi
ENSHGLG00000012882	SMG6	98	91.404	ENSNLEG00000017171	SMG6	100	97.260	Nomascus_leucogenys
ENSHGLG00000012882	SMG6	96	91.266	ENSMEUG00000015804	SMG6	100	81.133	Notamacropus_eugenii
ENSHGLG00000012882	SMG6	71	90.000	ENSOPRG00000000579	SMG6	85	98.421	Ochotona_princeps
ENSHGLG00000012882	SMG6	96	94.783	ENSODEG00000008038	SMG6	100	87.843	Octodon_degus
ENSHGLG00000012882	SMG6	100	50.331	ENSONIG00000005594	smg6	100	51.132	Oreochromis_niloticus
ENSHGLG00000012882	SMG6	100	92.340	ENSOCUG00000013018	SMG6	100	92.551	Oryctolagus_cuniculus
ENSHGLG00000012882	SMG6	82	59.330	ENSORLG00000003317	smg6	74	54.631	Oryzias_latipes
ENSHGLG00000012882	SMG6	82	58.852	ENSORLG00020015343	smg6	74	54.245	Oryzias_latipes_hni
ENSHGLG00000012882	SMG6	82	59.330	ENSORLG00015020454	smg6	74	54.510	Oryzias_latipes_hsok
ENSHGLG00000012882	SMG6	82	59.330	ENSOMEG00000010838	smg6	79	52.822	Oryzias_melastigma
ENSHGLG00000012882	SMG6	100	92.827	ENSOGAG00000004483	SMG6	100	92.827	Otolemur_garnettii
ENSHGLG00000012882	SMG6	100	89.803	ENSOARG00000015076	SMG6	100	91.348	Ovis_aries
ENSHGLG00000012882	SMG6	100	92.118	ENSPPAG00000043296	SMG6	100	92.118	Pan_paniscus
ENSHGLG00000012882	SMG6	100	92.892	ENSPPRG00000014581	SMG6	100	92.892	Panthera_pardus
ENSHGLG00000012882	SMG6	98	92.934	ENSPTIG00000008925	SMG6	100	97.847	Panthera_tigris_altaica
ENSHGLG00000012882	SMG6	100	92.048	ENSPTRG00000008544	SMG6	100	97.456	Pan_troglodytes
ENSHGLG00000012882	SMG6	100	91.766	ENSPANG00000024588	SMG6	100	91.766	Papio_anubis
ENSHGLG00000012882	SMG6	94	79.372	ENSPSIG00000006660	SMG6	96	70.180	Pelodiscus_sinensis
ENSHGLG00000012882	SMG6	95	62.267	ENSPMGG00000000844	smg6	100	62.584	Periophthalmus_magnuspinnatus
ENSHGLG00000012882	SMG6	100	91.626	ENSPEMG00000020707	Smg6	98	95.197	Peromyscus_maniculatus_bairdii
ENSHGLG00000012882	SMG6	100	50.907	ENSPFOG00000012035	smg6	100	50.635	Poecilia_formosa
ENSHGLG00000012882	SMG6	82	60.577	ENSPLAG00000017660	smg6	74	53.527	Poecilia_latipinna
ENSHGLG00000012882	SMG6	82	61.538	ENSPMEG00000000258	smg6	74	53.840	Poecilia_mexicana
ENSHGLG00000012882	SMG6	89	57.522	ENSPREG00000010066	smg6	74	54.075	Poecilia_reticulata
ENSHGLG00000012882	SMG6	100	86.657	ENSPPYG00000007790	SMG6	100	86.657	Pongo_abelii
ENSHGLG00000012882	SMG6	100	87.333	ENSPCAG00000000552	SMG6	100	87.333	Procavia_capensis
ENSHGLG00000012882	SMG6	100	93.174	ENSPCOG00000020925	SMG6	100	93.174	Propithecus_coquereli
ENSHGLG00000012882	SMG6	95	92.920	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSHGLG00000012882	SMG6	84	60.488	ENSPNYG00000024151	smg6	86	53.684	Pundamilia_nyererei
ENSHGLG00000012882	SMG6	93	58.621	ENSPNAG00000015480	smg6	90	47.326	Pygocentrus_nattereri
ENSHGLG00000012882	SMG6	100	90.992	ENSRNOG00000003041	Smg6	100	90.992	Rattus_norvegicus
ENSHGLG00000012882	SMG6	100	91.837	ENSRBIG00000024746	SMG6	100	91.837	Rhinopithecus_bieti
ENSHGLG00000012882	SMG6	100	91.907	ENSRROG00000030423	SMG6	100	96.282	Rhinopithecus_roxellana
ENSHGLG00000012882	SMG6	100	91.907	ENSSBOG00000022518	SMG6	100	90.218	Saimiri_boliviensis_boliviensis
ENSHGLG00000012882	SMG6	87	42.254	ENSSHAG00000000380	-	99	39.130	Sarcophilus_harrisii
ENSHGLG00000012882	SMG6	96	89.956	ENSSHAG00000010045	SMG6	98	84.814	Sarcophilus_harrisii
ENSHGLG00000012882	SMG6	91	61.373	ENSSFOG00015005436	smg6	70	57.753	Scleropages_formosus
ENSHGLG00000012882	SMG6	87	58.108	ENSSMAG00000019777	smg6	73	54.180	Scophthalmus_maximus
ENSHGLG00000012882	SMG6	84	58.962	ENSSDUG00000016412	smg6	74	55.339	Seriola_dumerili
ENSHGLG00000012882	SMG6	84	58.962	ENSSLDG00000020747	smg6	81	52.619	Seriola_lalandi_dorsalis
ENSHGLG00000012882	SMG6	94	81.250	ENSSPUG00000007152	SMG6	99	69.193	Sphenodon_punctatus
ENSHGLG00000012882	SMG6	91	56.579	ENSSPAG00000015633	smg6	74	53.882	Stegastes_partitus
ENSHGLG00000012882	SMG6	100	91.561	ENSSSCG00000017826	SMG6	100	91.561	Sus_scrofa
ENSHGLG00000012882	SMG6	94	83.857	ENSTGUG00000005836	SMG6	100	71.759	Taeniopygia_guttata
ENSHGLG00000012882	SMG6	84	60.488	ENSTRUG00000000358	smg6	81	55.112	Takifugu_rubripes
ENSHGLG00000012882	SMG6	100	49.770	ENSTNIG00000016164	smg6	100	49.771	Tetraodon_nigroviridis
ENSHGLG00000012882	SMG6	96	98.529	ENSTBEG00000011424	SMG6	100	88.459	Tupaia_belangeri
ENSHGLG00000012882	SMG6	95	92.478	ENSTTRG00000001175	SMG6	91	90.758	Tursiops_truncatus
ENSHGLG00000012882	SMG6	100	92.065	ENSUAMG00000025152	SMG6	100	91.511	Ursus_americanus
ENSHGLG00000012882	SMG6	98	92.358	ENSUMAG00000009306	SMG6	100	92.358	Ursus_maritimus
ENSHGLG00000012882	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSHGLG00000012882	SMG6	100	91.485	ENSVVUG00000021727	SMG6	100	91.485	Vulpes_vulpes
ENSHGLG00000012882	SMG6	98	58.761	ENSXETG00000023799	SMG6	100	58.708	Xenopus_tropicalis
ENSHGLG00000012882	SMG6	89	59.091	ENSXCOG00000009867	smg6	74	54.960	Xiphophorus_couchianus
ENSHGLG00000012882	SMG6	89	57.080	ENSXMAG00000010321	smg6	74	53.906	Xiphophorus_maculatus