EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00000013819 (Gene tree)
Gene ID: -
Gene Symbol: Pum1
Alias: -
Full Name: Heterocephalus glaber pumilio RNA binding family member 1 (Pum1)%2C mRNA.
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Minus strand
Length: 125531 bases
Position: chrJH602077.1:14361012-14486542
Accession: NM_001310237
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000019274	PUF	PF00806.19	3.4e-71	1	8
ENSHGLP00000019274	PUF	PF00806.19	3.4e-71	2	8
ENSHGLP00000019274	PUF	PF00806.19	3.4e-71	3	8
ENSHGLP00000019274	PUF	PF00806.19	3.4e-71	4	8
ENSHGLP00000019274	PUF	PF00806.19	3.4e-71	5	8
ENSHGLP00000019274	PUF	PF00806.19	3.4e-71	6	8
ENSHGLP00000019274	PUF	PF00806.19	3.4e-71	7	8
ENSHGLP00000019274	PUF	PF00806.19	3.4e-71	8	8
ENSHGLP00000019273	PUF	PF00806.19	3e-70	1	8
ENSHGLP00000019273	PUF	PF00806.19	3e-70	2	8
ENSHGLP00000019273	PUF	PF00806.19	3e-70	3	8
ENSHGLP00000019273	PUF	PF00806.19	3e-70	4	8
ENSHGLP00000019273	PUF	PF00806.19	3e-70	5	8
ENSHGLP00000019273	PUF	PF00806.19	3e-70	6	8
ENSHGLP00000019273	PUF	PF00806.19	3e-70	7	8
ENSHGLP00000019273	PUF	PF00806.19	3e-70	8	8
ENSHGLP00000019272	PUF	PF00806.19	4.8e-70	1	8
ENSHGLP00000019272	PUF	PF00806.19	4.8e-70	2	8
ENSHGLP00000019272	PUF	PF00806.19	4.8e-70	3	8
ENSHGLP00000019272	PUF	PF00806.19	4.8e-70	4	8
ENSHGLP00000019272	PUF	PF00806.19	4.8e-70	5	8
ENSHGLP00000019272	PUF	PF00806.19	4.8e-70	6	8
ENSHGLP00000019272	PUF	PF00806.19	4.8e-70	7	8
ENSHGLP00000019272	PUF	PF00806.19	4.8e-70	8	8
ENSHGLP00000019271	PUF	PF00806.19	6.3e-70	1	8
ENSHGLP00000019271	PUF	PF00806.19	6.3e-70	2	8
ENSHGLP00000019271	PUF	PF00806.19	6.3e-70	3	8
ENSHGLP00000019271	PUF	PF00806.19	6.3e-70	4	8
ENSHGLP00000019271	PUF	PF00806.19	6.3e-70	5	8
ENSHGLP00000019271	PUF	PF00806.19	6.3e-70	6	8
ENSHGLP00000019271	PUF	PF00806.19	6.3e-70	7	8
ENSHGLP00000019271	PUF	PF00806.19	6.3e-70	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000019465	-	4680	XM_004850806	ENSHGLP00000019274	944 (aa)	XP_004850863	UPI00034F98EE
ENSHGLT00000019464	-	5125	XM_004850800	ENSHGLP00000019273	1092 (aa)	XP_004850857	UPI00034F377D
ENSHGLT00000019463	-	5801	XM_021262820	ENSHGLP00000019272	1154 (aa)	XP_021118479	UPI000A33F897
ENSHGLT00000019462	-	5906	XM_004850797	ENSHGLP00000019271	1189 (aa)	XP_004850854	A0A0A7HRS4

Gene Model

Click here to download ENSHGLG00000013819's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000013819's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00000013819	Pum1	86	85.480	ENSHGLG00000007892	PUM2	100	86.861

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000013819	Pum1	100	99.159	ENSG00000134644	PUM1	100	99.159	Homo_sapiens
ENSHGLG00000013819	Pum1	100	80.941	ENSAPOG00000021632	pum1	100	90.534	Acanthochromis_polyacanthus
ENSHGLG00000013819	Pum1	100	98.739	ENSAMEG00000017656	PUM1	97	98.739	Ailuropoda_melanoleuca
ENSHGLG00000013819	Pum1	100	80.941	ENSACIG00000021013	pum1	100	76.179	Amphilophus_citrinellus
ENSHGLG00000013819	Pum1	100	80.941	ENSAOCG00000003944	pum1	100	90.534	Amphiprion_ocellaris
ENSHGLG00000013819	Pum1	100	80.941	ENSAPEG00000014550	pum1	100	90.534	Amphiprion_percula
ENSHGLG00000013819	Pum1	100	80.941	ENSATEG00000016004	pum1	100	90.534	Anabas_testudineus
ENSHGLG00000013819	Pum1	100	97.512	ENSAPLG00000009351	PUM1	100	97.225	Anas_platyrhynchos
ENSHGLG00000013819	Pum1	100	95.641	ENSACAG00000000682	PUM1	98	95.122	Anolis_carolinensis
ENSHGLG00000013819	Pum1	100	98.738	ENSANAG00000027865	PUM1	100	98.738	Aotus_nancymaae
ENSHGLG00000013819	Pum1	90	76.389	ENSACLG00000019354	pum1	100	78.651	Astatotilapia_calliptera
ENSHGLG00000013819	Pum1	100	84.243	ENSAMXG00000020607	pum1	96	78.864	Astyanax_mexicanus
ENSHGLG00000013819	Pum1	100	98.810	ENSBTAG00000018979	PUM1	100	99.027	Bos_taurus
ENSHGLG00000013819	Pum1	100	98.907	ENSCJAG00000006035	PUM1	100	98.907	Callithrix_jacchus
ENSHGLG00000013819	Pum1	100	98.611	ENSCAFG00000011205	PUM1	100	96.552	Canis_familiaris
ENSHGLG00000013819	Pum1	92	96.815	ENSCAFG00020024616	PUM1	99	98.197	Canis_lupus_dingo
ENSHGLG00000013819	Pum1	100	98.654	ENSCHIG00000012952	PUM1	100	98.654	Capra_hircus
ENSHGLG00000013819	Pum1	100	98.907	ENSTSYG00000008868	PUM1	100	98.907	Carlito_syrichta
ENSHGLG00000013819	Pum1	100	99.327	ENSCPOG00000031613	PUM1	100	99.327	Cavia_porcellus
ENSHGLG00000013819	Pum1	100	99.084	ENSCATG00000017991	PUM1	100	99.270	Cercocebus_atys
ENSHGLG00000013819	Pum1	100	99.411	ENSCLAG00000007662	PUM1	100	99.411	Chinchilla_lanigera
ENSHGLG00000013819	Pum1	100	98.611	ENSCSAG00000001028	PUM1	100	98.250	Chlorocebus_sabaeus
ENSHGLG00000013819	Pum1	92	98.611	ENSCHOG00000010245	PUM1	93	96.121	Choloepus_hoffmanni
ENSHGLG00000013819	Pum1	100	97.272	ENSCPBG00000009288	PUM1	100	97.324	Chrysemys_picta_bellii
ENSHGLG00000013819	Pum1	100	99.075	ENSCANG00000042606	PUM1	100	98.941	Colobus_angolensis_palliatus
ENSHGLG00000013819	Pum1	100	98.626	ENSCGRG00001024949	Pum1	100	98.626	Cricetulus_griseus_chok1gshd
ENSHGLG00000013819	Pum1	100	98.626	ENSCGRG00000014197	Pum1	100	98.626	Cricetulus_griseus_crigri
ENSHGLG00000013819	Pum1	90	75.833	ENSCSEG00000015981	pum1	100	77.521	Cynoglossus_semilaevis
ENSHGLG00000013819	Pum1	100	80.446	ENSCVAG00000007043	pum1	100	75.392	Cyprinodon_variegatus
ENSHGLG00000013819	Pum1	100	84.367	ENSDARG00000099256	pum1	100	79.114	Danio_rerio
ENSHGLG00000013819	Pum1	100	98.611	ENSDNOG00000010939	PUM1	100	98.570	Dasypus_novemcinctus
ENSHGLG00000013819	Pum1	85	99.275	ENSDORG00000001875	Pum1	100	99.270	Dipodomys_ordii
ENSHGLG00000013819	Pum1	85	100.000	ENSETEG00000004355	PUM1	87	93.366	Echinops_telfairi
ENSHGLG00000013819	Pum1	100	98.611	ENSEASG00005010813	PUM1	100	98.486	Equus_asinus_asinus
ENSHGLG00000013819	Pum1	100	98.486	ENSECAG00000021369	PUM1	100	98.486	Equus_caballus
ENSHGLG00000013819	Pum1	80	99.383	ENSEEUG00000003871	PUM1	74	99.322	Erinaceus_europaeus
ENSHGLG00000013819	Pum1	100	82.987	ENSELUG00000002409	pum1	100	83.292	Esox_lucius
ENSHGLG00000013819	Pum1	100	98.991	ENSFCAG00000010374	PUM1	100	99.167	Felis_catus
ENSHGLG00000013819	Pum1	100	96.044	ENSFALG00000001214	PUM1	97	94.640	Ficedula_albicollis
ENSHGLG00000013819	Pum1	100	99.664	ENSFDAG00000011319	PUM1	100	99.664	Fukomys_damarensis
ENSHGLG00000013819	Pum1	70	87.833	ENSGMOG00000010491	pum1	100	74.505	Gadus_morhua
ENSHGLG00000013819	Pum1	100	97.637	ENSGALG00000042598	PUM1	100	97.400	Gallus_gallus
ENSHGLG00000013819	Pum1	100	80.569	ENSGAFG00000015617	pum1	100	89.806	Gambusia_affinis
ENSHGLG00000013819	Pum1	100	80.665	ENSGACG00000005717	pum1	100	76.030	Gasterosteus_aculeatus
ENSHGLG00000013819	Pum1	100	97.139	ENSGAGG00000001290	PUM1	100	96.972	Gopherus_agassizii
ENSHGLG00000013819	Pum1	100	99.084	ENSGGOG00000011983	PUM1	100	99.084	Gorilla_gorilla
ENSHGLG00000013819	Pum1	100	80.693	ENSHBUG00000018718	pum1	100	75.970	Haplochromis_burtoni
ENSHGLG00000013819	Pum1	100	100.000	ENSHGLG00100008621	Pum1	100	100.000	Heterocephalus_glaber_male
ENSHGLG00000013819	Pum1	100	82.389	ENSIPUG00000020421	pum1	100	77.658	Ictalurus_punctatus
ENSHGLG00000013819	Pum1	100	99.176	ENSSTOG00000010757	PUM1	100	99.176	Ictidomys_tridecemlineatus
ENSHGLG00000013819	Pum1	100	98.738	ENSJJAG00000000530	Pum1	100	98.738	Jaculus_jaculus
ENSHGLG00000013819	Pum1	100	80.074	ENSKMAG00000003481	pum1	100	75.557	Kryptolebias_marmoratus
ENSHGLG00000013819	Pum1	100	80.173	ENSLBEG00000002527	pum1	100	75.600	Labrus_bergylta
ENSHGLG00000013819	Pum1	100	88.104	ENSLACG00000017188	PUM1	99	86.261	Latimeria_chalumnae
ENSHGLG00000013819	Pum1	100	91.180	ENSLOCG00000005210	pum1	99	87.896	Lepisosteus_oculatus
ENSHGLG00000013819	Pum1	100	98.318	ENSLAFG00000003178	PUM1	100	98.318	Loxodonta_africana
ENSHGLG00000013819	Pum1	100	99.084	ENSMFAG00000010291	PUM1	100	99.270	Macaca_fascicularis
ENSHGLG00000013819	Pum1	100	99.084	ENSMMUG00000013520	PUM1	100	99.084	Macaca_mulatta
ENSHGLG00000013819	Pum1	100	99.084	ENSMNEG00000034639	PUM1	100	99.084	Macaca_nemestrina
ENSHGLG00000013819	Pum1	100	99.075	ENSMLEG00000038743	PUM1	100	98.941	Mandrillus_leucophaeus
ENSHGLG00000013819	Pum1	100	80.693	ENSMAMG00000011606	pum1	100	76.053	Mastacembelus_armatus
ENSHGLG00000013819	Pum1	100	80.693	ENSMZEG00005005834	pum1	100	75.970	Maylandia_zebra
ENSHGLG00000013819	Pum1	100	97.264	ENSMGAG00000000724	PUM1	100	97.140	Meleagris_gallopavo
ENSHGLG00000013819	Pum1	100	98.738	ENSMAUG00000022090	Pum1	100	98.738	Mesocricetus_auratus
ENSHGLG00000013819	Pum1	99	96.630	ENSMICG00000012213	-	99	96.630	Microcebus_murinus
ENSHGLG00000013819	Pum1	100	98.823	ENSMICG00000007713	-	100	98.823	Microcebus_murinus
ENSHGLG00000013819	Pum1	100	98.738	ENSMOCG00000015463	Pum1	100	98.738	Microtus_ochrogaster
ENSHGLG00000013819	Pum1	90	87.816	ENSMMOG00000019817	pum1	100	90.291	Mola_mola
ENSHGLG00000013819	Pum1	100	97.379	ENSMODG00000017067	PUM1	100	97.313	Monodelphis_domestica
ENSHGLG00000013819	Pum1	90	88.046	ENSMALG00000016399	pum1	100	90.534	Monopterus_albus
ENSHGLG00000013819	Pum1	100	98.402	MGP_CAROLIEiJ_G0026549	Pum1	100	98.402	Mus_caroli
ENSHGLG00000013819	Pum1	100	98.654	ENSMUSG00000028580	Pum1	100	98.654	Mus_musculus
ENSHGLG00000013819	Pum1	100	98.486	MGP_PahariEiJ_G0028881	Pum1	100	98.486	Mus_pahari
ENSHGLG00000013819	Pum1	100	98.570	MGP_SPRETEiJ_G0027529	Pum1	100	98.570	Mus_spretus
ENSHGLG00000013819	Pum1	100	98.611	ENSMPUG00000015454	PUM1	100	98.402	Mustela_putorius_furo
ENSHGLG00000013819	Pum1	100	98.611	ENSMLUG00000006490	PUM1	100	98.570	Myotis_lucifugus
ENSHGLG00000013819	Pum1	100	99.075	ENSNGAG00000002378	Pum1	100	99.075	Nannospalax_galili
ENSHGLG00000013819	Pum1	100	78.033	ENSNBRG00000010689	pum1	100	83.086	Neolamprologus_brichardi
ENSHGLG00000013819	Pum1	100	97.917	ENSNLEG00000001151	PUM1	100	97.917	Nomascus_leucogenys
ENSHGLG00000013819	Pum1	84	96.622	ENSMEUG00000000976	-	82	96.622	Notamacropus_eugenii
ENSHGLG00000013819	Pum1	84	100.000	ENSOPRG00000001776	PUM1	73	100.000	Ochotona_princeps
ENSHGLG00000013819	Pum1	100	99.306	ENSODEG00000003465	PUM1	100	99.306	Octodon_degus
ENSHGLG00000013819	Pum1	100	81.250	ENSONIG00000002290	pum1	100	76.301	Oreochromis_niloticus
ENSHGLG00000013819	Pum1	81	77.561	ENSOANG00000004902	-	100	77.120	Ornithorhynchus_anatinus
ENSHGLG00000013819	Pum1	100	98.611	ENSOCUG00000008641	PUM1	99	98.486	Oryctolagus_cuniculus
ENSHGLG00000013819	Pum1	100	81.559	ENSORLG00000011482	pum1	100	75.720	Oryzias_latipes
ENSHGLG00000013819	Pum1	100	81.683	ENSORLG00020019461	pum1	100	75.720	Oryzias_latipes_hni
ENSHGLG00000013819	Pum1	100	81.683	ENSORLG00015011375	pum1	100	75.802	Oryzias_latipes_hsok
ENSHGLG00000013819	Pum1	90	89.195	ENSOMEG00000009312	pum1	100	89.806	Oryzias_melastigma
ENSHGLG00000013819	Pum1	100	97.917	ENSOGAG00000011063	PUM1	100	96.138	Otolemur_garnettii
ENSHGLG00000013819	Pum1	100	98.611	ENSOARG00000001899	PUM1	100	98.540	Ovis_aries
ENSHGLG00000013819	Pum1	100	99.084	ENSPPAG00000044003	PUM1	100	99.084	Pan_paniscus
ENSHGLG00000013819	Pum1	100	98.907	ENSPPRG00000001370	PUM1	100	98.729	Panthera_pardus
ENSHGLG00000013819	Pum1	100	98.738	ENSPTIG00000010798	PUM1	100	98.611	Panthera_tigris_altaica
ENSHGLG00000013819	Pum1	100	99.084	ENSPTRG00000000453	PUM1	100	99.084	Pan_troglodytes
ENSHGLG00000013819	Pum1	100	99.075	ENSPANG00000016338	PUM1	100	99.270	Papio_anubis
ENSHGLG00000013819	Pum1	100	82.252	ENSPKIG00000010578	pum1	100	78.017	Paramormyrops_kingsleyae
ENSHGLG00000013819	Pum1	100	97.506	ENSPSIG00000014118	PUM1	100	97.309	Pelodiscus_sinensis
ENSHGLG00000013819	Pum1	100	76.403	ENSPMGG00000005836	pum1	100	81.540	Periophthalmus_magnuspinnatus
ENSHGLG00000013819	Pum1	100	98.823	ENSPEMG00000010009	Pum1	100	98.823	Peromyscus_maniculatus_bairdii
ENSHGLG00000013819	Pum1	100	97.589	ENSPCIG00000014151	PUM1	100	97.637	Phascolarctos_cinereus
ENSHGLG00000013819	Pum1	93	83.374	ENSPFOG00000007289	pum1	99	81.957	Poecilia_formosa
ENSHGLG00000013819	Pum1	100	82.469	ENSPLAG00000007256	pum1	100	77.847	Poecilia_latipinna
ENSHGLG00000013819	Pum1	85	82.593	ENSPMEG00000019543	pum1	99	78.033	Poecilia_mexicana
ENSHGLG00000013819	Pum1	100	80.569	ENSPREG00000005195	pum1	100	80.606	Poecilia_reticulata
ENSHGLG00000013819	Pum1	100	98.630	ENSPPYG00000001621	PUM1	100	97.115	Pongo_abelii
ENSHGLG00000013819	Pum1	84	98.462	ENSPCAG00000001979	PUM1	74	98.462	Procavia_capensis
ENSHGLG00000013819	Pum1	100	98.823	ENSPCOG00000004398	PUM1	100	98.823	Propithecus_coquereli
ENSHGLG00000013819	Pum1	100	98.611	ENSPVAG00000005207	PUM1	97	96.720	Pteropus_vampyrus
ENSHGLG00000013819	Pum1	100	80.693	ENSPNYG00000009518	pum1	100	81.068	Pundamilia_nyererei
ENSHGLG00000013819	Pum1	100	84.491	ENSPNAG00000026728	pum1	100	80.292	Pygocentrus_nattereri
ENSHGLG00000013819	Pum1	100	98.502	ENSRNOG00000011709	Pum1	100	98.402	Rattus_norvegicus
ENSHGLG00000013819	Pum1	100	99.084	ENSRBIG00000042521	PUM1	100	99.270	Rhinopithecus_bieti
ENSHGLG00000013819	Pum1	100	99.075	ENSRROG00000020156	PUM1	100	98.941	Rhinopithecus_roxellana
ENSHGLG00000013819	Pum1	100	98.991	ENSSBOG00000032037	PUM1	100	98.991	Saimiri_boliviensis_boliviensis
ENSHGLG00000013819	Pum1	100	97.379	ENSSHAG00000010918	PUM1	100	97.313	Sarcophilus_harrisii
ENSHGLG00000013819	Pum1	100	80.693	ENSSMAG00000010918	pum1	100	90.534	Scophthalmus_maximus
ENSHGLG00000013819	Pum1	100	80.817	ENSSDUG00000009021	pum1	100	76.301	Seriola_dumerili
ENSHGLG00000013819	Pum1	100	80.817	ENSSLDG00000009667	pum1	100	78.364	Seriola_lalandi_dorsalis
ENSHGLG00000013819	Pum1	99	98.611	ENSSARG00000003055	PUM1	91	99.115	Sorex_araneus
ENSHGLG00000013819	Pum1	100	97.509	ENSSPUG00000006267	PUM1	100	96.720	Sphenodon_punctatus
ENSHGLG00000013819	Pum1	100	80.941	ENSSPAG00000016636	pum1	100	90.534	Stegastes_partitus
ENSHGLG00000013819	Pum1	100	99.075	ENSSSCG00000003591	PUM1	100	99.167	Sus_scrofa
ENSHGLG00000013819	Pum1	100	80.569	ENSTRUG00000013121	pum1	100	82.716	Takifugu_rubripes
ENSHGLG00000013819	Pum1	100	80.346	ENSTNIG00000016983	pum1	99	76.202	Tetraodon_nigroviridis
ENSHGLG00000013819	Pum1	87	96.341	ENSTBEG00000013810	PUM1	89	96.341	Tupaia_belangeri
ENSHGLG00000013819	Pum1	92	98.815	ENSTTRG00000007436	PUM1	90	98.815	Tursiops_truncatus
ENSHGLG00000013819	Pum1	99	98.249	ENSUAMG00000018262	-	100	98.249	Ursus_americanus
ENSHGLG00000013819	Pum1	95	99.034	ENSUMAG00000009211	PUM1	100	99.027	Ursus_maritimus
ENSHGLG00000013819	Pum1	100	98.506	ENSVPAG00000005902	PUM1	92	98.983	Vicugna_pacos
ENSHGLG00000013819	Pum1	100	98.823	ENSVVUG00000014631	PUM1	100	99.027	Vulpes_vulpes
ENSHGLG00000013819	Pum1	100	88.323	ENSXETG00000012904	pum1	99	86.398	Xenopus_tropicalis
ENSHGLG00000013819	Pum1	100	80.569	ENSXMAG00000002945	pum1	100	77.640	Xiphophorus_maculatus