EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00000014476 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Minus strand
Length: 112766 bases
Position: chrJH602043.1:18907959-19020724
Accession: 101701152
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000020237	XRN_N	PF03159.18	3.4e-96	1	1
ENSHGLP00000020236	XRN_N	PF03159.18	7.5e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000020437	XRN1-201	5205	XM_004834376	ENSHGLP00000020236	1734 (aa)	XP_004834433	UPI00034F330B
ENSHGLT00000020438	XRN1-202	2907	XM_013071058	ENSHGLP00000020237	968 (aa)	XP_012926512	-

Gene Model

Click here to download ENSHGLG00000014476's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000014476's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00000014476	XRN1	61	39.970	ENSHGLG00000014831	XRN2	71	39.376

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000014476	XRN1	99	96.513	ENSG00000114127	XRN1	100	98.788	Homo_sapiens
ENSHGLG00000014476	XRN1	99	78.095	ENSAPOG00000000622	xrn1	100	70.208	Acanthochromis_polyacanthus
ENSHGLG00000014476	XRN1	99	95.880	ENSAMEG00000012538	XRN1	100	90.846	Ailuropoda_melanoleuca
ENSHGLG00000014476	XRN1	99	78.288	ENSACIG00000001057	xrn1	99	69.555	Amphilophus_citrinellus
ENSHGLG00000014476	XRN1	99	78.219	ENSAOCG00000014097	xrn1	86	85.246	Amphiprion_ocellaris
ENSHGLG00000014476	XRN1	99	78.219	ENSAPEG00000006620	xrn1	91	72.552	Amphiprion_percula
ENSHGLG00000014476	XRN1	99	76.190	ENSATEG00000009752	xrn1	99	71.349	Anabas_testudineus
ENSHGLG00000014476	XRN1	97	88.742	ENSAPLG00000004905	XRN1	100	75.956	Anas_platyrhynchos
ENSHGLG00000014476	XRN1	99	86.032	ENSACAG00000004985	XRN1	100	72.472	Anolis_carolinensis
ENSHGLG00000014476	XRN1	99	97.138	ENSANAG00000029013	XRN1	99	95.675	Aotus_nancymaae
ENSHGLG00000014476	XRN1	99	76.862	ENSACLG00000004806	xrn1	99	61.177	Astatotilapia_calliptera
ENSHGLG00000014476	XRN1	99	74.127	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSHGLG00000014476	XRN1	99	95.509	ENSBTAG00000011524	XRN1	100	88.094	Bos_taurus
ENSHGLG00000014476	XRN1	93	52.632	WBGene00012730	xrn-1	81	38.519	Caenorhabditis_elegans
ENSHGLG00000014476	XRN1	99	96.672	ENSCJAG00000001872	XRN1	100	89.965	Callithrix_jacchus
ENSHGLG00000014476	XRN1	99	96.407	ENSCAFG00000007783	XRN1	100	91.349	Canis_familiaris
ENSHGLG00000014476	XRN1	99	96.407	ENSCAFG00020009120	XRN1	99	94.027	Canis_lupus_dingo
ENSHGLG00000014476	XRN1	99	95.509	ENSCHIG00000019192	XRN1	99	90.647	Capra_hircus
ENSHGLG00000014476	XRN1	99	96.038	ENSTSYG00000002705	XRN1	100	89.908	Carlito_syrichta
ENSHGLG00000014476	XRN1	97	75.530	ENSCAPG00000004604	-	99	78.939	Cavia_aperea
ENSHGLG00000014476	XRN1	100	96.591	ENSCCAG00000034800	XRN1	99	97.147	Cebus_capucinus
ENSHGLG00000014476	XRN1	99	96.830	ENSCATG00000041794	XRN1	100	90.254	Cercocebus_atys
ENSHGLG00000014476	XRN1	100	97.831	ENSCLAG00000001451	XRN1	99	97.831	Chinchilla_lanigera
ENSHGLG00000014476	XRN1	99	96.989	ENSCSAG00000011265	XRN1	100	89.697	Chlorocebus_sabaeus
ENSHGLG00000014476	XRN1	57	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSHGLG00000014476	XRN1	84	61.538	ENSCSAVG00000008584	-	98	45.234	Ciona_savignyi
ENSHGLG00000014476	XRN1	100	96.694	ENSCANG00000037495	XRN1	99	96.989	Colobus_angolensis_palliatus
ENSHGLG00000014476	XRN1	99	95.880	ENSCGRG00001019411	Xrn1	99	95.880	Cricetulus_griseus_chok1gshd
ENSHGLG00000014476	XRN1	99	95.880	ENSCGRG00000012464	Xrn1	99	95.880	Cricetulus_griseus_crigri
ENSHGLG00000014476	XRN1	99	77.619	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSHGLG00000014476	XRN1	99	76.471	ENSCVAG00000013089	xrn1	99	72.359	Cyprinodon_variegatus
ENSHGLG00000014476	XRN1	99	79.398	ENSDARG00000091652	xrn1	98	79.536	Danio_rerio
ENSHGLG00000014476	XRN1	99	95.548	ENSDORG00000013833	Xrn1	100	87.364	Dipodomys_ordii
ENSHGLG00000014476	XRN1	94	55.630	FBgn0020261	pcm	76	39.938	Drosophila_melanogaster
ENSHGLG00000014476	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	98.387	Echinops_telfairi
ENSHGLG00000014476	XRN1	100	95.764	ENSEASG00005002687	XRN1	100	95.020	Equus_asinus_asinus
ENSHGLG00000014476	XRN1	99	95.808	ENSECAG00000008301	XRN1	100	88.666	Equus_caballus
ENSHGLG00000014476	XRN1	84	97.023	ENSEEUG00000011323	XRN1	92	83.187	Erinaceus_europaeus
ENSHGLG00000014476	XRN1	99	78.481	ENSELUG00000000169	xrn1	100	61.988	Esox_lucius
ENSHGLG00000014476	XRN1	99	94.311	ENSFCAG00000027589	XRN1	99	95.824	Felis_catus
ENSHGLG00000014476	XRN1	99	88.553	ENSFALG00000007021	XRN1	100	74.706	Ficedula_albicollis
ENSHGLG00000014476	XRN1	100	98.140	ENSFDAG00000020494	XRN1	99	98.140	Fukomys_damarensis
ENSHGLG00000014476	XRN1	50	70.894	ENSFHEG00000017356	-	98	70.270	Fundulus_heteroclitus
ENSHGLG00000014476	XRN1	99	76.630	ENSGMOG00000006396	xrn1	83	67.893	Gadus_morhua
ENSHGLG00000014476	XRN1	99	88.871	ENSGALG00000002706	XRN1	100	75.407	Gallus_gallus
ENSHGLG00000014476	XRN1	99	76.498	ENSGACG00000014328	xrn1	100	61.007	Gasterosteus_aculeatus
ENSHGLG00000014476	XRN1	99	88.095	ENSGAGG00000017535	XRN1	99	79.018	Gopherus_agassizii
ENSHGLG00000014476	XRN1	99	96.355	ENSGGOG00000008047	XRN1	100	89.965	Gorilla_gorilla
ENSHGLG00000014476	XRN1	99	75.277	ENSHBUG00000005908	xrn1	98	73.101	Haplochromis_burtoni
ENSHGLG00000014476	XRN1	100	100.000	ENSHGLG00100015130	XRN1	100	100.000	Heterocephalus_glaber_male
ENSHGLG00000014476	XRN1	99	75.846	ENSHCOG00000014062	xrn1	99	69.460	Hippocampus_comes
ENSHGLG00000014476	XRN1	99	79.048	ENSIPUG00000015229	xrn1	99	61.327	Ictalurus_punctatus
ENSHGLG00000014476	XRN1	99	96.791	ENSSTOG00000013552	XRN1	99	96.791	Ictidomys_tridecemlineatus
ENSHGLG00000014476	XRN1	97	94.274	ENSJJAG00000010863	Xrn1	99	95.050	Jaculus_jaculus
ENSHGLG00000014476	XRN1	99	77.266	ENSKMAG00000021356	xrn1	94	76.371	Kryptolebias_marmoratus
ENSHGLG00000014476	XRN1	99	77.583	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSHGLG00000014476	XRN1	99	84.444	ENSLACG00000009020	XRN1	100	69.590	Latimeria_chalumnae
ENSHGLG00000014476	XRN1	99	82.306	ENSLOCG00000007944	xrn1	100	65.190	Lepisosteus_oculatus
ENSHGLG00000014476	XRN1	99	96.184	ENSLAFG00000015426	XRN1	100	95.884	Loxodonta_africana
ENSHGLG00000014476	XRN1	99	96.672	ENSMFAG00000032599	XRN1	100	90.311	Macaca_fascicularis
ENSHGLG00000014476	XRN1	99	96.830	ENSMMUG00000014038	XRN1	100	90.369	Macaca_mulatta
ENSHGLG00000014476	XRN1	99	96.355	ENSMNEG00000034217	XRN1	100	90.138	Macaca_nemestrina
ENSHGLG00000014476	XRN1	99	77.937	ENSMAMG00000013219	xrn1	94	76.701	Mastacembelus_armatus
ENSHGLG00000014476	XRN1	99	77.021	ENSMZEG00005015099	xrn1	99	61.177	Maylandia_zebra
ENSHGLG00000014476	XRN1	97	84.818	ENSMGAG00000006333	XRN1	100	75.580	Meleagris_gallopavo
ENSHGLG00000014476	XRN1	99	96.038	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSHGLG00000014476	XRN1	99	94.099	ENSMOCG00000008665	Xrn1	99	94.295	Microtus_ochrogaster
ENSHGLG00000014476	XRN1	54	68.382	ENSMMOG00000020896	-	96	68.199	Mola_mola
ENSHGLG00000014476	XRN1	99	89.809	ENSMODG00000021236	XRN1	100	79.179	Monodelphis_domestica
ENSHGLG00000014476	XRN1	99	71.270	ENSMALG00000004098	xrn1	98	66.484	Monopterus_albus
ENSHGLG00000014476	XRN1	100	94.525	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSHGLG00000014476	XRN1	100	94.421	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSHGLG00000014476	XRN1	100	94.421	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSHGLG00000014476	XRN1	100	94.421	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSHGLG00000014476	XRN1	99	96.407	ENSMPUG00000012040	XRN1	100	88.552	Mustela_putorius_furo
ENSHGLG00000014476	XRN1	98	95.390	ENSMLUG00000016885	XRN1	100	88.646	Myotis_lucifugus
ENSHGLG00000014476	XRN1	99	92.012	ENSNGAG00000023964	Xrn1	100	92.012	Nannospalax_galili
ENSHGLG00000014476	XRN1	99	97.306	ENSNLEG00000004726	XRN1	100	90.311	Nomascus_leucogenys
ENSHGLG00000014476	XRN1	75	98.969	ENSMEUG00000014473	-	77	99.029	Notamacropus_eugenii
ENSHGLG00000014476	XRN1	74	90.217	ENSOPRG00000007337	-	78	83.840	Ochotona_princeps
ENSHGLG00000014476	XRN1	99	77.778	ENSONIG00000016673	xrn1	99	64.958	Oreochromis_niloticus
ENSHGLG00000014476	XRN1	85	88.710	ENSOANG00000006735	XRN1	100	75.993	Ornithorhynchus_anatinus
ENSHGLG00000014476	XRN1	99	96.197	ENSOCUG00000001861	XRN1	100	89.697	Oryctolagus_cuniculus
ENSHGLG00000014476	XRN1	99	78.302	ENSORLG00000013005	xrn1	97	72.713	Oryzias_latipes
ENSHGLG00000014476	XRN1	99	79.206	ENSORLG00020005559	xrn1	100	61.456	Oryzias_latipes_hni
ENSHGLG00000014476	XRN1	99	78.730	ENSORLG00015022523	xrn1	89	72.472	Oryzias_latipes_hsok
ENSHGLG00000014476	XRN1	99	78.537	ENSOMEG00000015397	xrn1	100	72.905	Oryzias_melastigma
ENSHGLG00000014476	XRN1	99	91.143	ENSOGAG00000000170	XRN1	100	86.262	Otolemur_garnettii
ENSHGLG00000014476	XRN1	99	95.509	ENSOARG00000006343	XRN1	99	90.315	Ovis_aries
ENSHGLG00000014476	XRN1	99	96.197	ENSPPAG00000010180	XRN1	100	89.908	Pan_paniscus
ENSHGLG00000014476	XRN1	99	96.108	ENSPPRG00000007125	XRN1	100	89.107	Panthera_pardus
ENSHGLG00000014476	XRN1	99	96.108	ENSPTIG00000021081	XRN1	100	89.164	Panthera_tigris_altaica
ENSHGLG00000014476	XRN1	99	96.197	ENSPTRG00000015482	XRN1	100	89.908	Pan_troglodytes
ENSHGLG00000014476	XRN1	99	96.830	ENSPANG00000010638	XRN1	100	90.369	Papio_anubis
ENSHGLG00000014476	XRN1	99	88.114	ENSPSIG00000018050	XRN1	100	77.011	Pelodiscus_sinensis
ENSHGLG00000014476	XRN1	99	74.174	ENSPMGG00000002648	xrn1	99	78.165	Periophthalmus_magnuspinnatus
ENSHGLG00000014476	XRN1	99	94.513	ENSPEMG00000020610	Xrn1	99	95.246	Peromyscus_maniculatus_bairdii
ENSHGLG00000014476	XRN1	92	56.132	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSHGLG00000014476	XRN1	100	89.566	ENSPCIG00000028735	XRN1	100	89.463	Phascolarctos_cinereus
ENSHGLG00000014476	XRN1	99	77.795	ENSPFOG00000013932	xrn1	99	63.631	Poecilia_formosa
ENSHGLG00000014476	XRN1	99	78.095	ENSPLAG00000021653	xrn1	99	63.828	Poecilia_latipinna
ENSHGLG00000014476	XRN1	99	77.883	ENSPMEG00000003076	xrn1	95	63.752	Poecilia_mexicana
ENSHGLG00000014476	XRN1	99	77.760	ENSPREG00000021147	xrn1	100	61.229	Poecilia_reticulata
ENSHGLG00000014476	XRN1	99	96.672	ENSPPYG00000014172	XRN1	100	89.296	Pongo_abelii
ENSHGLG00000014476	XRN1	92	94.872	ENSPCAG00000005638	XRN1	96	81.752	Procavia_capensis
ENSHGLG00000014476	XRN1	100	96.488	ENSPCOG00000013089	XRN1	99	96.488	Propithecus_coquereli
ENSHGLG00000014476	XRN1	99	94.578	ENSPVAG00000016265	XRN1	96	91.681	Pteropus_vampyrus
ENSHGLG00000014476	XRN1	99	77.179	ENSPNYG00000010570	xrn1	98	71.021	Pundamilia_nyererei
ENSHGLG00000014476	XRN1	99	76.461	ENSPNAG00000023531	xrn1	99	60.330	Pygocentrus_nattereri
ENSHGLG00000014476	XRN1	99	94.770	ENSRNOG00000042951	Xrn1	100	87.730	Rattus_norvegicus
ENSHGLG00000014476	XRN1	99	96.830	ENSRBIG00000041227	XRN1	100	89.677	Rhinopithecus_bieti
ENSHGLG00000014476	XRN1	84	54.496	YGL173C	XRN1	73	54.496	Saccharomyces_cerevisiae
ENSHGLG00000014476	XRN1	99	96.830	ENSSBOG00000029561	XRN1	100	89.792	Saimiri_boliviensis_boliviensis
ENSHGLG00000014476	XRN1	97	89.769	ENSSHAG00000016207	XRN1	100	80.012	Sarcophilus_harrisii
ENSHGLG00000014476	XRN1	99	78.378	ENSSFOG00015024211	xrn1	100	61.556	Scleropages_formosus
ENSHGLG00000014476	XRN1	99	79.556	ENSSMAG00000016534	xrn1	98	72.375	Scophthalmus_maximus
ENSHGLG00000014476	XRN1	99	78.956	ENSSDUG00000010306	xrn1	97	72.019	Seriola_dumerili
ENSHGLG00000014476	XRN1	99	78.956	ENSSLDG00000021543	xrn1	99	71.508	Seriola_lalandi_dorsalis
ENSHGLG00000014476	XRN1	89	92.053	ENSSARG00000007741	-	81	85.021	Sorex_araneus
ENSHGLG00000014476	XRN1	50	76.673	ENSSPAG00000009856	-	96	76.876	Stegastes_partitus
ENSHGLG00000014476	XRN1	99	88.553	ENSTGUG00000008498	XRN1	100	76.329	Taeniopygia_guttata
ENSHGLG00000014476	XRN1	99	77.352	ENSTRUG00000004895	xrn1	96	77.825	Takifugu_rubripes
ENSHGLG00000014476	XRN1	97	76.606	ENSTNIG00000017615	xrn1	100	57.951	Tetraodon_nigroviridis
ENSHGLG00000014476	XRN1	99	86.922	ENSTBEG00000003256	XRN1	84	97.305	Tupaia_belangeri
ENSHGLG00000014476	XRN1	99	95.181	ENSTTRG00000012914	XRN1	100	84.144	Tursiops_truncatus
ENSHGLG00000014476	XRN1	99	96.407	ENSUAMG00000001608	XRN1	99	93.175	Ursus_americanus
ENSHGLG00000014476	XRN1	99	96.407	ENSUMAG00000013625	XRN1	100	91.811	Ursus_maritimus
ENSHGLG00000014476	XRN1	99	96.038	ENSVPAG00000004690	XRN1	100	85.575	Vicugna_pacos
ENSHGLG00000014476	XRN1	100	96.488	ENSVVUG00000024461	XRN1	99	96.488	Vulpes_vulpes
ENSHGLG00000014476	XRN1	99	82.622	ENSXETG00000000619	xrn1	97	88.441	Xenopus_tropicalis
ENSHGLG00000014476	XRN1	99	77.424	ENSXCOG00000007917	xrn1	95	72.616	Xiphophorus_couchianus
ENSHGLG00000014476	XRN1	99	76.948	ENSXMAG00000018320	xrn1	98	72.453	Xiphophorus_maculatus