EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00000015176 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Minus strand
Length: 106944 bases
Position: chrJH602088.1:7142411-7249354
Accession: 101707612
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000021238	Upf2	PF04050.14	6.3e-33	1	1
ENSHGLP00000021238	MIF4G	PF02854.19	2.4e-76	1	3
ENSHGLP00000021238	MIF4G	PF02854.19	2.4e-76	2	3
ENSHGLP00000021238	MIF4G	PF02854.19	2.4e-76	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000021442	-	5190	XM_004854567	ENSHGLP00000021238	1270 (aa)	XP_004854624	UPI00065744AD

Gene Model

Click here to download ENSHGLG00000015176's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000015176's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00000015176	-	99	88.337	ENSHGLG00000003822	-	99	87.313

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000015176	-	100	97.013	ENSG00000151461	UPF2	100	97.013	Homo_sapiens
ENSHGLG00000015176	-	99	77.508	ENSAPOG00000015837	UPF2	100	77.038	Acanthochromis_polyacanthus
ENSHGLG00000015176	-	100	97.876	ENSAMEG00000004586	UPF2	100	97.876	Ailuropoda_melanoleuca
ENSHGLG00000015176	-	99	81.704	ENSACIG00000018078	UPF2	100	81.626	Amphilophus_citrinellus
ENSHGLG00000015176	-	100	81.655	ENSAOCG00000016766	UPF2	100	81.733	Amphiprion_ocellaris
ENSHGLG00000015176	-	100	81.733	ENSAPEG00000019084	UPF2	100	81.811	Amphiprion_percula
ENSHGLG00000015176	-	100	81.634	ENSATEG00000021677	UPF2	99	81.684	Anabas_testudineus
ENSHGLG00000015176	-	100	86.006	ENSAPLG00000010287	UPF2	90	90.877	Anas_platyrhynchos
ENSHGLG00000015176	-	100	91.031	ENSACAG00000009259	UPF2	100	91.345	Anolis_carolinensis
ENSHGLG00000015176	-	99	87.962	ENSANAG00000028451	UPF2	99	85.995	Aotus_nancymaae
ENSHGLG00000015176	-	100	80.796	ENSACLG00000012696	UPF2	100	81.499	Astatotilapia_calliptera
ENSHGLG00000015176	-	99	82.188	ENSAMXG00000013700	UPF2	99	81.064	Astyanax_mexicanus
ENSHGLG00000015176	-	100	97.640	ENSBTAG00000000288	UPF2	100	97.640	Bos_taurus
ENSHGLG00000015176	-	100	97.089	ENSCJAG00000020685	UPF2	100	97.089	Callithrix_jacchus
ENSHGLG00000015176	-	100	97.876	ENSCAFG00000004839	UPF2	100	97.876	Canis_familiaris
ENSHGLG00000015176	-	99	95.508	ENSCAFG00020005882	UPF2	100	95.508	Canis_lupus_dingo
ENSHGLG00000015176	-	100	97.718	ENSCHIG00000020359	UPF2	100	97.718	Capra_hircus
ENSHGLG00000015176	-	100	96.932	ENSTSYG00000000935	UPF2	97	100.000	Carlito_syrichta
ENSHGLG00000015176	-	91	88.038	ENSCAPG00000016658	UPF2	95	87.608	Cavia_aperea
ENSHGLG00000015176	-	99	97.066	ENSCPOG00000008809	UPF2	100	97.066	Cavia_porcellus
ENSHGLG00000015176	-	100	91.739	ENSCCAG00000035991	UPF2	100	91.739	Cebus_capucinus
ENSHGLG00000015176	-	100	97.248	ENSCATG00000032679	UPF2	100	97.248	Cercocebus_atys
ENSHGLG00000015176	-	100	98.976	ENSCLAG00000011434	UPF2	100	98.976	Chinchilla_lanigera
ENSHGLG00000015176	-	100	97.248	ENSCSAG00000013372	UPF2	100	97.248	Chlorocebus_sabaeus
ENSHGLG00000015176	-	87	99.107	ENSCHOG00000000422	UPF2	89	99.107	Choloepus_hoffmanni
ENSHGLG00000015176	-	99	92.508	ENSCPBG00000027823	UPF2	100	92.271	Chrysemys_picta_bellii
ENSHGLG00000015176	-	79	48.667	ENSCSAVG00000007772	-	79	50.000	Ciona_savignyi
ENSHGLG00000015176	-	99	90.312	ENSCANG00000040396	UPF2	100	90.323	Colobus_angolensis_palliatus
ENSHGLG00000015176	-	100	97.561	ENSCGRG00001019347	Upf2	100	97.561	Cricetulus_griseus_chok1gshd
ENSHGLG00000015176	-	100	97.561	ENSCGRG00000017993	Upf2	100	97.561	Cricetulus_griseus_crigri
ENSHGLG00000015176	-	91	80.517	ENSCSEG00000003520	UPF2	71	82.816	Cynoglossus_semilaevis
ENSHGLG00000015176	-	99	81.289	ENSCVAG00000006167	UPF2	100	80.818	Cyprinodon_variegatus
ENSHGLG00000015176	-	100	97.640	ENSDNOG00000018160	UPF2	100	97.640	Dasypus_novemcinctus
ENSHGLG00000015176	-	100	97.797	ENSDORG00000002478	Upf2	100	97.797	Dipodomys_ordii
ENSHGLG00000015176	-	89	36.146	FBgn0029992	Upf2	82	43.860	Drosophila_melanogaster
ENSHGLG00000015176	-	72	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSHGLG00000015176	-	69	68.657	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSHGLG00000015176	-	100	97.795	ENSEASG00005019274	UPF2	100	97.795	Equus_asinus_asinus
ENSHGLG00000015176	-	100	97.874	ENSECAG00000017022	UPF2	100	97.874	Equus_caballus
ENSHGLG00000015176	-	82	94.888	ENSEEUG00000007819	UPF2	82	94.888	Erinaceus_europaeus
ENSHGLG00000015176	-	99	80.453	ENSELUG00000012014	UPF2	100	80.793	Esox_lucius
ENSHGLG00000015176	-	100	99.448	ENSFCAG00000005785	UPF2	100	97.718	Felis_catus
ENSHGLG00000015176	-	100	92.447	ENSFALG00000001889	UPF2	98	92.919	Ficedula_albicollis
ENSHGLG00000015176	-	100	98.583	ENSFDAG00000014348	UPF2	100	98.583	Fukomys_damarensis
ENSHGLG00000015176	-	99	81.804	ENSFHEG00000009826	UPF2	99	81.458	Fundulus_heteroclitus
ENSHGLG00000015176	-	91	83.333	ENSGMOG00000005557	UPF2	100	79.186	Gadus_morhua
ENSHGLG00000015176	-	100	92.767	ENSGALG00000033772	UPF2	100	91.981	Gallus_gallus
ENSHGLG00000015176	-	100	79.859	ENSGAFG00000020867	UPF2	100	80.718	Gambusia_affinis
ENSHGLG00000015176	-	91	84.211	ENSGACG00000001080	UPF2	100	81.314	Gasterosteus_aculeatus
ENSHGLG00000015176	-	100	92.211	ENSGAGG00000002700	UPF2	100	92.604	Gopherus_agassizii
ENSHGLG00000015176	-	100	97.013	ENSGGOG00000001479	UPF2	100	97.013	Gorilla_gorilla
ENSHGLG00000015176	-	100	80.640	ENSHBUG00000004249	UPF2	100	81.470	Haplochromis_burtoni
ENSHGLG00000015176	-	99	96.845	ENSHGLG00100010036	UPF2	100	96.845	Heterocephalus_glaber_male
ENSHGLG00000015176	-	100	79.720	ENSHCOG00000004025	UPF2	99	79.705	Hippocampus_comes
ENSHGLG00000015176	-	100	80.733	ENSIPUG00000015524	UPF2	100	80.484	Ictalurus_punctatus
ENSHGLG00000015176	-	100	98.190	ENSSTOG00000013075	UPF2	100	98.190	Ictidomys_tridecemlineatus
ENSHGLG00000015176	-	100	96.538	ENSJJAG00000004913	Upf2	100	96.538	Jaculus_jaculus
ENSHGLG00000015176	-	92	84.426	ENSKMAG00000001071	UPF2	99	81.761	Kryptolebias_marmoratus
ENSHGLG00000015176	-	78	82.578	ENSLBEG00000000728	-	92	82.679	Labrus_bergylta
ENSHGLG00000015176	-	100	81.804	ENSLBEG00000016394	-	99	81.854	Labrus_bergylta
ENSHGLG00000015176	-	99	78.997	ENSLACG00000015945	UPF2	100	78.918	Latimeria_chalumnae
ENSHGLG00000015176	-	99	85.106	ENSLOCG00000015698	UPF2	100	85.028	Lepisosteus_oculatus
ENSHGLG00000015176	-	100	97.170	ENSMFAG00000043865	UPF2	100	97.170	Macaca_fascicularis
ENSHGLG00000015176	-	100	97.170	ENSMMUG00000008241	UPF2	100	97.170	Macaca_mulatta
ENSHGLG00000015176	-	81	95.610	ENSMNEG00000008062	UPF2	99	95.103	Macaca_nemestrina
ENSHGLG00000015176	-	95	98.309	ENSMLEG00000036120	UPF2	100	98.309	Mandrillus_leucophaeus
ENSHGLG00000015176	-	100	81.245	ENSMAMG00000018276	UPF2	100	81.294	Mastacembelus_armatus
ENSHGLG00000015176	-	100	80.796	ENSMZEG00005021595	UPF2	100	81.499	Maylandia_zebra
ENSHGLG00000015176	-	99	92.054	ENSMGAG00000004573	UPF2	99	91.424	Meleagris_gallopavo
ENSHGLG00000015176	-	100	95.358	ENSMAUG00000016512	Upf2	100	95.358	Mesocricetus_auratus
ENSHGLG00000015176	-	95	99.490	ENSMICG00000001716	UPF2	99	99.482	Microcebus_murinus
ENSHGLG00000015176	-	100	96.772	ENSMOCG00000008263	Upf2	100	96.772	Microtus_ochrogaster
ENSHGLG00000015176	-	99	79.046	ENSMMOG00000006528	UPF2	82	80.901	Mola_mola
ENSHGLG00000015176	-	100	95.043	ENSMODG00000016794	UPF2	100	95.515	Monodelphis_domestica
ENSHGLG00000015176	-	99	81.221	ENSMALG00000002663	UPF2	100	81.191	Monopterus_albus
ENSHGLG00000015176	-	100	97.089	MGP_CAROLIEiJ_G0023157	Upf2	100	97.729	Mus_caroli
ENSHGLG00000015176	-	100	96.932	ENSMUSG00000043241	Upf2	100	96.932	Mus_musculus
ENSHGLG00000015176	-	100	96.853	MGP_PahariEiJ_G0019217	Upf2	100	96.853	Mus_pahari
ENSHGLG00000015176	-	100	97.168	MGP_SPRETEiJ_G0024075	Upf2	100	97.168	Mus_spretus
ENSHGLG00000015176	-	100	97.718	ENSMPUG00000001064	UPF2	100	97.718	Mustela_putorius_furo
ENSHGLG00000015176	-	99	97.251	ENSMLUG00000000228	UPF2	100	97.251	Myotis_lucifugus
ENSHGLG00000015176	-	100	80.796	ENSNBRG00000013629	UPF2	100	81.499	Neolamprologus_brichardi
ENSHGLG00000015176	-	100	97.013	ENSNLEG00000012058	UPF2	100	97.013	Nomascus_leucogenys
ENSHGLG00000015176	-	52	97.927	ENSMEUG00000002180	-	59	97.927	Notamacropus_eugenii
ENSHGLG00000015176	-	82	100.000	ENSOPRG00000006801	-	82	100.000	Ochotona_princeps
ENSHGLG00000015176	-	100	98.504	ENSODEG00000001290	UPF2	100	98.504	Octodon_degus
ENSHGLG00000015176	-	100	80.874	ENSONIG00000017991	UPF2	100	81.577	Oreochromis_niloticus
ENSHGLG00000015176	-	99	97.020	ENSOCUG00000006230	UPF2	100	97.020	Oryctolagus_cuniculus
ENSHGLG00000015176	-	100	80.296	ENSORLG00000017189	UPF2	100	80.562	Oryzias_latipes
ENSHGLG00000015176	-	100	80.296	ENSORLG00020005969	UPF2	100	80.562	Oryzias_latipes_hni
ENSHGLG00000015176	-	100	80.296	ENSORLG00015005713	UPF2	100	80.640	Oryzias_latipes_hsok
ENSHGLG00000015176	-	99	76.971	ENSOMEG00000023420	UPF2	98	77.856	Oryzias_melastigma
ENSHGLG00000015176	-	100	97.089	ENSOGAG00000005796	UPF2	100	97.089	Otolemur_garnettii
ENSHGLG00000015176	-	100	97.565	ENSOARG00000014587	UPF2	100	97.565	Ovis_aries
ENSHGLG00000015176	-	99	92.494	ENSPPAG00000037953	UPF2	100	92.598	Pan_paniscus
ENSHGLG00000015176	-	100	97.718	ENSPPRG00000000690	UPF2	100	97.718	Panthera_pardus
ENSHGLG00000015176	-	100	97.718	ENSPTIG00000008867	UPF2	100	97.718	Panthera_tigris_altaica
ENSHGLG00000015176	-	100	97.013	ENSPTRG00000002291	UPF2	100	97.013	Pan_troglodytes
ENSHGLG00000015176	-	100	97.170	ENSPANG00000023399	UPF2	100	97.170	Papio_anubis
ENSHGLG00000015176	-	100	80.889	ENSPKIG00000025502	UPF2	100	79.875	Paramormyrops_kingsleyae
ENSHGLG00000015176	-	59	91.102	ENSPSIG00000015158	UPF2	95	91.633	Pelodiscus_sinensis
ENSHGLG00000015176	-	99	78.538	ENSPMGG00000005259	UPF2	100	79.245	Periophthalmus_magnuspinnatus
ENSHGLG00000015176	-	93	94.169	ENSPEMG00000015731	Upf2	99	95.627	Peromyscus_maniculatus_bairdii
ENSHGLG00000015176	-	100	94.414	ENSPCIG00000006656	UPF2	100	94.650	Phascolarctos_cinereus
ENSHGLG00000015176	-	100	79.938	ENSPFOG00000017118	UPF2	100	80.796	Poecilia_formosa
ENSHGLG00000015176	-	100	79.938	ENSPLAG00000005094	UPF2	100	80.796	Poecilia_latipinna
ENSHGLG00000015176	-	100	79.938	ENSPMEG00000017009	UPF2	100	80.796	Poecilia_mexicana
ENSHGLG00000015176	-	99	79.937	ENSPREG00000021880	UPF2	100	81.034	Poecilia_reticulata
ENSHGLG00000015176	-	66	98.565	ENSPPYG00000002089	-	100	98.565	Pongo_abelii
ENSHGLG00000015176	-	100	82.533	ENSPCAG00000000684	UPF2	100	83.006	Procavia_capensis
ENSHGLG00000015176	-	99	94.484	ENSPCOG00000021656	UPF2	100	94.563	Propithecus_coquereli
ENSHGLG00000015176	-	100	89.465	ENSPVAG00000017286	UPF2	100	89.858	Pteropus_vampyrus
ENSHGLG00000015176	-	99	78.342	ENSPNYG00000017096	UPF2	100	79.046	Pundamilia_nyererei
ENSHGLG00000015176	-	100	81.747	ENSPNAG00000009357	UPF2	100	81.513	Pygocentrus_nattereri
ENSHGLG00000015176	-	99	90.502	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSHGLG00000015176	-	99	96.139	ENSRBIG00000037780	UPF2	100	96.139	Rhinopithecus_bieti
ENSHGLG00000015176	-	100	97.091	ENSRROG00000043547	UPF2	100	97.091	Rhinopithecus_roxellana
ENSHGLG00000015176	-	100	97.246	ENSSBOG00000020012	UPF2	100	97.246	Saimiri_boliviensis_boliviensis
ENSHGLG00000015176	-	100	81.279	ENSSFOG00015023788	upf2	100	82.605	Scleropages_formosus
ENSHGLG00000015176	-	90	82.394	ENSSMAG00000007637	UPF2	100	78.915	Scophthalmus_maximus
ENSHGLG00000015176	-	100	81.655	ENSSDUG00000017244	UPF2	99	81.811	Seriola_dumerili
ENSHGLG00000015176	-	99	79.859	ENSSLDG00000016866	UPF2	82	82.776	Seriola_lalandi_dorsalis
ENSHGLG00000015176	-	100	93.863	ENSSARG00000008615	UPF2	100	95.358	Sorex_araneus
ENSHGLG00000015176	-	99	88.976	ENSSPUG00000014544	UPF2	99	89.370	Sphenodon_punctatus
ENSHGLG00000015176	-	68	98.619	ENSSSCG00000011117	-	100	98.619	Sus_scrofa
ENSHGLG00000015176	-	99	92.271	ENSTGUG00000002163	-	100	92.744	Taeniopygia_guttata
ENSHGLG00000015176	-	100	81.216	ENSTRUG00000007519	UPF2	99	81.187	Takifugu_rubripes
ENSHGLG00000015176	-	100	79.196	ENSTNIG00000004453	UPF2	100	79.345	Tetraodon_nigroviridis
ENSHGLG00000015176	-	93	89.500	ENSTBEG00000012679	UPF2	93	88.315	Tupaia_belangeri
ENSHGLG00000015176	-	100	97.402	ENSTTRG00000016388	UPF2	100	97.402	Tursiops_truncatus
ENSHGLG00000015176	-	95	100.000	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSHGLG00000015176	-	100	98.033	ENSUMAG00000012953	UPF2	95	98.033	Ursus_maritimus
ENSHGLG00000015176	-	85	96.774	ENSVPAG00000006763	UPF2	83	96.774	Vicugna_pacos
ENSHGLG00000015176	-	100	97.797	ENSVVUG00000006166	UPF2	100	97.797	Vulpes_vulpes
ENSHGLG00000015176	-	100	82.521	ENSXETG00000033103	UPF2	80	81.404	Xenopus_tropicalis
ENSHGLG00000015176	-	92	84.044	ENSXCOG00000011604	UPF2	100	80.766	Xiphophorus_couchianus
ENSHGLG00000015176	-	92	84.556	ENSXMAG00000017209	UPF2	100	80.718	Xiphophorus_maculatus