EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00000015718 (Gene tree)
Gene ID: -
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Plus strand
Length: 127401 bases
Position: chrJH602045.1:34904358-35031758
Accession: 101697023
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000022037	R3H	PF01424.22	3.2e-12	1	1
ENSHGLP00000022035	R3H	PF01424.22	7.1e-12	1	1
ENSHGLP00000022034	R3H	PF01424.22	8.2e-12	1	1
ENSHGLP00000022036	R3H	PF01424.22	2.1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000022248	R3HDM1-205	1149	-	ENSHGLP00000022038	383 (aa)	-	-
ENSHGLT00000022245	R3HDM1-202	1455	-	ENSHGLP00000022035	485 (aa)	-	-
ENSHGLT00000022244	R3HDM1-201	2086	-	ENSHGLP00000022034	548 (aa)	-	-
ENSHGLT00000022247	R3HDM1-204	858	-	ENSHGLP00000022037	286 (aa)	-	-
ENSHGLT00000022246	R3HDM1-203	3399	XM_013076909	ENSHGLP00000022036	1132 (aa)	XP_021092658	UPI000A3563E9

Gene Model

Click here to download ENSHGLG00000015718's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000015718's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00000015718	R3HDM1	80	69.231	ENSHGLG00000010434	-	95	59.024
ENSHGLG00000015718	R3HDM1	91	56.840	ENSHGLG00000001335	ARPP21	92	55.405
ENSHGLG00000015718	R3HDM1	72	67.143	ENSHGLG00000010421	-	94	61.709

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000015718	R3HDM1	99	94.346	ENSG00000048991	R3HDM1	99	94.346	Homo_sapiens
ENSHGLG00000015718	R3HDM1	100	63.880	ENSAPOG00000020850	r3hdm1	97	49.029	Acanthochromis_polyacanthus
ENSHGLG00000015718	R3HDM1	99	95.387	ENSAMEG00000014886	R3HDM1	100	90.053	Ailuropoda_melanoleuca
ENSHGLG00000015718	R3HDM1	90	56.250	ENSACIG00000018791	-	81	58.151	Amphilophus_citrinellus
ENSHGLG00000015718	R3HDM1	100	63.880	ENSAOCG00000005192	r3hdm1	99	48.566	Amphiprion_ocellaris
ENSHGLG00000015718	R3HDM1	100	59.386	ENSAPEG00000016108	r3hdm1	99	46.438	Amphiprion_percula
ENSHGLG00000015718	R3HDM1	100	60.274	ENSATEG00000000232	r3hdm1	99	46.549	Anabas_testudineus
ENSHGLG00000015718	R3HDM1	100	77.409	ENSAPLG00000015231	R3HDM1	100	75.264	Anas_platyrhynchos
ENSHGLG00000015718	R3HDM1	100	76.687	ENSACAG00000001676	R3HDM1	100	77.038	Anolis_carolinensis
ENSHGLG00000015718	R3HDM1	100	93.827	ENSANAG00000035334	R3HDM1	100	89.710	Aotus_nancymaae
ENSHGLG00000015718	R3HDM1	82	64.508	ENSACLG00000027282	r3hdm1	94	48.067	Astatotilapia_calliptera
ENSHGLG00000015718	R3HDM1	80	57.143	ENSAMXG00000020587	arpp21	84	58.704	Astyanax_mexicanus
ENSHGLG00000015718	R3HDM1	99	68.301	ENSAMXG00000012861	R3HDM1	100	71.394	Astyanax_mexicanus
ENSHGLG00000015718	R3HDM1	88	71.745	ENSAMXG00000003536	r3hdm1	91	73.156	Astyanax_mexicanus
ENSHGLG00000015718	R3HDM1	99	94.649	ENSBTAG00000013302	R3HDM1	100	92.247	Bos_taurus
ENSHGLG00000015718	R3HDM1	100	93.827	ENSCJAG00000011718	R3HDM1	100	89.163	Callithrix_jacchus
ENSHGLG00000015718	R3HDM1	99	95.203	ENSCAFG00000005075	R3HDM1	100	90.317	Canis_familiaris
ENSHGLG00000015718	R3HDM1	99	95.203	ENSCAFG00020016119	R3HDM1	100	93.140	Canis_lupus_dingo
ENSHGLG00000015718	R3HDM1	99	94.834	ENSCHIG00000020851	R3HDM1	100	92.159	Capra_hircus
ENSHGLG00000015718	R3HDM1	100	83.624	ENSCAPG00000013043	-	100	83.624	Cavia_aperea
ENSHGLG00000015718	R3HDM1	100	94.107	ENSCPOG00000012784	R3HDM1	100	94.515	Cavia_porcellus
ENSHGLG00000015718	R3HDM1	100	94.033	ENSCCAG00000027199	R3HDM1	100	89.437	Cebus_capucinus
ENSHGLG00000015718	R3HDM1	100	91.821	ENSCATG00000023642	R3HDM1	100	91.645	Cercocebus_atys
ENSHGLG00000015718	R3HDM1	100	95.473	ENSCLAG00000007962	R3HDM1	100	95.473	Chinchilla_lanigera
ENSHGLG00000015718	R3HDM1	100	91.733	ENSCSAG00000016356	R3HDM1	100	91.557	Chlorocebus_sabaeus
ENSHGLG00000015718	R3HDM1	88	78.449	ENSCHOG00000013638	R3HDM1	91	78.449	Choloepus_hoffmanni
ENSHGLG00000015718	R3HDM1	88	80.471	ENSCPBG00000009645	R3HDM1	100	90.406	Chrysemys_picta_bellii
ENSHGLG00000015718	R3HDM1	100	89.037	ENSCANG00000034748	R3HDM1	100	88.918	Colobus_angolensis_palliatus
ENSHGLG00000015718	R3HDM1	99	93.358	ENSCGRG00001012357	R3hdm1	97	90.388	Cricetulus_griseus_chok1gshd
ENSHGLG00000015718	R3HDM1	100	94.077	ENSCGRG00000012080	R3hdm1	100	94.077	Cricetulus_griseus_crigri
ENSHGLG00000015718	R3HDM1	99	51.159	ENSCSEG00000008944	r3hdm1	99	42.248	Cynoglossus_semilaevis
ENSHGLG00000015718	R3HDM1	100	63.545	ENSCVAG00000007582	r3hdm1	99	47.628	Cyprinodon_variegatus
ENSHGLG00000015718	R3HDM1	79	55.263	ENSDARG00000061081	arpp21	51	52.632	Danio_rerio
ENSHGLG00000015718	R3HDM1	99	88.160	ENSDNOG00000000771	R3HDM1	100	85.627	Dasypus_novemcinctus
ENSHGLG00000015718	R3HDM1	100	95.122	ENSDORG00000027689	-	100	95.122	Dipodomys_ordii
ENSHGLG00000015718	R3HDM1	100	86.047	ENSETEG00000013606	R3HDM1	100	78.238	Echinops_telfairi
ENSHGLG00000015718	R3HDM1	87	50.893	ENSEBUG00000014746	arpp21	97	42.730	Eptatretus_burgeri
ENSHGLG00000015718	R3HDM1	99	94.834	ENSEASG00005007392	R3HDM1	100	95.074	Equus_asinus_asinus
ENSHGLG00000015718	R3HDM1	100	94.774	ENSECAG00000019114	R3HDM1	100	95.074	Equus_caballus
ENSHGLG00000015718	R3HDM1	99	84.658	ENSEEUG00000012589	R3HDM1	86	84.375	Erinaceus_europaeus
ENSHGLG00000015718	R3HDM1	80	79.828	ENSELUG00000004909	R3HDM1	99	52.675	Esox_lucius
ENSHGLG00000015718	R3HDM1	77	69.196	ENSELUG00000014413	r3hdm1	100	50.874	Esox_lucius
ENSHGLG00000015718	R3HDM1	100	94.856	ENSFCAG00000027113	R3HDM1	100	95.567	Felis_catus
ENSHGLG00000015718	R3HDM1	99	79.228	ENSFALG00000013731	R3HDM1	93	67.896	Ficedula_albicollis
ENSHGLG00000015718	R3HDM1	100	96.701	ENSFDAG00000016478	R3HDM1	100	96.701	Fukomys_damarensis
ENSHGLG00000015718	R3HDM1	100	65.068	ENSFHEG00000018713	r3hdm1	100	47.321	Fundulus_heteroclitus
ENSHGLG00000015718	R3HDM1	78	71.883	ENSGMOG00000006042	-	74	68.182	Gadus_morhua
ENSHGLG00000015718	R3HDM1	100	73.077	ENSGALG00000012246	R3HDM1	99	84.918	Gallus_gallus
ENSHGLG00000015718	R3HDM1	100	59.932	ENSGAFG00000006203	r3hdm1	94	47.479	Gambusia_affinis
ENSHGLG00000015718	R3HDM1	80	72.458	ENSGACG00000014925	r3hdm1	99	49.191	Gasterosteus_aculeatus
ENSHGLG00000015718	R3HDM1	100	83.664	ENSGAGG00000007840	R3HDM1	96	82.206	Gopherus_agassizii
ENSHGLG00000015718	R3HDM1	100	94.077	ENSGGOG00000008156	R3HDM1	100	89.173	Gorilla_gorilla
ENSHGLG00000015718	R3HDM1	100	62.252	ENSHBUG00000015737	R3HDM1	90	58.700	Haplochromis_burtoni
ENSHGLG00000015718	R3HDM1	99	72.828	ENSHGLG00100015374	-	100	71.996	Heterocephalus_glaber_male
ENSHGLG00000015718	R3HDM1	100	100.000	ENSHGLG00100003184	-	100	100.000	Heterocephalus_glaber_male
ENSHGLG00000015718	R3HDM1	57	68.421	ENSHCOG00000005036	-	55	81.579	Hippocampus_comes
ENSHGLG00000015718	R3HDM1	82	60.244	ENSHCOG00000013366	r3hdm1	88	60.250	Hippocampus_comes
ENSHGLG00000015718	R3HDM1	91	62.084	ENSIPUG00000013629	r3hdm1	95	68.536	Ictalurus_punctatus
ENSHGLG00000015718	R3HDM1	99	68.814	ENSIPUG00000001676	R3HDM1	99	64.578	Ictalurus_punctatus
ENSHGLG00000015718	R3HDM1	100	95.264	ENSSTOG00000007572	R3HDM1	100	95.264	Ictidomys_tridecemlineatus
ENSHGLG00000015718	R3HDM1	100	93.380	ENSJJAG00000018208	-	100	93.380	Jaculus_jaculus
ENSHGLG00000015718	R3HDM1	59	75.652	ENSKMAG00000013373	-	89	75.652	Kryptolebias_marmoratus
ENSHGLG00000015718	R3HDM1	100	58.703	ENSLBEG00000027981	-	94	61.872	Labrus_bergylta
ENSHGLG00000015718	R3HDM1	100	73.377	ENSLACG00000005334	R3HDM1	100	72.843	Latimeria_chalumnae
ENSHGLG00000015718	R3HDM1	99	69.408	ENSLOCG00000001641	r3hdm1	100	65.112	Lepisosteus_oculatus
ENSHGLG00000015718	R3HDM1	99	94.649	ENSLAFG00000009065	R3HDM1	100	91.894	Loxodonta_africana
ENSHGLG00000015718	R3HDM1	100	89.701	ENSMFAG00000030331	R3HDM1	100	95.320	Macaca_fascicularis
ENSHGLG00000015718	R3HDM1	100	89.701	ENSMMUG00000009844	R3HDM1	100	88.996	Macaca_mulatta
ENSHGLG00000015718	R3HDM1	100	89.701	ENSMNEG00000027793	R3HDM1	100	95.320	Macaca_nemestrina
ENSHGLG00000015718	R3HDM1	100	89.701	ENSMLEG00000043189	R3HDM1	100	89.173	Mandrillus_leucophaeus
ENSHGLG00000015718	R3HDM1	100	64.846	ENSMAMG00000004532	r3hdm1	99	48.378	Mastacembelus_armatus
ENSHGLG00000015718	R3HDM1	100	62.081	ENSMZEG00005003157	r3hdm1	99	47.952	Maylandia_zebra
ENSHGLG00000015718	R3HDM1	100	76.744	ENSMGAG00000012461	R3HDM1	100	74.517	Meleagris_gallopavo
ENSHGLG00000015718	R3HDM1	100	94.425	ENSMAUG00000010315	R3hdm1	100	94.425	Mesocricetus_auratus
ENSHGLG00000015718	R3HDM1	100	83.624	ENSMICG00000042655	-	100	84.729	Microcebus_murinus
ENSHGLG00000015718	R3HDM1	100	95.062	ENSMICG00000005900	-	100	89.367	Microcebus_murinus
ENSHGLG00000015718	R3HDM1	100	94.077	ENSMOCG00000019833	-	100	94.077	Microtus_ochrogaster
ENSHGLG00000015718	R3HDM1	99	85.353	ENSMODG00000000923	R3HDM1	97	78.782	Monodelphis_domestica
ENSHGLG00000015718	R3HDM1	100	64.966	ENSMALG00000009000	r3hdm1	100	45.962	Monopterus_albus
ENSHGLG00000015718	R3HDM1	100	94.077	MGP_CAROLIEiJ_G0014543	R3hdm1	100	94.077	Mus_caroli
ENSHGLG00000015718	R3HDM1	100	94.077	ENSMUSG00000056211	R3hdm1	100	94.077	Mus_musculus
ENSHGLG00000015718	R3HDM1	100	93.728	MGP_PahariEiJ_G0027779	R3hdm1	100	93.728	Mus_pahari
ENSHGLG00000015718	R3HDM1	100	94.077	MGP_SPRETEiJ_G0015350	R3hdm1	100	94.077	Mus_spretus
ENSHGLG00000015718	R3HDM1	99	95.387	ENSMPUG00000002412	R3HDM1	100	90.300	Mustela_putorius_furo
ENSHGLG00000015718	R3HDM1	99	93.727	ENSMLUG00000013824	R3HDM1	100	88.499	Myotis_lucifugus
ENSHGLG00000015718	R3HDM1	100	93.728	ENSNGAG00000001313	-	100	93.728	Nannospalax_galili
ENSHGLG00000015718	R3HDM1	94	95.861	ENSNLEG00000008622	R3HDM1	100	89.437	Nomascus_leucogenys
ENSHGLG00000015718	R3HDM1	99	74.723	ENSMEUG00000011784	R3HDM1	100	68.442	Notamacropus_eugenii
ENSHGLG00000015718	R3HDM1	100	97.213	ENSODEG00000008607	R3HDM1	100	97.213	Octodon_degus
ENSHGLG00000015718	R3HDM1	81	71.429	ENSONIG00000012017	r3hdm1	98	46.953	Oreochromis_niloticus
ENSHGLG00000015718	R3HDM1	100	85.050	ENSOANG00000007987	R3HDM1	100	77.982	Ornithorhynchus_anatinus
ENSHGLG00000015718	R3HDM1	99	94.834	ENSOCUG00000017366	R3HDM1	98	88.791	Oryctolagus_cuniculus
ENSHGLG00000015718	R3HDM1	100	64.041	ENSORLG00000004297	r3hdm1	99	46.742	Oryzias_latipes
ENSHGLG00000015718	R3HDM1	100	64.726	ENSORLG00020019252	-	93	60.192	Oryzias_latipes_hni
ENSHGLG00000015718	R3HDM1	100	64.041	ENSORLG00015017355	r3hdm1	99	46.786	Oryzias_latipes_hsok
ENSHGLG00000015718	R3HDM1	100	64.333	ENSOMEG00000003882	-	94	58.429	Oryzias_melastigma
ENSHGLG00000015718	R3HDM1	99	94.834	ENSOGAG00000003136	R3HDM1	100	89.859	Otolemur_garnettii
ENSHGLG00000015718	R3HDM1	99	94.834	ENSOARG00000010788	R3HDM1	100	89.065	Ovis_aries
ENSHGLG00000015718	R3HDM1	95	95.887	ENSPPAG00000027858	R3HDM1	100	89.543	Pan_paniscus
ENSHGLG00000015718	R3HDM1	100	94.856	ENSPPRG00000002626	R3HDM1	100	89.418	Panthera_pardus
ENSHGLG00000015718	R3HDM1	100	95.062	ENSPTIG00000016581	R3HDM1	100	89.506	Panthera_tigris_altaica
ENSHGLG00000015718	R3HDM1	95	95.887	ENSPTRG00000012494	R3HDM1	100	89.543	Pan_troglodytes
ENSHGLG00000015718	R3HDM1	100	89.701	ENSPANG00000026448	R3HDM1	100	89.085	Papio_anubis
ENSHGLG00000015718	R3HDM1	97	66.549	ENSPKIG00000004328	r3hdm1	91	76.190	Paramormyrops_kingsleyae
ENSHGLG00000015718	R3HDM1	100	66.667	ENSPKIG00000011224	R3HDM1	90	63.747	Paramormyrops_kingsleyae
ENSHGLG00000015718	R3HDM1	100	79.070	ENSPSIG00000012915	R3HDM1	100	74.582	Pelodiscus_sinensis
ENSHGLG00000015718	R3HDM1	87	55.708	ENSPMGG00000011264	-	92	54.795	Periophthalmus_magnuspinnatus
ENSHGLG00000015718	R3HDM1	100	94.077	ENSPEMG00000015187	R3hdm1	100	94.077	Peromyscus_maniculatus_bairdii
ENSHGLG00000015718	R3HDM1	81	63.265	ENSPMAG00000003369	-	98	43.870	Petromyzon_marinus
ENSHGLG00000015718	R3HDM1	100	88.581	ENSPCIG00000002491	R3HDM1	100	88.480	Phascolarctos_cinereus
ENSHGLG00000015718	R3HDM1	100	63.545	ENSPFOG00000015036	r3hdm1	99	48.699	Poecilia_formosa
ENSHGLG00000015718	R3HDM1	89	61.693	ENSPLAG00000018042	r3hdm1	95	47.831	Poecilia_latipinna
ENSHGLG00000015718	R3HDM1	89	61.915	ENSPMEG00000023947	r3hdm1	95	48.045	Poecilia_mexicana
ENSHGLG00000015718	R3HDM1	100	64.846	ENSPREG00000007902	r3hdm1	94	60.699	Poecilia_reticulata
ENSHGLG00000015718	R3HDM1	100	87.863	ENSPPYG00000012815	R3HDM1	100	87.863	Pongo_abelii
ENSHGLG00000015718	R3HDM1	100	85.714	ENSPCAG00000006208	R3HDM1	100	76.808	Procavia_capensis
ENSHGLG00000015718	R3HDM1	100	89.095	ENSPCOG00000012698	R3HDM1	100	86.995	Propithecus_coquereli
ENSHGLG00000015718	R3HDM1	99	88.561	ENSPVAG00000006098	R3HDM1	100	81.371	Pteropus_vampyrus
ENSHGLG00000015718	R3HDM1	100	62.252	ENSPNYG00000008701	-	97	60.911	Pundamilia_nyererei
ENSHGLG00000015718	R3HDM1	89	71.351	ENSPNAG00000013952	r3hdm1	94	71.274	Pygocentrus_nattereri
ENSHGLG00000015718	R3HDM1	76	75.962	ENSPNAG00000005436	R3HDM1	99	75.884	Pygocentrus_nattereri
ENSHGLG00000015718	R3HDM1	80	55.459	ENSPNAG00000004162	arpp21	81	57.600	Pygocentrus_nattereri
ENSHGLG00000015718	R3HDM1	99	92.989	ENSRNOG00000004099	R3hdm1	100	89.613	Rattus_norvegicus
ENSHGLG00000015718	R3HDM1	94	92.816	ENSRBIG00000033317	R3HDM1	100	98.155	Rhinopithecus_bieti
ENSHGLG00000015718	R3HDM1	100	89.701	ENSRROG00000034534	R3HDM1	100	88.478	Rhinopithecus_roxellana
ENSHGLG00000015718	R3HDM1	94	96.078	ENSSBOG00000020389	R3HDM1	100	89.085	Saimiri_boliviensis_boliviensis
ENSHGLG00000015718	R3HDM1	99	88.029	ENSSHAG00000016999	R3HDM1	100	80.282	Sarcophilus_harrisii
ENSHGLG00000015718	R3HDM1	100	71.134	ENSSFOG00015014134	r3hdm1	100	70.803	Scleropages_formosus
ENSHGLG00000015718	R3HDM1	100	66.450	ENSSFOG00015019851	-	99	57.000	Scleropages_formosus
ENSHGLG00000015718	R3HDM1	100	62.069	ENSSMAG00000001669	r3hdm1	94	45.060	Scophthalmus_maximus
ENSHGLG00000015718	R3HDM1	100	64.626	ENSSDUG00000010749	r3hdm1	99	46.994	Seriola_dumerili
ENSHGLG00000015718	R3HDM1	100	63.333	ENSSLDG00000004499	r3hdm1	99	46.387	Seriola_lalandi_dorsalis
ENSHGLG00000015718	R3HDM1	100	77.076	ENSSARG00000000352	-	69	81.728	Sorex_araneus
ENSHGLG00000015718	R3HDM1	95	85.029	ENSSPUG00000004167	R3HDM1	100	76.450	Sphenodon_punctatus
ENSHGLG00000015718	R3HDM1	100	65.529	ENSSPAG00000004648	r3hdm1	99	47.863	Stegastes_partitus
ENSHGLG00000015718	R3HDM1	100	95.062	ENSSSCG00000015692	R3HDM1	100	92.687	Sus_scrofa
ENSHGLG00000015718	R3HDM1	99	78.676	ENSTGUG00000011750	R3HDM1	100	70.000	Taeniopygia_guttata
ENSHGLG00000015718	R3HDM1	89	60.222	ENSTRUG00000011654	r3hdm1	93	46.956	Takifugu_rubripes
ENSHGLG00000015718	R3HDM1	93	59.579	ENSTNIG00000010362	r3hdm1	95	45.445	Tetraodon_nigroviridis
ENSHGLG00000015718	R3HDM1	100	83.598	ENSTTRG00000003935	R3HDM1	100	83.422	Tursiops_truncatus
ENSHGLG00000015718	R3HDM1	99	95.387	ENSUAMG00000024806	R3HDM1	100	92.532	Ursus_americanus
ENSHGLG00000015718	R3HDM1	91	97.285	ENSUMAG00000005552	R3HDM1	100	85.979	Ursus_maritimus
ENSHGLG00000015718	R3HDM1	85	93.382	ENSVPAG00000007333	R3HDM1	93	85.000	Vicugna_pacos
ENSHGLG00000015718	R3HDM1	100	94.425	ENSVVUG00000006457	R3HDM1	100	92.863	Vulpes_vulpes
ENSHGLG00000015718	R3HDM1	86	82.423	ENSXETG00000019330	r3hdm1	100	64.460	Xenopus_tropicalis
ENSHGLG00000015718	R3HDM1	83	63.420	ENSXCOG00000017448	r3hdm1	94	48.780	Xiphophorus_couchianus
ENSHGLG00000015718	R3HDM1	100	64.765	ENSXMAG00000007885	r3hdm1	99	47.481	Xiphophorus_maculatus